Rorug06G0401600

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012294
Physical Location & Seq
Reverse (-)
54649788 .. 54651783
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0401600.1

Sequence Viewer

Length: 612 bp
ATGCAAGAGACAAAAGACGCGAGCAGCAAGCCCAAAAACCCTAAGAAGGCCAACCTCTCAGATCACAGTTCCATCAAGCACCTCCTCGACGAGTCCGTCTCCGAGATTGTTACGAGTCGGGGATATGTGGAGGATACCAAGTTAAGTAACTTGAAGTTGTTGATTGGAACCATTGTGATAACCATTGCTCTATTTGCTCAGTTCTACAAGAAGAAATTTCCTGAAAACCAGTACTTCCTGATTGGATGCATTTTCAAATTCCCTCAAATGTGTTTAATCTTTGACTCTGGCAAGTATATTGTCATCAATGGGGTGCTACATCTGATCTCCTACATGAAGGAGAAAAATGCAATATTGTTCACTCATCCTCCCGTGGGATCCTTTAGTACTGGGTTGGTGGTGTCTTCCAAATTACCAAGATTTTCTGACTTGTACACTCTTACAATAGCAAGTGCAGATCCAAAATCAATTTCTGCAAATAAACCTGTGGAATTCACAAAGAGTGTTACTAAGTGGTTTACCGAGGATGGAGTATTGGTGGAAGGCTTGCTGTGGAAGGAAGTAGATGGACTAATAAATGATTATGCAAGAGAACCAAAGAAGAGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

203

Amino Acids

22.79

Weight (kDa)

9.15

Isoelectric Point (pI)

