Rroxscaffold_3G00276310

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012294
Physical Location & Seq
Forward (+)
67576385 .. 67580792
4408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00276310.1

Sequence Viewer

Length: 1278 bp
ATGCTGTTGCAAGTTCTCATCCCCCGCAGTTTGTTGAACAACAGATCAAAAGGTTTGGGAAGATATTCTCCTGCAGTTTATTTGGAAAACGGTGTGTGGTATCAGCAGACCCGCTTTAACCGGTTTGTAATGCAAAATGAAGGTAAATTGTTTCAGTCCAGCTATCCAAAATCTTTCAAAGACTTGGTAGGGAAAAATGGTGTGATCACGGTGCATGGTGAGCAACAGAGGAAACTCCATAGCATCGCTTCCAATATGATGCGTCTTGATAAGCTACTTAAAATTAATTTATTGGATGATATTCAAATGGTTATCGCTCAAGCTTTGAGCAATTACCCAACCAATCAGCCATTACTTCTTCAGGATCTTTGTAGAAAGTTGGCTATACATCTTATGGTTAATCAACTATTGGGAATTTCGAGTGAGATAGAGATTAATGAGATGACTCAGTGTTTCTCCGATTTCGTTGATGGTTGTCTCTCCGTTCCAATCAACTTGCCCGGCTGTGCTTATCACACTGCCATGAAGGCAAGGGAGAAAATCATAACCAAGATAAAAAGGATAATCAAAGAACAGAGAGAAGGTGCAACGGAAATAGGTAATGGCGTGCTTGGAAGAATACTGGAGGAAGAAAGCTTAGCTGATGAGTCTGTAGCAGACTTCATTATCAATCTTCTCTTTGCTGGCAACGAAACGACTGCTAAAACAATGCTATTTGCAGTCTATTTCCTTACCCAGTGTCCCACAGCAATGCAACAATTACTGGATGAACAAGACAGTCTCAGAAGAAGCAAATCTGTTGGAGAAGAAATGCTTACATGGCACGATTATAAAGCAATGCCTTTTACTCAGTGTGTCATTGATGAAACACTTCGACTTGGAGGAATTGCAATTTGGTTACTAAGGGAGGCAAAAGAAGACGTTGAGTACCAAGACTATGTTATTCCCAAAGGATGCTTTGTCGTTCCATTCCTCTCAGCAGTTCATTTGGATGAAAATGTGTATAGTGAAGCCCTCGCCTTCAGTCCTTGGAGATGGATGGACAGTGAAAATCAGGAGAAAAGAAATTGGAGAAGTAGCCTATACTTTGCACCCTTTGGAGGAGGACCTAGATTTTGTCCAGGAGCTGAGTTGGCTCGCCTTCAAATTGCCCTTTTCCTCCATTACTTTGTCACAACATATCGGTGGACCCAACTTAAAGACGATCGTATGTCCTTCTTTCCCTCGGCTCGTTTAGTGAATGGCTTCCAAATCGACATAACTAGACGACATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

425

Amino Acids

48.78

Weight (kDa)

