Rorug06G0401500

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012294
Physical Location & Seq
Reverse (-)
54645842 .. 54648766
2925 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0401500.1

Sequence Viewer

Length: 762 bp
ATGGCTGCTAGCAAACCAGCATTTTTCACGGTCCTCATTGGTGATTTCTGCCGACAACTGAAAATGCCAACTGCGTTTGTGGACAAGTTAAGGGGAACACCACCTTGCCAATGTGTTCTTAGAGGTCCCAATGGACAAAGTTGGAATGTGACACTGGAAGAGAGAGAAAGTGGTTTGTTCTTCCGTAAGGGTTGGCGGAAATTTGTGAAGTATCATTGTTTGGAAGAAGGGGACTTTTTGGTCTTCCATTATACTGGCAAACTTAAGTTTGATGTCACAATTTATGATGAAAGTGCCTGTGAAATGGATTTAGAAGTATCCAAGAGGAGAAGTCTCGCTGATGGTAGTAGCGATCAAGTAATGTCTGGGAAGGCTGTAATTGAAGAAACACCAACTGGATTGACGGTGTTCCAGTCAAGGAATTCATGTTTTATGAAAACTTTGGAGACATTTAGACGTTATGATCTGACGATTCCGCAGAAAATAGTGAAAGCTGAGGGTCTTAAGGGACACATGTCTCTAACGCTTCGAGATCCAAAACAGAGATCACGGATTGTTGAGACTGATGTCACCTTAGATAAACGTTTGAAGCTGACAAAAGGTTGGTCCCAAAGTTGCCGGGAGTTCAAGATCTCAATTGGGGACAAGGTTGTTTTCGAGTTTGTCAAGCCAAATGTGATTCAACTTCATATCTTCAGAGGCAAAGATGTGCTACTTTCAGGTCCTAAAGTTGTGGACTCTAGCAACTATAGGCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

253

Amino Acids

28.94

Weight (kDa)

