Rh7AG223000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0013681
Physical Location & Seq
Forward (+)
20863961 .. 20896210
32250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG223000.1

Sequence Viewer

Length: 435 bp
ATGCATATAGAATTCCGTTCTGTCATATTTTCCAGGCATGCCAACCAAAAGGGTAATAATATTGAGGGAAAGAATCCCGTGGATGGTGCTGGTGGCAAAGGCTATACTACTAGTAGGAGAGCTGCGCTCCTTCAGTACTCTCAACGCCTTCGCCAATTTGCTAGAACAGCTCTAGCATCACCATCACCATCACCATCTATACCCTCTGTTCCAAATCCAAGCCACACCAGCAATCCTCAACCTCAGGCTGAGGTTGTCACTGTCCCAACAAAGCCAAAGAAAGCAAAAGCCCCAACCTGCTTTGGCAACTGCGAAGTACCAACCATATTTGGGCCTCTTACAAGTTTCCACGCTAAGAAAGCGAGGAATACAAGAAAGAAACGTGGCGGTAATGCCAGCAATAAAATAAAAGCTGCTATCAAAACCTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.54

Weight (kDa)

11.13

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 305
AciI CCGC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 11
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 2 cut(s) 137, 318
AfiI CCNNNNNNNGG 2 cut(s) 83, 330
AgsI TTSAA 1 cut(s) 430
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 122, 170, 413
AluI AGCT 3 cut(s) 122, 170, 413
AoxI GGCC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 122, 413
ApoI RAATTY 1 cut(s) 11
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 171, 177, 183
AxyI CCTNAGG 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 109, 400
BccI CCATC 4 cut(s) 77, 190, 196, 202
BciT130I CCWGG 1 cut(s) 34
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 3 cut(s) 111, 162, 173
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 2 cut(s) 123, 414
BlsI GCNGC 2 cut(s) 124, 415
BmcAI AGTACT 1 cut(s) 137
Bme1390I CCNGG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 185
BplI GAGNNNNNCTC 2 cut(s) 111, 143
Bpu10I CCTNAGC 1 cut(s) 249
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 83, 330
Bse21I CCTNAGG 1 cut(s) 243
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 2 cut(s) 83, 330
BseMII CTCAG 2 cut(s) 240, 257
BseXI GCAGC 2 cut(s) 109, 400
BshFI GGCC 1 cut(s) 334
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 83, 330
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 1 cut(s) 334
BspACI CCGC 1 cut(s) 387
BspANI GGCC 1 cut(s) 334
BspCNI CTCAG 2 cut(s) 241, 256
BspMI ACCTGC 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 39, 397
BstDEI CTNAG 3 cut(s) 243, 249, 354
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 88
BstHHI GCGC 1 cut(s) 127
BstMWI GCNNNNNNNGC 3 cut(s) 167, 228, 359
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 109, 400
Bsu36I CCTNAGG 1 cut(s) 243
BsuRI GGCC 1 cut(s) 334
BtgI CCRYGG 1 cut(s) 78
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 258
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 2 cut(s) 39, 397
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 136, 317
CviAII CATG 1 cut(s) 38
CviJI RGCY 9 cut(s) 102, 122, 170, 222, 248, 274, 290, 334, 413
CviKI_1 RGCY 9 cut(s) 102, 122, 170, 222, 248, 274, 290, 334, 413
CviQI GTAC 2 cut(s) 136, 317
DdeI CTNAG 3 cut(s) 243, 249, 354
Eco57I CTGAAG 1 cut(s) 116
Eco81I CCTNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 11
EcoRII CCWGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 41
FaiI YATR 7 cut(s) 6, 8, 26, 39, 105, 200, 326
FaqI GGGAC 1 cut(s) 248
FatI CATG 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 123, 414
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 123, 414
FspBI CTAG 3 cut(s) 111, 162, 173
GlaI GCGC 1 cut(s) 126
GluI GCNGC 2 cut(s) 123, 414
HaeIII GGCC 1 cut(s) 334
HhaI GCGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 41
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 1 cut(s) 73
HphI GGTGA 3 cut(s) 171, 177, 183
HpyAV CCTTC 2 cut(s) 140, 158
HpyCH4III ACNGT 1 cut(s) 262
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 167, 228, 359
HpyF3I CTNAG 3 cut(s) 243, 249, 354
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 1 cut(s) 41
HspAI GCGC 1 cut(s) 125
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 7 cut(s) 19, 46, 75, 230, 241, 310, 409
Lsp1109I GCAGC 2 cut(s) 109, 400
LweI GCATC 1 cut(s) 185
MaeI CTAG 3 cut(s) 111, 162, 173
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 256
MluCI AATT 2 cut(s) 11, 155
MnlI CCTC 7 cut(s) 58, 214, 244, 246, 252, 345, 357
Mph1103I ATGCAT 1 cut(s) 6
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 167, 228, 359
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 41
PaeI GCATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 73
PkrI GCNGC 2 cut(s) 124, 415
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspPI GGNCC 1 cut(s) 332
RsaI GTAC 2 cut(s) 137, 318
RsaNI GTAC 2 cut(s) 136, 317
SatI GCNGC 2 cut(s) 123, 414
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 34
SetI ASST 8 cut(s) 124, 172, 244, 255, 299, 385, 415, 428
SfaNI GCATC 1 cut(s) 185
SpeI ACTAGT 1 cut(s) 110
SphI GCATGC 1 cut(s) 41
Sse9I AATT 2 cut(s) 11, 155
SsiI CCGC 1 cut(s) 387
SspI AATATT 1 cut(s) 61
SspMI CTAG 3 cut(s) 111, 162, 173
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 262
TaiI ACGT 1 cut(s) 385
TasI AATT 2 cut(s) 11, 155
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 73
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 2 cut(s) 122, 413
Tsp45I GTSAC 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 5
TspRI CASTG 1 cut(s) 265
XapI RAATTY 1 cut(s) 11
XceI RCATGY 1 cut(s) 41
XspI CTAG 3 cut(s) 111, 162, 173
ZrmI AGTACT 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.