26.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPC25 PF06703 25 - 193 2.5e-35 Microsomal signal peptidase 25 kDa subunit (SPC25)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AccII CGCG 1 cut(s) 20
AclWI GGATC 3 cut(s) 372, 385, 452
AcsI RAATTY 3 cut(s) 215, 257, 491
AfaI GTAC 3 cut(s) 233, 388, 434
AfiI CCNNNNNNNGG 2 cut(s) 46, 374
AgsI TTSAA 2 cut(s) 154, 256
AjuI GAANNNNNNNTTGG 2 cut(s) 454, 486
Alw26I GTCTC 2 cut(s) 2, 103
AlwI GGATC 3 cut(s) 372, 385, 452
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 3 cut(s) 215, 257, 491
BamHI GGATCC 1 cut(s) 377
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 36
BccI CCATC 3 cut(s) 80, 521, 560
BciVI GTATCC 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 2, 103
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmcAI AGTACT 2 cut(s) 233, 388
BmiI GGNNCC 2 cut(s) 169, 379
BmrI ACTGGG 1 cut(s) 399
BmsI GCATC 1 cut(s) 236
BmuI ACTGGG 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BsaJI CCNNGG 2 cut(s) 372, 522
BsaXI ACNNNNNCTCC 4 cut(s) 352, 382, 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 374
Bse1I ACTGG 2 cut(s) 229, 394
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 372, 522
BseGI GGATG 3 cut(s) 251, 364, 532
BseLI CCNNNNNNNGG 2 cut(s) 46, 374
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 2 cut(s) 72, 212
BseNI ACTGG 2 cut(s) 229, 394
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 474
Bsh1236I CGCG 1 cut(s) 20
BshFI GGCC 1 cut(s) 50
BslI CCNNNNNNNGG 2 cut(s) 46, 374
BsmAI GTCTC 2 cut(s) 2, 103
BsmBI CGTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 50
Bsp1407I TGTACA 1 cut(s) 432
Bsp143I GATC 4 cut(s) 61, 324, 377, 457
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 2 cut(s) 71, 211
BspFNI CGCG 1 cut(s) 20
BspLI GGNNCC 2 cut(s) 169, 379
BspPI GGATC 3 cut(s) 372, 385, 452
BspQI GCTCTTC 1 cut(s) 596
BsrDI GCAATG 1 cut(s) 183
BsrGI TGTACA 1 cut(s) 432
BsrI ACTGG 2 cut(s) 229, 394
BssECI CCNNGG 2 cut(s) 372, 522
BssMI GATC 4 cut(s) 61, 324, 377, 457
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 596
BstAUI TGTACA 1 cut(s) 432
BstC8I GCNNGC 3 cut(s) 22, 29, 548
BstDEI CTNAG 4 cut(s) 42, 58, 198, 510
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 3 cut(s) 251, 364, 532
BstFNI CGCG 1 cut(s) 20
BstKTI GATC 4 cut(s) 64, 327, 380, 460
BstMAI GTCTC 2 cut(s) 2, 103
BstMBI GATC 4 cut(s) 61, 324, 377, 457
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstUI CGCG 1 cut(s) 20
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 377, 457
BstYI RGATCY 2 cut(s) 377, 457
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 1 cut(s) 50
BtgI CCRYGG 1 cut(s) 372
BtsCI GGATG 3 cut(s) 251, 364, 532
Cac8I GCNNGC 3 cut(s) 22, 29, 548
CseI GACGC 1 cut(s) 26
Csp6I GTAC 3 cut(s) 232, 387, 433
CviAII CATG 1 cut(s) 334
CviJI RGCY 3 cut(s) 31, 50, 546
CviKI_1 RGCY 3 cut(s) 31, 50, 546
CviQI GTAC 3 cut(s) 232, 387, 433
DdeI CTNAG 4 cut(s) 42, 58, 198, 510
DpnI GATC 4 cut(s) 63, 326, 379, 459
DpnII GATC 4 cut(s) 61, 324, 377, 457
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
EcoRI GAATTC 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 251
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 1 cut(s) 337
FaiI YATR 4 cut(s) 126, 297, 335, 585
FatI CATG 1 cut(s) 333
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 3 cut(s) 258, 351, 539
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 50
HgaI GACGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 337
HinfI GANTC 3 cut(s) 92, 115, 284
Hpy166II GTNNAC 3 cut(s) 360, 435, 519
Hpy188I TCNGA 4 cut(s) 61, 103, 324, 427
Hpy188III TCNNGA 2 cut(s) 221, 238
Hpy8I GTNNAC 3 cut(s) 360, 435, 519
Hpy99I CGWCG 1 cut(s) 92
HpyAV CCTTC 4 cut(s) 40, 331, 536, 550
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 6 cut(s) 4, 249, 350, 455, 476, 587
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 4 cut(s) 42, 58, 198, 510
Hsp92II CATG 1 cut(s) 337
Kzo9I GATC 4 cut(s) 61, 324, 377, 457
LguI GCTCTTC 1 cut(s) 596
LpnPI CCDG 6 cut(s) 234, 242, 251, 273, 375, 498
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 236
MaeIII GTNAC 3 cut(s) 109, 146, 505
MalI GATC 4 cut(s) 63, 326, 379, 459
MboI GATC 4 cut(s) 61, 324, 377, 457
MboII GAAGA 2 cut(s) 223, 396
MflI RGATCY 2 cut(s) 377, 457
MluCI AATT 5 cut(s) 215, 257, 410, 468, 491
MlyI GAGTC 3 cut(s) 101, 124, 278
MnlI CCTC 7 cut(s) 65, 92, 95, 124, 273, 378, 517
Mph1103I ATGCAT 1 cut(s) 251
MseI TTAA 2 cut(s) 143, 275
MvnI CGCG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 194
NdeII GATC 4 cut(s) 61, 324, 377, 457
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 169, 379
NsiI ATGCAT 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 3 cut(s) 100, 123, 278
PpsI GAGTC 3 cut(s) 100, 123, 278
PspN4I GGNNCC 2 cut(s) 169, 379
PsuI RGATCY 2 cut(s) 377, 457
RsaI GTAC 3 cut(s) 233, 388, 434
RsaNI GTAC 3 cut(s) 232, 387, 433
SapI GCTCTTC 1 cut(s) 596
SaqAI TTAA 2 cut(s) 143, 275
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 4 cut(s) 61, 324, 377, 457
ScaI AGTACT 2 cut(s) 233, 388
SchI GAGTC 3 cut(s) 101, 124, 278
SetI ASST 3 cut(s) 57, 84, 487
SfaNI GCATC 1 cut(s) 236
Sse9I AATT 5 cut(s) 215, 257, 410, 468, 491
SspI AATATT 1 cut(s) 354
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 1 cut(s) 87
TasI AATT 5 cut(s) 215, 257, 410, 468, 491
TatI WGTACW 3 cut(s) 231, 386, 432
Tru1I TTAA 2 cut(s) 143, 275
Tru9I TTAA 2 cut(s) 143, 275
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 350
TspGWI ACGGA 1 cut(s) 85
XapI RAATTY 3 cut(s) 215, 257, 491
ZrmI AGTACT 2 cut(s) 233, 388
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.