Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013681

Physical Location & Seq

Genomic Coordinates Forward (+)

22096839 .. 22097990

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG236200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCCAACCCAAAGGGTACCTTGCTGGAAAGATAAGCCGGTATTGGTATCGGTTTATGTGGAGAGACCGAAGAAAAAGCCAGCTTCGTCAACTCATCATCATCATCACCACCACCACCACCACCACCATCATGTTCATCACACCATCAAGCGAGAGGTTATTTCTCATAGGGATGGTTCTAGTGGCAAAGGCTATACTACTAGTAGGAGAGCCGAGCTCCTTCAGTACTCTCAACGCCTTCGCCAATCTGCTAGAACAGCTCTAGCATCACCATTACCATCCATACCCTCTGTTCCAAATCCAAGCCACACCAGCAATCCTCAACCTCAGGCTGAGGTTGTCACTGTCCCAACAAAGCCAAAGAAAGCAAAAGCCCCAACCTGCTTTGGCAACTGCGAAGTACCAACCATATTTGGGCCTCTTACAAGTTTCCACGCTAAGAAAGCGAGGAATACAAGAAAGAAACGTGGCGGTAATGCCAGCAATAAAATAAAAGCTGCCATCAAAACCTTGAAGGTGCAAAAGCAACAGGCCTTCTTCTGCAAGTTGTTCTCATCATCAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.17

Weight (kDa)

10.65

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20360
prunus_persica	Prupe.5G055600_v2.0.a1
pyrus_communis	pycom06g03980
rosa_chinensis	RchiOBHm_Chr7g0205621
rosa_laevigata	RLG00000003370 RLG00000003371
rosa_multiflora	Rmu_ssc0000482.1_g000024
rosa_roxburghii	Rroxscaffold_3G00252140 Rroxscaffold_3G00252150
rosa_rugosa	Rorug07G0092100 Rorug07G0092200
rosa_samantha	Rh7AG223000 Rh7BG218000 Rh7CG235000 Rh7CG235900 Rh7CG236200 Rh7DG229900
rosa_wichuraiana	Rw7G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AciI	CCGC	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	18, 227, 402
AfiI	CCNNNNNNNGG	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	514
AhlI	ACTAGT	1 cut(s)	200
AluBI	AGCT	4 cut(s)	83, 217, 260, 497
AluI	AGCT	4 cut(s)	83, 217, 260, 497
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	58
AoxI	GGCC	2 cut(s)	416, 531
ApeKI	GCWGC	1 cut(s)	497
Asp718I	GGTACC	1 cut(s)	16
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	2 cut(s)	98, 261
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	1 cut(s)	484
BccI	CCATC	5 cut(s)	135, 152, 167, 286, 509
BcoDI	GTCTC	1 cut(s)	58
BcuI	ACTAGT	1 cut(s)	200
BfaI	CTAG	4 cut(s)	180, 201, 252, 263
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
BmcAI	AGTACT	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	1 cut(s)	18
BmsI	GCATC	1 cut(s)	275
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu10I	CCTNAGC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	1 cut(s)	414
Bse118I	RCCGGY	1 cut(s)	37
Bse21I	CCTNAGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	178, 278
BseLI	CCNNNNNNNGG	1 cut(s)	414
BseMII	CTCAG	2 cut(s)	324, 341
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	2 cut(s)	418, 533
BshNI	GGYRCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	414
BsmAI	GTCTC	1 cut(s)	58
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	418, 533
Bso31I	GGTCTC	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	471
BspANI	GGCC	2 cut(s)	418, 533
BspCNI	CTCAG	2 cut(s)	325, 340
BspLI	GGNNCC	1 cut(s)	18
BspMI	ACCTGC	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	58
BsrFI	RCCGGY	1 cut(s)	37
BssAI	RCCGGY	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	346
BstC8I	GCNNGC	2 cut(s)	81, 481
BstDEI	CTNAG	3 cut(s)	327, 333, 438
BstF5I	GGATG	2 cut(s)	178, 278
BstMAI	GTCTC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 312, 443
BstV1I	GCAGC	1 cut(s)	484
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	418, 533
BtsCI	GGATG	2 cut(s)	178, 278
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	81, 481
Cfr10I	RCCGGY	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	3 cut(s)	17, 226, 401
CviAII	CATG	1 cut(s)	131
CviQI	GTAC	3 cut(s)	17, 226, 401
DdeI	CTNAG	3 cut(s)	327, 333, 438
Ecl136II	GAGCTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	533
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	58
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	206
Eco81I	CCTNAGG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	134
FaiI	YATR	6 cut(s)	57, 132, 168, 195, 284, 410
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	2 cut(s)	185, 265
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	4 cut(s)	180, 201, 252, 263
GluI	GCNGC	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	418, 533
HapII	CCGG	1 cut(s)	38
Hin1II	CATG	1 cut(s)	134
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	2 cut(s)	98, 261
Hpy166II	GTNNAC	1 cut(s)	90
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	4 cut(s)	230, 248, 508, 544
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	2 cut(s)	520, 543
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 312, 443
HpyF3I	CTNAG	3 cut(s)	327, 333, 438
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	1 cut(s)	134
KpnI	GGTACC	1 cut(s)	20
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	10, 51, 93, 314, 325, 394, 493, 515
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	4 cut(s)	180, 201, 252, 263
MaeII	ACGT	1 cut(s)	466
MaeIII	GTNAC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	82, 529
MhlI	GDGCHC	1 cut(s)	219
MnlI	CCTC	7 cut(s)	148, 298, 328, 330, 336, 429, 441
MslI	CAYNNNNRTG	2 cut(s)	129, 171
MspI	CCGG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	257, 312, 443
NlaIII	CATG	1 cut(s)	134
NlaIV	GGNNCC	1 cut(s)	18
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	499
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	416
RsaI	GTAC	3 cut(s)	18, 227, 402
RsaNI	GTAC	3 cut(s)	17, 226, 401
RseI	CAYNNNNRTG	2 cut(s)	129, 171
SacI	GAGCTC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	416
ScaI	AGTACT	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	129, 171
SpeI	ACTAGT	1 cut(s)	200
SseBI	AGGCCT	1 cut(s)	533
SsiI	CCGC	1 cut(s)	471
SspMI	CTAG	4 cut(s)	180, 201, 252, 263
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	533
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	1 cut(s)	469
TaqII	GACCGA	1 cut(s)	82
TatI	WGTACW	1 cut(s)	225
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	1 cut(s)	340
TspDTI	ATGAA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	349
XspI	CTAG	4 cut(s)	180, 201, 252, 263
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.