Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0013681

Physical Location & Seq

Genomic Coordinates Reverse (-)

5962503 .. 5964505

Gene Structure 2003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCCGACCAAAATGGGAACATGCTGCAAGGAGAAAGGGGTGTTGGTGAGCGTGTACGTGGAGAAACCGAAGAGGAGGACGTTCTCAAATCACCGTCACCATCACCATCACCACCATCACAATAACCATCATCATATTCATCACACCATCAAGAGAGAGGTTGTTCATTACAGGCGTGGTGCTGATGGAAGAGGGTACATTAGTAGGAGAGCTGAGCTCCTTCAGTACTCTCAACACCTTCGGCAATCTGCTAGATCAGCACCAGCTGCTTCCACAGCCTTAAATCCAAGGCCTAACCATACCAATAGTCAACAATCTCATGCCCAGATTGTTGCTGTCCGAAGAAAGCCAAATAAGATTTCGAAAGCACCAATCTGCTTTGGCAACTGGAAAATCCCGGGCATGTTTGGATTTTTTACAAGTTCACAAGCTAAGAAAGACAGGAAGACAAGAACAAAGCGTACTGGCTCTACCACCAGCAACAAAATAAAAGCTGTTATAAAAAGCTTGAAGGTGCAAAAGCAACGGGGAGTCTTTTCCAAGATGTTCTCATCTACAAAGCGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.77

Weight (kDa)

