Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013681

Physical Location & Seq

Genomic Coordinates Forward (+)

12018510 .. 12020240

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCCAATCAAAAGGGTACCTTGCTGGAAAGACAAGCCAGTATTGCTATCGGTTTATGTGGAGAGGCCGAAGAGAAGACCAGCTTCGTTAACTCATCGCCACCACCACCACCACCACCACCACCACCATCATTATGTTCATCACACCATCAAGCGAGAGGCTATTTCTCATAGGGATGGTGCTGCTGGCAAAGGCTATACTACTAGTAGGAGAGCTGAGCTCCTTCAGTACTCTCAACGCCTTCGCCAATCTGCTAGAAGAGCTCCAGAATCATCATCACCTTCCACACCCTATGTTCCAAATCCAAACCACACCAGCAATCCACAACCTCAGGCTGAGATTGTCACTGTCCCAAAAAAGCCAAAGAATTCAAAAGCTCCAACCTGCTTTGGCAACTGCAAAGTACCAACCATATTTGGACCTCTTCTTACAAGTTTCCAAGCTAAGCAAGAGAGGAAGACAAGAAAGAAACGTGGCGGTAATTCCAGCAATAAAATAAAAGCTGCTATCAAAACCTTGAAGGTGCAAAAGCAACATCTTGTTCTCATCATCAGCAAGGCGAAAGAGAAACTAACAACTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

22.15

Weight (kDa)

10.9

Isoelectric Point (pI)

