RchiOBHm_Chr7g0205621

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
23395020 .. 23395584
565 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18400

Sequence Viewer

Length: 351 bp
ATGCCAACCCAAAGGGTACCTTGCTGGAAAGATAAGCCGGTATTGGTATCGGTTTATGTGGAGAGGCCGAAGAGAAAGCCAGCTTCGTCAACTCATCATCATCATCACCACCACCACCACCACCACCATCATGTTCATCACACCATCAAGCGAGAGGTTATTTCTCATAGGGATGGTTCTAGTGGCAAAGGCTATACTACTAGTAGGAGAGCCGAGCTCCTTCAGTACTCTCAACGCCTTCGCCAATCTGCTAGAACAGCTCTAGCATCACCATTACCATCCATACCCTCTGTTCCAAATCCAAGCCACACCAGCAATCCTCAACCTCAGGCTGAGGTATCTTATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.35

Weight (kDa)

10.39

Isoelectric Point (pI)

57.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AcuI CTGAAG 1 cut(s) 206
AfaI GTAC 2 cut(s) 18, 227
AhlI ACTAGT 1 cut(s) 200
AluBI AGCT 3 cut(s) 83, 217, 260
AluI AGCT 3 cut(s) 83, 217, 260
Alw21I GWGCWC 1 cut(s) 219
AoxI GGCC 1 cut(s) 65
Asp718I GGTACC 1 cut(s) 16
AsuHPI GGTGA 2 cut(s) 98, 261
AxyI CCTNAGG 1 cut(s) 327
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 4 cut(s) 135, 152, 167, 286
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 5 cut(s) 180, 201, 252, 263, 349
BmcAI AGTACT 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 275
BplI GAGNNNNNCTC 2 cut(s) 201, 233
Bpu10I CCTNAGC 1 cut(s) 333
Bse118I RCCGGY 1 cut(s) 37
Bse21I CCTNAGG 1 cut(s) 327
BseGI GGATG 2 cut(s) 178, 278
BseMII CTCAG 2 cut(s) 324, 341
BshFI GGCC 1 cut(s) 67
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 219
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 325, 340
BspLI GGNNCC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 37
BssAI RCCGGY 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 327, 333
BstF5I GGATG 2 cut(s) 178, 278
BstMWI GCNNNNNNNGC 2 cut(s) 257, 312
Bsu36I CCTNAGG 1 cut(s) 327
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 178, 278
Cac8I GCNNGC 1 cut(s) 81
Cfr10I RCCGGY 1 cut(s) 37
Csp6I GTAC 2 cut(s) 17, 226
CviAII CATG 1 cut(s) 131
CviQI GTAC 2 cut(s) 17, 226
DdeI CTNAG 2 cut(s) 327, 333
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 206
Eco81I CCTNAGG 1 cut(s) 327
EcoICRI GAGCTC 1 cut(s) 217
EcoT38I GRGCYC 1 cut(s) 219
FaeI CATG 1 cut(s) 134
FaiI YATR 5 cut(s) 57, 132, 168, 195, 284
FalI AAGNNNNNCTT 1 cut(s) 36
FatI CATG 1 cut(s) 130
FokI GGATG 2 cut(s) 185, 265
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 5 cut(s) 180, 201, 252, 263, 349
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 38
Hin1II CATG 1 cut(s) 134
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 98, 261
Hpy166II GTNNAC 1 cut(s) 90
Hpy8I GTNNAC 1 cut(s) 90
HpyAV CCTTC 2 cut(s) 230, 248
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 312
HpyF3I CTNAG 2 cut(s) 327, 333
Hsp92II CATG 1 cut(s) 134
KpnI GGTACC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 222
LpnPI CCDG 5 cut(s) 10, 51, 93, 314, 325
LweI GCATC 1 cut(s) 275
MaeI CTAG 5 cut(s) 180, 201, 252, 263, 349
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 219
MnlI CCTC 6 cut(s) 57, 148, 298, 328, 330, 336
MslI CAYNNNNRTG 2 cut(s) 129, 171
MspI CCGG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 257, 312
NlaIII CATG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 238
Psp124BI GAGCTC 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 18
RsaI GTAC 2 cut(s) 18, 227
RsaNI GTAC 2 cut(s) 17, 226
RseI CAYNNNNRTG 2 cut(s) 129, 171
SacI GAGCTC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 227
SduI GDGCHC 1 cut(s) 219
SetI ASST 7 cut(s) 22, 85, 159, 219, 262, 328, 339
SfaNI GCATC 1 cut(s) 275
SmiMI CAYNNNNRTG 2 cut(s) 129, 171
SpeI ACTAGT 1 cut(s) 200
SspMI CTAG 5 cut(s) 180, 201, 252, 263, 349
SstI GAGCTC 1 cut(s) 219
TatI WGTACW 1 cut(s) 225
TspDTI ATGAA 1 cut(s) 125
XspI CTAG 5 cut(s) 180, 201, 252, 263, 349
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.