9.35

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 18 - 95 1.3e-16 B3 DNA binding domain
B3 PF02362 145 - 233 4.7e-09 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AciI CCGC 2 cut(s) 196, 476
AclI AACGTT 1 cut(s) 583
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 2 cut(s) 200, 421
AcuI CTGAAG 1 cut(s) 679
AflII CTTAAG 2 cut(s) 263, 503
AflIII ACRYGT 1 cut(s) 513
AgsI TTSAA 4 cut(s) 383, 589, 628, 683
AluBI AGCT 2 cut(s) 494, 592
AluI AGCT 2 cut(s) 494, 592
Alw26I GTCTC 4 cut(s) 338, 440, 522, 554
AlwI GGATC 1 cut(s) 527
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 200, 421
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspS9I GGNCC 4 cut(s) 31, 125, 606, 722
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 2 cut(s) 53, 562
AsuNHI GCTAGC 1 cut(s) 8
AvaII GGWCC 4 cut(s) 31, 125, 606, 722
BbsI GAAGAC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 495
BccI CCATC 1 cut(s) 335
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 4 cut(s) 338, 440, 522, 554
BfaI CTAG 3 cut(s) 9, 741, 760
BfmI CTRYAG 1 cut(s) 748
BfrI CTTAAG 2 cut(s) 263, 503
BfuI GTATCC 1 cut(s) 328
BglII AGATCT 1 cut(s) 630
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 620
Bme18I GGWCC 4 cut(s) 31, 125, 606, 722
BmgT120I GGNCC 4 cut(s) 31, 125, 606, 722
BmiI GGNNCC 2 cut(s) 127, 608
BmrFI CCNGG 1 cut(s) 620
BmtI GCTAGC 1 cut(s) 12
BoxI GACNNNNGTC 2 cut(s) 514, 566
BpiI GAAGAC 1 cut(s) 235
Bpu10I CCTNAGC 1 cut(s) 495
BpuMI CCSGG 1 cut(s) 620
Bse1I ACTGG 4 cut(s) 159, 259, 400, 412
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 4 cut(s) 159, 259, 400, 412
BseRI GAGGAG 1 cut(s) 340
BsiSI CCGG 1 cut(s) 619
BslFI GGGAC 5 cut(s) 111, 245, 522, 592, 656
BsmAI GTCTC 4 cut(s) 338, 440, 522, 554
BsmFI GGGAC 5 cut(s) 111, 245, 522, 592, 656
Bsp143I GATC 5 cut(s) 352, 463, 532, 545, 630
BspACI CCGC 2 cut(s) 196, 476
BspCNI CTCAG 1 cut(s) 487
BspLI GGNNCC 2 cut(s) 127, 608
BspOI GCTAGC 1 cut(s) 12
BspPI GGATC 1 cut(s) 527
BspTI CTTAAG 2 cut(s) 263, 503
BsrI ACTGG 4 cut(s) 159, 259, 400, 412
BssMI GATC 5 cut(s) 352, 463, 532, 545, 630
Bst4CI ACNGT 2 cut(s) 31, 406
Bst6I CTCTTC 1 cut(s) 153
BstAFI CTTAAG 2 cut(s) 263, 503
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 3 cut(s) 119, 495, 574
BstKTI GATC 5 cut(s) 355, 466, 535, 548, 633
BstMAI GTCTC 4 cut(s) 338, 440, 522, 554
BstMBI GATC 5 cut(s) 352, 463, 532, 545, 630
BstNSI RCATGY 1 cut(s) 517
BstPAI GACNNNNGTC 2 cut(s) 514, 566
BstSCI CCNGG 1 cut(s) 618
BstSFI CTRYAG 1 cut(s) 748
BstV2I GAAGAC 1 cut(s) 235
BstX2I RGATCY 2 cut(s) 532, 630
BstXI CCANNNNNNTGG 1 cut(s) 254
BstYI RGATCY 2 cut(s) 532, 630
BsuI GTATCC 1 cut(s) 328
BtsIMutI CAGTG 1 cut(s) 152
Cac8I GCNNGC 1 cut(s) 10
Cfr13I GGNCC 4 cut(s) 31, 125, 606, 722
CviAII CATG 2 cut(s) 426, 514
CviJI RGCY 5 cut(s) 5, 374, 494, 592, 670
CviKI_1 RGCY 5 cut(s) 5, 374, 494, 592, 670
DdeI CTNAG 3 cut(s) 119, 495, 574
DpnI GATC 5 cut(s) 354, 465, 534, 547, 632
DpnII GATC 5 cut(s) 352, 463, 532, 545, 630
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 211
Eco47I GGWCC 4 cut(s) 31, 125, 606, 722
Eco57I CTGAAG 1 cut(s) 679
EcoO109I RGGNCCY 2 cut(s) 125, 722
EcoRI GAATTC 1 cut(s) 421
FaeI CATG 2 cut(s) 429, 517
