RLG00000003371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013681
Physical Location & Seq
Reverse (-)
47724354 .. 47724848
495 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003371

Sequence Viewer

Length: 342 bp
ATGCCAACCAAAACGGTTACCTGCCTCAAAAGTAAACCAGTGTTGCTGACCGTGTACGTGGAGAGACCGAATAGAAGACCATCTTCATCAACTCACCCTCACCAGCACCATCCTTATATTCAACACACCATCAAGCGGGAGGTTATTCATTACAGGCATGGTGCCGGTGGCCAAGGCTATATTAGTCGGGGAGCGGAGCTGCTTCAGTTCTCTCAACGCCTTCGTCTATCTGCTAGATCAGCAGCACCAGCATCCAAACCCTATTACCAAAACCAAAACCATACCAAGAGTCCAGCTGCCAAGGTACCATATCCCTACCTTTGTGTTACAATTGCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.79

Weight (kDa)

10.29

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 29
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 161, 304
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 2 cut(s) 136, 194
AcoI YGGCCR 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 188
AfaI GTAC 2 cut(s) 56, 306
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 1 cut(s) 122
AluBI AGCT 2 cut(s) 199, 296
AluI AGCT 2 cut(s) 199, 296
Alw26I GTCTC 1 cut(s) 58
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 3 cut(s) 199, 242, 296
Asp718I GGTACC 1 cut(s) 304
AsuHPI GGTGA 2 cut(s) 86, 92
BalI TGGCCA 1 cut(s) 171
BanI GGYRCC 2 cut(s) 161, 304
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 186, 254, 283
BccI CCATC 3 cut(s) 88, 117, 137
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 29
BisI GCNGC 3 cut(s) 200, 243, 297
BlsI GCNGC 3 cut(s) 201, 244, 298
BmiI GGNNCC 2 cut(s) 163, 306
BmsI GCATC 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 82
BsaAI YACGTR 1 cut(s) 58
BsaI GGTCTC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 172, 300
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 172, 300
BseGI GGATG 2 cut(s) 109, 251
BseLI CCNNNNNNNGG 1 cut(s) 135
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 186, 254, 283
BshFI GGCC 1 cut(s) 171
BshNI GGYRCC 2 cut(s) 161, 304
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 58
BsnI GGCC 1 cut(s) 171
Bso31I GGTCTC 1 cut(s) 58
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 2 cut(s) 136, 194
BspANI GGCC 1 cut(s) 171
BspLI GGNNCC 2 cut(s) 163, 306
BspMI ACCTGC 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 161, 304
BspTNI GGTCTC 1 cut(s) 58
BsrBI CCGCTC 1 cut(s) 194
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 38
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 2 cut(s) 172, 300
BssMI GATC 1 cut(s) 236
BssT1I CCWWGG 2 cut(s) 172, 300
Bst4CI ACNGT 2 cut(s) 16, 52
BstBAI YACGTR 1 cut(s) 58
BstEII GGTNACC 1 cut(s) 16
BstF5I GGATG 2 cut(s) 109, 251
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 1 cut(s) 236
BstMWI GCNNNNNNNGC 2 cut(s) 239, 248
BstPI GGTNACC 1 cut(s) 16
BstV1I GCAGC 3 cut(s) 186, 254, 283
BstV2I GAAGAC 1 cut(s) 82
BsuRI GGCC 1 cut(s) 171
BtsCI GGATG 2 cut(s) 109, 251
BtsIMutI CAGTG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 164
Csp6I GTAC 2 cut(s) 55, 305
CviAII CATG 1 cut(s) 158
CviJI RGCY 4 cut(s) 171, 177, 199, 296
CviKI_1 RGCY 4 cut(s) 171, 177, 199, 296
CviQI GTAC 2 cut(s) 55, 305
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 172, 300
Eco31I GGTCTC 1 cut(s) 58
Eco57I CTGAAG 1 cut(s) 188
Eco91I GGTNACC 1 cut(s) 16
EcoO65I GGTNACC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 172, 300
ErhI CCWWGG 2 cut(s) 172, 300
FaeI CATG 1 cut(s) 161
FaiI YATR 5 cut(s) 117, 159, 180, 282, 310
FalI AAGNNNNNCTT 2 cut(s) 67, 99
FatI CATG 1 cut(s) 157
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 200, 243, 297
FokI GGATG 2 cut(s) 96, 238
Fsp4HI GCNGC 3 cut(s) 200, 243, 297
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 200, 243, 297
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 165
Hin1II CATG 1 cut(s) 161
HinfI GANTC 1 cut(s) 289
HpaII CCGG 1 cut(s) 165
HphI GGTGA 2 cut(s) 86, 92
Hpy166II GTNNAC 2 cut(s) 35, 55
Hpy8I GTNNAC 2 cut(s) 35, 55
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 16, 52
HpyCH4IV ACGT 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 2 cut(s) 239, 248
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 161
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 191, 196
LpnPI CCDG 7 cut(s) 34, 51, 116, 139, 178, 261, 306
Lsp1109I GCAGC 3 cut(s) 186, 254, 283
LweI GCATC 1 cut(s) 260
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 16, 325
MalI GATC 1 cut(s) 238
MbiI CCGCTC 1 cut(s) 194
MboI GATC 1 cut(s) 236
MboII GAAGA 2 cut(s) 75, 87
MfeI CAATTG 1 cut(s) 330
MlsI TGGCCA 1 cut(s) 171
MluCI AATT 1 cut(s) 330
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 3 cut(s) 35, 108, 133
Mox20I TGGCCA 1 cut(s) 171
MscI TGGCCA 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 1 cut(s) 165
MunI CAATTG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 239, 248
NdeII GATC 1 cut(s) 236
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 2 cut(s) 163, 306
PkrI GCNGC 3 cut(s) 201, 244, 298
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
Ppu21I YACGTR 1 cut(s) 58
PspEI GGTNACC 1 cut(s) 16
PspN4I GGNNCC 2 cut(s) 163, 306
PvuII CAGCTG 1 cut(s) 296
RsaI GTAC 2 cut(s) 56, 306
RsaNI GTAC 2 cut(s) 55, 305
SatI GCNGC 3 cut(s) 200, 243, 297
Sau3AI GATC 1 cut(s) 236
SchI GAGTC 1 cut(s) 298
SetI ASST 7 cut(s) 23, 60, 144, 201, 298, 306, 321
SfaNI GCATC 1 cut(s) 260
Sse9I AATT 1 cut(s) 330
SsiI CCGC 2 cut(s) 136, 194
SspMI CTAG 1 cut(s) 234
StyI CCWWGG 2 cut(s) 172, 300
TaaI ACNGT 2 cut(s) 16, 52
TaiI ACGT 1 cut(s) 60
TaqII GACCGA 1 cut(s) 82
TasI AATT 1 cut(s) 330
TscAI CASTG 1 cut(s) 45
TseI GCWGC 3 cut(s) 199, 242, 296
TspDTI ATGAA 2 cut(s) 75, 137
TspRI CASTG 1 cut(s) 45
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.