6.73

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 40 - 405 2.1e-52 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73340
fragaria_vesca FvH4_5g18610
malus_domestica MD14G1247400.v1.1
prunus_persica Prupe.5G245500_v2.0.a1
pyrus_communis pycom2874g00050
rosa_chinensis RchiOBHm_Chr7g0176891
rosa_laevigata RLG00000005575
rosa_multiflora Rmu_sc0005310.1_g000048
rosa_roxburghii Rroxscaffold_3G00276310
rosa_rugosa Rorug06G0401400 Rorug06G0401500 Rorug06G0401500 Rorug06G0401500 Rorug06G0401600
rosa_samantha Rh7AG001100 Rh7BG001500 Rh7CG000900 Rh7DG001200
rosa_wichuraiana Rw7G000080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
AciI CCGC 2 cut(s) 25, 112
AclWI GGATC 1 cut(s) 372
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 2 cut(s) 344, 1006
AfaI GTAC 1 cut(s) 929
AfiI CCNNNNNNNGG 1 cut(s) 1100
AgeI ACCGGT 1 cut(s) 120
AgsI TTSAA 4 cut(s) 37, 178, 305, 1145
AjnI CCWGG 1 cut(s) 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 877, 909
AluBI AGCT 6 cut(s) 162, 274, 323, 636, 641, 1127
AluI AGCT 6 cut(s) 162, 274, 323, 636, 641, 1127
Alw26I GTCTC 2 cut(s) 482, 785
AlwI GGATC 1 cut(s) 372
AlwNI CAGNNNCTG 1 cut(s) 1127
ApoI RAATTY 1 cut(s) 414
ArsI GACNNNNNNTTYG 2 cut(s) 1098, 1130
AseI ATTAAT 2 cut(s) 285, 435
AsiGI ACCGGT 1 cut(s) 120
Asp700I GAANNNNTTC 3 cut(s) 64, 870, 1244
AspS9I GGNCC 2 cut(s) 1106, 1188
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 1106, 1188
BbsI GAAGAC 1 cut(s) 924
BccI CCATC 3 cut(s) 464, 1029, 1033
BcgI CGANNNNNNTGC 2 cut(s) 680, 714
BciT130I CCWGG 1 cut(s) 1122
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 482, 785
BfaI CTAG 2 cut(s) 1110, 1263
BfmI CTRYAG 2 cut(s) 72, 651
BglI GCCNNNNNGGC 1 cut(s) 527
BlpI GCTNAGC 1 cut(s) 637
Bme1390I CCNGG 2 cut(s) 501, 1122
Bme18I GGWCC 2 cut(s) 1106, 1188
BmgT120I GGNCC 2 cut(s) 1106, 1188
BmiI GGNNCC 1 cut(s) 1190
BmrFI CCNGG 2 cut(s) 501, 1122
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 3 cut(s) 249, 252, 944
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 924
BpmI CTGGAG 1 cut(s) 644
Bpu1102I GCTNAGC 1 cut(s) 637
BpuEI CTTGAG 1 cut(s) 303
BpuMI CCSGG 1 cut(s) 501
BsaJI CCNNGG 2 cut(s) 1028, 1224
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 1 cut(s) 1100
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 3 cut(s) 627, 736, 768
Bse3DI GCAATG 2 cut(s) 756, 843
BseBI CCWGG 1 cut(s) 1122
BseDI CCNNGG 2 cut(s) 1028, 1224
BseGI GGATG 6 cut(s) 18, 301, 772, 959, 997, 1044
BseLI CCNNNNNNNGG 1 cut(s) 1100
BseMI GCAATG 2 cut(s) 756, 843
BseMII CTCAG 5 cut(s) 461, 796, 863, 990, 1119
BseNI ACTGG 3 cut(s) 627, 736, 768
BseRI GAGGAG 1 cut(s) 1116
Bsh1285I CGRYCG 1 cut(s) 1207
BshTI ACCGGT 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 1207
BsiSI CCGG 2 cut(s) 121, 501
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 1 cut(s) 1100