11.62

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20360
prunus_persica	Prupe.5G055600_v2.0.a1
pyrus_communis	pycom06g03980
rosa_chinensis	RchiOBHm_Chr7g0205621
rosa_laevigata	RLG00000003370 RLG00000003371
rosa_multiflora	Rmu_ssc0000482.1_g000024
rosa_roxburghii	Rroxscaffold_3G00252140 Rroxscaffold_3G00252150
rosa_rugosa	Rorug07G0092100 Rorug07G0092200
rosa_samantha	Rh7AG223000 Rh7BG218000 Rh7CG235000 Rh7CG235900 Rh7CG236200 Rh7DG229900
rosa_wichuraiana	Rw7G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	500
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	56, 197, 227, 463
AgsI	TTSAA	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 343, 375
AluBI	AGCT	6 cut(s)	212, 217, 266, 431, 494, 507
AluI	AGCT	6 cut(s)	212, 217, 266, 431, 494, 507
Alw21I	GWGCWC	1 cut(s)	219
Ama87I	CYCGRG	1 cut(s)	397
AoxI	GGCC	1 cut(s)	290
ApeKI	GCWGC	2 cut(s)	24, 266
AsuC2I	CCSGG	2 cut(s)	398, 399
AsuHPI	GGTGA	5 cut(s)	58, 83, 89, 95, 101
AsuII	TTCGAA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	397
BaeI	ACNNNNGTAYC	2 cut(s)	187, 220
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	452
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	11, 253
BccI	CCATC	6 cut(s)	108, 114, 123, 135, 155, 179
BcnI	CCSGG	2 cut(s)	398, 399
BfaI	CTAG	1 cut(s)	252
BisI	GCNGC	2 cut(s)	25, 267
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	2 cut(s)	26, 268
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	398, 399
BmeT110I	CYCGRG	1 cut(s)	397
BmrFI	CCNGG	2 cut(s)	398, 399
BpiI	GAAGAC	1 cut(s)	452
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
Bpu1102I	GCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	362
BpuMI	CCSGG	2 cut(s)	398, 399
BsaAI	YACGTR	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	287, 397
Bse1I	ACTGG	2 cut(s)	392, 469
BseDI	CCNNGG	2 cut(s)	287, 397
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	2 cut(s)	392, 469
BseRI	GAGGAG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	11, 253
BshFI	GGCC	1 cut(s)	292
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	397
BsiSI	CCGG	1 cut(s)	398
BsnI	GGCC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	397
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	1 cut(s)	254
Bsp1720I	GCTNAGC	1 cut(s)	213
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	362
BsrI	ACTGG	2 cut(s)	392, 469
BssECI	CCNNGG	2 cut(s)	287, 397
BssMI	GATC	1 cut(s)	254
BssT1I	CCWWGG	1 cut(s)	287
Bst4CI	ACNGT	1 cut(s)	95
Bst6I	CTCTTC	2 cut(s)	65, 184
BstAPI	GCANNNNNTGC	1 cut(s)	266
BstBAI	YACGTR	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	362
BstDEI	CTNAG	2 cut(s)	213, 432
BstKTI	GATC	1 cut(s)	257
BstMBI	GATC	1 cut(s)	254
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
BstNSI	RCATGY	2 cut(s)	24, 406
BstSCI	CCNGG	2 cut(s)	396, 397
BstV1I	GCAGC	2 cut(s)	11, 253
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	292
Cfr9I	CCCGGG	1 cut(s)	397
Csp6I	GTAC	4 cut(s)	55, 196, 226, 462
CviAII	CATG	3 cut(s)	21, 320, 403
CviQI	GTAC	4 cut(s)	55, 196, 226, 462
DdeI	CTNAG	2 cut(s)	213, 432
DpnI	GATC	1 cut(s)	256
DpnII	GATC	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	65, 184
EarI	CTCTTC	2 cut(s)	65, 184
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	287
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	206
Eco88I	CYCGRG	1 cut(s)	397
EcoICRI	GAGCTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	287
EcoT38I	GRGCYC	1 cut(s)	219
ErhI	CCWWGG	1 cut(s)	287
FaeI	CATG	3 cut(s)	24, 323, 406
FaiI	YATR	6 cut(s)	22, 135, 300, 321, 404, 500
FatI	CATG	3 cut(s)	20, 319, 402
Fnu4HI	GCNGC	2 cut(s)	25, 267
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	25, 267
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	2 cut(s)	25, 267
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	1 cut(s)	398
Hin1II	CATG	3 cut(s)	24, 323, 406
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	505
HinfI	GANTC	1 cut(s)	531
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	5 cut(s)	58, 83, 89, 95, 101
Hpy166II	GTNNAC	3 cut(s)	55, 311, 425
Hpy188I	TCNGA	1 cut(s)	341
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	3 cut(s)	55, 311, 425
HpyAV	CCTTC	3 cut(s)	230, 248, 505
HpyCH4III	ACNGT	1 cut(s)	95
HpyCH4IV	ACGT	2 cut(s)	57, 80
HpyCH4V	TGCA	2 cut(s)	27, 517
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
HpyF3I	CTNAG	2 cut(s)	213, 432
HpySE526I	ACGT	2 cut(s)	57, 80
Hsp92II	CATG	3 cut(s)	24, 323, 406
Kzo9I	GATC	1 cut(s)	254
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	8 cut(s)	157, 276, 338, 373, 411, 427, 450, 490
Lsp1109I	GCAGC	2 cut(s)	11, 253
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	2 cut(s)	57, 80
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	1 cut(s)	256
MboI	GATC	1 cut(s)	254
MboII	GAAGA	4 cut(s)	82, 201, 354, 457
MhlI	GDGCHC	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	540
MnlI	CCTC	4 cut(s)	66, 69, 151, 185
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	266
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	2 cut(s)	398, 399
MwoI	GCNNNNNNNGC	3 cut(s)	257, 266, 275
NciI	CCSGG	2 cut(s)	398, 399
NdeII	GATC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	24, 323, 406
NmuCI	GTSAC	1 cut(s)	95
NspI	RCATGY	2 cut(s)	24, 406
NspV	TTCGAA	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	292
PkrI	GCNGC	2 cut(s)	26, 268
PleI	GAGTC	1 cut(s)	539
PpsI	GAGTC	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	58
PsiI	TTATAA	1 cut(s)	500
Psp124BI	GAGCTC	1 cut(s)	219
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PvuII	CAGCTG	1 cut(s)	266
RsaI	GTAC	4 cut(s)	56, 197, 227, 463
RsaNI	GTAC	4 cut(s)	55, 196, 226, 462
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	25, 267
Sau3AI	GATC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	540
ScrFI	CCNGG	2 cut(s)	398, 399
SduI	GDGCHC	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	362
SmaI	CCCGGG	1 cut(s)	399
SseBI	AGGCCT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	252
SstI	GAGCTC	1 cut(s)	219
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	396, 397
StyI	CCWWGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	95
TaiI	ACGT	2 cut(s)	60, 83
TaqI	TCGA	1 cut(s)	362
TatI	WGTACW	1 cut(s)	225
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	2 cut(s)	24, 266
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	128, 155
TspMI	CCCGGG	1 cut(s)	397
XceI	RCATGY	2 cut(s)	24, 406
XmaI	CCCGGG	1 cut(s)	397
XspI	CTAG	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.