55.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20360
prunus_persica	Prupe.5G055600_v2.0.a1
pyrus_communis	pycom06g03980
rosa_chinensis	RchiOBHm_Chr7g0205621
rosa_laevigata	RLG00000003370 RLG00000003371
rosa_multiflora	Rmu_ssc0000482.1_g000024
rosa_roxburghii	Rroxscaffold_3G00252140 Rroxscaffold_3G00252150
rosa_rugosa	Rorug07G0092100 Rorug07G0092200
rosa_samantha	Rh7AG223000 Rh7BG218000 Rh7CG235000 Rh7CG235900 Rh7CG236200 Rh7DG229900
rosa_wichuraiana	Rw7G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	392
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	477
AcsI	RAATTY	1 cut(s)	367
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	18, 230, 405
AgsI	TTSAA	2 cut(s)	372, 520
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	7 cut(s)	83, 215, 220, 263, 377, 443, 503
AluI	AGCT	7 cut(s)	83, 215, 220, 263, 377, 443, 503
Alw21I	GWGCWC	2 cut(s)	222, 265
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	182, 503
ApoI	RAATTY	1 cut(s)	367
Asp718I	GGTACC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	2 cut(s)	222, 265
BbsI	GAAGAC	2 cut(s)	82, 464
Bbv12I	GWGCWC	2 cut(s)	222, 265
BbvI	GCAGC	2 cut(s)	169, 490
BccI	CCATC	3 cut(s)	135, 155, 170
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	2 cut(s)	204, 255
BfuAI	ACCTGC	1 cut(s)	392
BisI	GCNGC	2 cut(s)	183, 504
BlpI	GCTNAGC	2 cut(s)	216, 444
BlsI	GCNGC	2 cut(s)	184, 505
BmcAI	AGTACT	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	18
BpiI	GAAGAC	2 cut(s)	82, 464
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	2 cut(s)	216, 444
Bse1I	ACTGG	1 cut(s)	38
Bse21I	CCTNAGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	3 cut(s)	207, 327, 344
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	169, 490
BshFI	GGCC	1 cut(s)	67
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	2 cut(s)	222, 265
BslFI	GGGAC	1 cut(s)	335
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	222, 265
Bsp1720I	GCTNAGC	2 cut(s)	216, 444
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	67
BspCNI	CTCAG	3 cut(s)	208, 328, 343
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	392
BspQI	GCTCTTC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	38
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	3 cut(s)	65, 253, 429
BstC8I	GCNNGC	1 cut(s)	187
BstDEI	CTNAG	4 cut(s)	216, 330, 336, 444
BstF5I	GGATG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 260
BstV1I	GCAGC	2 cut(s)	169, 490
BstV2I	GAAGAC	2 cut(s)	82, 464
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	1 cut(s)	67
BtgZI	GCGATG	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	345
BveI	ACCTGC	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	17, 229, 404
CviQI	GTAC	3 cut(s)	17, 229, 404
DdeI	CTNAG	4 cut(s)	216, 330, 336, 444
Eam1104I	CTCTTC	3 cut(s)	65, 253, 429
EarI	CTCTTC	3 cut(s)	65, 253, 429
Ecl136II	GAGCTC	2 cut(s)	220, 263
Eco24I	GRGCYC	2 cut(s)	222, 265
Eco47I	GGWCC	1 cut(s)	419
Eco53kI	GAGCTC	2 cut(s)	220, 263
Eco57I	CTGAAG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	330
EcoICRI	GAGCTC	2 cut(s)	220, 263
EcoRI	GAATTC	1 cut(s)	367
EcoT38I	GRGCYC	2 cut(s)	222, 265
FaiI	YATR	7 cut(s)	57, 135, 171, 198, 294, 413, 581
FalI	AAGNNNNNCTT	3 cut(s)	36, 67, 99
FaqI	GGGAC	1 cut(s)	335
Fnu4HI	GCNGC	2 cut(s)	183, 504
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	2 cut(s)	222, 265
Fsp4HI	GCNGC	2 cut(s)	183, 504
FspBI	CTAG	2 cut(s)	204, 255
GluI	GCNGC	2 cut(s)	183, 504
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	67
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	1 cut(s)	269
HpaI	GTTAAC	1 cut(s)	90
HphI	GGTGA	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	233, 251, 291, 514
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	2 cut(s)	399, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 260
HpyF3I	CTNAG	4 cut(s)	216, 330, 336, 444
HpySE526I	ACGT	1 cut(s)	472
KpnI	GGTACC	1 cut(s)	20
KspAI	GTTAAC	1 cut(s)	90
LguI	GCTCTTC	1 cut(s)	253
LmnI	GCTCC	3 cut(s)	225, 268, 382
LpnPI	CCDG	9 cut(s)	10, 51, 93, 171, 279, 317, 328, 397, 499
Lsp1109I	GCAGC	2 cut(s)	169, 490
MaeI	CTAG	2 cut(s)	204, 255
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	343
MboII	GAAGA	5 cut(s)	82, 87, 270, 416, 469
MhlI	GDGCHC	2 cut(s)	222, 265
MluCI	AATT	2 cut(s)	367, 481
MmeI	TCCRAC	1 cut(s)	404
MnlI	CCTC	5 cut(s)	57, 151, 339, 432, 447
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	2 cut(s)	132, 174
MwoI	GCNNNNNNNGC	2 cut(s)	43, 260
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	343
PciSI	GCTCTTC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	184, 505
Psp124BI	GAGCTC	2 cut(s)	222, 265
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	419
RsaI	GTAC	3 cut(s)	18, 230, 405
RsaNI	GTAC	3 cut(s)	17, 229, 404
RseI	CAYNNNNRTG	2 cut(s)	132, 174
SacI	GAGCTC	2 cut(s)	222, 265
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	183, 504
Sau96I	GGNCC	1 cut(s)	419
ScaI	AGTACT	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	222, 265
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	2 cut(s)	132, 174
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	2 cut(s)	367, 481
SsiI	CCGC	1 cut(s)	477
SspMI	CTAG	2 cut(s)	204, 255
SstI	GAGCTC	2 cut(s)	222, 265
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	1 cut(s)	475
TasI	AATT	2 cut(s)	367, 481
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	2 cut(s)	182, 503
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	352
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	367
XspI	CTAG	2 cut(s)	204, 255
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.