BsmAI GTCTC 2 cut(s) 482, 785
BsmFI GGGAC 1 cut(s) 726
Bsp143I GATC 4 cut(s) 44, 204, 364, 1204
Bsp1720I GCTNAGC 1 cut(s) 637
BspACI CCGC 2 cut(s) 25, 112
BspCNI CTCAG 5 cut(s) 460, 795, 862, 989, 1120
BspLI GGNNCC 1 cut(s) 1190
BspMAI CTGCAG 1 cut(s) 76
BspPI GGATC 1 cut(s) 372
BsrDI GCAATG 2 cut(s) 756, 843
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 3 cut(s) 627, 736, 768
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 1028, 1224
BssMI GATC 4 cut(s) 44, 204, 364, 1204
BssT1I CCWWGG 1 cut(s) 1028
Bst2UI CCWGG 1 cut(s) 1122
Bst4CI ACNGT 4 cut(s) 92, 211, 779, 1046
BstC8I GCNNGC 3 cut(s) 608, 685, 1138
BstDEI CTNAG 7 cut(s) 447, 637, 782, 849, 902, 976, 1128
BstF5I GGATG 6 cut(s) 18, 301, 772, 959, 997, 1044
BstKTI GATC 4 cut(s) 47, 207, 367, 1207
BstMAI GTCTC 2 cut(s) 482, 785
BstMBI GATC 4 cut(s) 44, 204, 364, 1204
BstMCI CGRYCG 1 cut(s) 1207
BstMWI GCNNNNNNNGC 4 cut(s) 220, 527, 820, 1133
BstNI CCWGG 1 cut(s) 1122
BstSCI CCNGG 2 cut(s) 499, 1120
BstSFI CTRYAG 2 cut(s) 72, 651
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
BtgZI GCGATG 1 cut(s) 229
BtsCI GGATG 6 cut(s) 18, 301, 772, 959, 997, 1044
BtsI GCAGTG 1 cut(s) 516
BtsIMutI CAGTG 5 cut(s) 455, 516, 743, 857, 1051
Cac8I GCNNGC 3 cut(s) 608, 685, 1138
CaiI CAGNNNCTG 1 cut(s) 1127
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 2 cut(s) 1106, 1188
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 928
CspAI ACCGGT 1 cut(s) 120
CviAII CATG 4 cut(s) 215, 523, 819, 1271
CviQI GTAC 1 cut(s) 928
DdeI CTNAG 7 cut(s) 447, 637, 782, 849, 902, 976, 1128
DpnI GATC 4 cut(s) 46, 206, 366, 1206
DpnII GATC 4 cut(s) 44, 204, 364, 1204
Eco130I CCWWGG 1 cut(s) 1028
Eco47I GGWCC 2 cut(s) 1106, 1188
Eco57I CTGAAG 2 cut(s) 344, 1006
EcoO109I RGGNCCY 1 cut(s) 1106
EcoRII CCWGG 1 cut(s) 1120
EcoT14I CCWWGG 1 cut(s) 1028
ErhI CCWWGG 1 cut(s) 1028
FaeI CATG 4 cut(s) 218, 526, 822, 1274
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 726
FatI CATG 4 cut(s) 214, 522, 818, 1270
FauI CCCGC 2 cut(s) 32, 119
FbaI TGATCA 1 cut(s) 204
FokI GGATG 6 cut(s) 5, 308, 779, 966, 1004, 1051
FspBI CTAG 2 cut(s) 1110, 1263
GsuI CTGGAG 1 cut(s) 644
HapII CCGG 2 cut(s) 121, 501
HgaI GACGC 1 cut(s) 251
Hin1II CATG 4 cut(s) 218, 526, 822, 1274
HindIII AAGCTT 2 cut(s) 321, 634
HinfI GANTC 2 cut(s) 445, 647
HpaII CCGG 2 cut(s) 121, 501
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 1188
Hpy188I TCNGA 2 cut(s) 460, 785
Hpy188III TCNNGA 3 cut(s) 266, 362, 1055
Hpy8I GTNNAC 1 cut(s) 1188
HpyAV CCTTC 6 cut(s) 134, 520, 575, 1030, 1151, 1225
HpyCH4III ACNGT 4 cut(s) 92, 211, 779, 1046
HpyCH4IV ACGT 1 cut(s) 921
HpyCH4V TGCA 9 cut(s) 10, 74, 133, 214, 587, 719, 754, 890, 1091
HpyF10VI GCNNNNNNNGC 4 cut(s) 220, 527, 820, 1133
HpyF3I CTNAG 7 cut(s) 447, 637, 782, 849, 902, 976, 1128