FaiI YATR 8 cut(s) 252, 285, 427, 434, 462, 515, 690, 750
FaqI GGGAC 5 cut(s) 111, 245, 522, 592, 656
FatI CATG 2 cut(s) 425, 513
Fnu4HI GCNGC 1 cut(s) 6
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 3 cut(s) 9, 741, 760
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 619
Hin1II CATG 2 cut(s) 429, 517
HinfI GANTC 3 cut(s) 472, 679, 737
HpaII CCGG 1 cut(s) 619
HphI GGTGA 2 cut(s) 53, 562
Hpy166II GTNNAC 2 cut(s) 82, 736
Hpy188I TCNGA 2 cut(s) 468, 698
Hpy188III TCNNGA 2 cut(s) 530, 628
Hpy8I GTNNAC 2 cut(s) 82, 736
HpyAV CCTTC 2 cut(s) 221, 364
HpyCH4III ACNGT 2 cut(s) 31, 406
HpyCH4IV ACGT 2 cut(s) 457, 583
HpyF3I CTNAG 3 cut(s) 119, 495, 574
HpySE526I ACGT 2 cut(s) 457, 583
Hsp92II CATG 2 cut(s) 429, 517
Kzo9I GATC 5 cut(s) 352, 463, 532, 545, 630
LpnPI CCDG 9 cut(s) 30, 140, 240, 310, 351, 381, 425, 632, 705
MaeI CTAG 3 cut(s) 9, 741, 760
MaeII ACGT 2 cut(s) 457, 583
MaeIII GTNAC 3 cut(s) 148, 274, 568
MalI GATC 5 cut(s) 354, 465, 534, 547, 632
MboI GATC 5 cut(s) 352, 463, 532, 545, 630
MboII GAAGA 6 cut(s) 170, 172, 235, 236, 395, 685
MfeI CAATTG 1 cut(s) 636
MflI RGATCY 2 cut(s) 532, 630
MluCI AATT 5 cut(s) 200, 279, 378, 421, 636
MlyI GAGTC 1 cut(s) 731
MmeI TCCRAC 1 cut(s) 122
MnlI CCTC 5 cut(s) 44, 116, 318, 490, 692
MseI TTAA 3 cut(s) 89, 264, 504
MspCI CTTAAG 2 cut(s) 263, 503
MspI CCGG 1 cut(s) 619
MspR9I CCNGG 1 cut(s) 620
MunI CAATTG 1 cut(s) 636
NciI CCSGG 1 cut(s) 620
NdeII GATC 5 cut(s) 352, 463, 532, 545, 630
NheI GCTAGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 429, 517
NlaIV GGNNCC 2 cut(s) 127, 608
NmuCI GTSAC 3 cut(s) 148, 274, 568
NspI RCATGY 1 cut(s) 517
PciI ACATGT 1 cut(s) 513
PfeI GAWTC 2 cut(s) 472, 679
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 731
PpsI GAGTC 1 cut(s) 731
PpuMI RGGWCCY 2 cut(s) 125, 722
PscI ACATGT 1 cut(s) 513
PshAI GACNNNNGTC 2 cut(s) 514, 566
Psp1406I AACGTT 1 cut(s) 583
Psp5II RGGWCCY 2 cut(s) 125, 722
PspN4I GGNNCC 2 cut(s) 127, 608
PspPI GGNCC 4 cut(s) 31, 125, 606, 722
PspPPI RGGWCCY 2 cut(s) 125, 722
PsuI RGATCY 2 cut(s) 532, 630
SaqAI TTAA 3 cut(s) 89, 264, 504
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 352, 463, 532, 545, 630
Sau96I GGNCC 4 cut(s) 31, 125, 606, 722
SchI GAGTC 1 cut(s) 731
ScrFI CCNGG 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 748
SinI GGWCC 4 cut(s) 31, 125, 606, 722
SmlI CTYRAG 2 cut(s) 263, 503
SmoI CTYRAG 2 cut(s) 263, 503
Sse9I AATT 5 cut(s) 200, 279, 378, 421, 636
SsiI CCGC 2 cut(s) 196, 476
SspMI CTAG 3 cut(s) 9, 741, 760
StyD4I CCNGG 1 cut(s) 618
TaaI ACNGT 2 cut(s) 31, 406
TaiI ACGT 2 cut(s) 460, 586
TaqI TCGA 2 cut(s) 529, 657
TasI AATT 5 cut(s) 200, 279, 378, 421, 636
TfiI GAWTC 2 cut(s) 472, 679
Tru1I TTAA 3 cut(s) 89, 264, 504
Tru9I TTAA 3 cut(s) 89, 264, 504
TscAI CASTG 1 cut(s) 159
TseFI GTSAC 3 cut(s) 148, 274, 568
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 3 cut(s) 148, 274, 568
TspDTI ATGAA 4 cut(s) 303, 414, 449, 677
TspGWI ACGGA 2 cut(s) 173, 565
TspRI CASTG 1 cut(s) 159
Vha464I CTTAAG 2 cut(s) 263, 503
VpaK11BI GGWCC 4 cut(s) 31, 125, 606, 722
XapI RAATTY 2 cut(s) 200, 421
XceI RCATGY 1 cut(s) 517
XspI CTAG 3 cut(s) 9, 741, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.