HpySE526I ACGT 1 cut(s) 921
Hsp92II CATG 4 cut(s) 218, 526, 822, 1274
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 4 cut(s) 44, 204, 364, 1204
LmnI GCTCC 1 cut(s) 1124
LweI GCATC 3 cut(s) 249, 252, 944
MaeI CTAG 2 cut(s) 1110, 1263
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 2 cut(s) 897, 1171
MalI GATC 4 cut(s) 46, 206, 366, 1206
MboI GATC 4 cut(s) 44, 204, 364, 1204
MboII GAAGA 8 cut(s) 72, 350, 627, 641, 665, 798, 818, 929
MflI RGATCY 1 cut(s) 364
MlyI GAGTC 2 cut(s) 439, 656
MmeI TCCRAC 1 cut(s) 781
MroXI GAANNNNTTC 3 cut(s) 64, 870, 1244
MseI TTAA 6 cut(s) 117, 279, 285, 399, 435, 1197
MslI CAYNNNNRTG 4 cut(s) 521, 749, 990, 1183
MspI CCGG 2 cut(s) 121, 501
MspR9I CCNGG 2 cut(s) 501, 1122
MvaI CCWGG 1 cut(s) 1122
MwoI GCNNNNNNNGC 4 cut(s) 220, 527, 820, 1133
NciI CCSGG 1 cut(s) 501
NdeII GATC 4 cut(s) 44, 204, 364, 1204
NlaIII CATG 4 cut(s) 218, 526, 822, 1274
NlaIV GGNNCC 1 cut(s) 1190
NmeAIII GCCGAG 1 cut(s) 1205
NmuCI GTSAC 1 cut(s) 1171
PdmI GAANNNNTTC 3 cut(s) 64, 870, 1244
PfoI TCCNGGA 1 cut(s) 1120
PinAI ACCGGT 1 cut(s) 120
Ple19I CGATCG 1 cut(s) 1207
PleI GAGTC 2 cut(s) 439, 655
PpsI GAGTC 2 cut(s) 439, 655
PpuMI RGGWCCY 1 cut(s) 1106
PshBI ATTAAT 2 cut(s) 285, 435
PsiI TTATAA 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 1106
Psp6I CCWGG 1 cut(s) 1120
PspGI CCWGG 1 cut(s) 1120
PspN4I GGNNCC 1 cut(s) 1190
PspPI GGNCC 2 cut(s) 1106, 1188
PspPPI RGGWCCY 1 cut(s) 1106
PstI CTGCAG 1 cut(s) 76
PstNI CAGNNNCTG 1 cut(s) 1127
PsuI RGATCY 1 cut(s) 364
PvuI CGATCG 1 cut(s) 1207
RsaI GTAC 1 cut(s) 929
RsaNI GTAC 1 cut(s) 928
RseI CAYNNNNRTG 4 cut(s) 521, 749, 990, 1183
SaqAI TTAA 6 cut(s) 117, 279, 285, 399, 435, 1197
Sau3AI GATC 4 cut(s) 44, 204, 364, 1204
Sau96I GGNCC 2 cut(s) 1106, 1188
SchI GAGTC 2 cut(s) 439, 656
ScrFI CCNGG 2 cut(s) 501, 1122
SfaNI GCATC 3 cut(s) 249, 252, 944
SfcI CTRYAG 2 cut(s) 72, 651
SinI GGWCC 2 cut(s) 1106, 1188
SmiMI CAYNNNNRTG 4 cut(s) 521, 749, 990, 1183
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
SsiI CCGC 2 cut(s) 25, 112
SspMI CTAG 2 cut(s) 1110, 1263
StyD4I CCNGG 2 cut(s) 499, 1120
StyI CCWWGG 1 cut(s) 1028
TaaI ACNGT 4 cut(s) 92, 211, 779, 1046
TaiI ACGT 1 cut(s) 924
TaqI TCGA 3 cut(s) 419, 874, 1254
Tru1I TTAA 6 cut(s) 117, 279, 285, 399, 435, 1197
Tru9I TTAA 6 cut(s) 117, 279, 285, 399, 435, 1197
TscAI CASTG 5 cut(s) 455, 523, 743, 857, 1051
TseFI GTSAC 1 cut(s) 1171
Tsp45I GTSAC 1 cut(s) 1171
TspDTI ATGAA 7 cut(s) 153, 539, 652, 783, 879, 974, 1008
TspGWI ACGGA 2 cut(s) 472, 605
TspRI CASTG 5 cut(s) 455, 523, 743, 857, 1051
VpaK11BI GGWCC 2 cut(s) 1106, 1188
VspI ATTAAT 2 cut(s) 285, 435
XapI RAATTY 1 cut(s) 414
XmnI GAANNNNTTC 3 cut(s) 64, 870, 1244
XspI CTAG 2 cut(s) 1110, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.