Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013681

Physical Location & Seq

Genomic Coordinates Reverse (-)

46212092 .. 46213091

Gene Structure 1000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00252150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTGCATACATATAGAACCCTCTTAACCATCAACGTTACCTGCCCCAAAAGTAAACCGGTGTTGCTGACCGTGTACGTGGAGAGGCCGAAGAGAAGACCATCTTCATCAACTCACCCTCACCAGCACCATCCTTATATTCAACACACCATCAAGCGAGAGGTTATTCATTACAGGCATGGTGCCGGTGGCCAAGGCTATATTAGTCGGAGAGCGGAGCTGCTTCAGTTCTCTCAACGCCTTCGTCTATCTGCTAGATCAGCAGCACCAGCATCCAAACCCTATTACCAAAACCAAAACCATACCAAGAGTCCAGCTGCCAAGATTGTGGCTGTCCGAAGAAAACCAAAGAATTCAGATCAAGCTCCCAGCTGCTTTGGAAACCGGATTTTTCCAAGTATTTTTGGACTTTGTACAAATTTCCAAGCTAAGAAAGAGAGGATGACGACAAAGAAACGCAGCGGCACTACCAGTACCAGCAATAAAATAAAATCTGCCATCAATTGCTTAAAGGGGCAAAAGAAACAGGGCTTTTTCTCCAAGTTATTCTCAGCATCCTCAAAGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.58

Weight (kDa)

11.12

Isoelectric Point (pI)

51.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013681)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g20360
prunus_persica	Prupe.5G055600_v2.0.a1
pyrus_communis	pycom06g03980
rosa_chinensis	RchiOBHm_Chr7g0205621
rosa_laevigata	RLG00000003370 RLG00000003371
rosa_multiflora	Rmu_ssc0000482.1_g000024
rosa_roxburghii	Rroxscaffold_3G00252140 Rroxscaffold_3G00252150
rosa_rugosa	Rorug07G0092100 Rorug07G0092200
rosa_samantha	Rh7AG223000 Rh7BG218000 Rh7CG235000 Rh7CG235900 Rh7CG236200 Rh7DG229900
rosa_wichuraiana	Rw7G019230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AccB1I	GGYRCC	1 cut(s)	182
AccBSI	CCGCTC	1 cut(s)	215
AciI	CCGC	2 cut(s)	215, 462
AclI	AACGTT	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	352, 418
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	3 cut(s)	77, 415, 475
AgeI	ACCGGT	1 cut(s)	58
AgsI	TTSAA	1 cut(s)	143
AluBI	AGCT	5 cut(s)	220, 317, 365, 372, 428
AluI	AGCT	5 cut(s)	220, 317, 365, 372, 428
AoxI	GGCC	2 cut(s)	86, 190
ApeKI	GCWGC	6 cut(s)	4, 220, 263, 317, 372, 459
ApoI	RAATTY	2 cut(s)	352, 418
AsiGI	ACCGGT	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	107, 113
BalI	TGGCCA	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	5 cut(s)	207, 275, 304, 359, 471
BccI	CCATC	5 cut(s)	38, 109, 138, 158, 506
BfaI	CTAG	1 cut(s)	255
BfuAI	ACCTGC	1 cut(s)	50
BisI	GCNGC	7 cut(s)	5, 221, 264, 318, 373, 460, 463
BlsI	GCNGC	7 cut(s)	6, 222, 265, 319, 374, 461, 464
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	2 cut(s)	281, 563
BpiI	GAAGAC	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	2 cut(s)	58, 384
Bse118I	RCCGGY	2 cut(s)	58, 185
Bse1I	ACTGG	1 cut(s)	471
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	4 cut(s)	130, 272, 447, 554
BseMII	CTCAG	1 cut(s)	564
BseNI	ACTGG	1 cut(s)	471
BseXI	GCAGC	5 cut(s)	207, 275, 304, 359, 471
BseYI	CCCAGC	1 cut(s)	368
BshFI	GGCC	2 cut(s)	88, 192
BshNI	GGYRCC	1 cut(s)	182
BshTI	ACCGGT	1 cut(s)	58
BsiSI	CCGG	3 cut(s)	59, 186, 385
BsnI	GGCC	2 cut(s)	88, 192
Bsp1407I	TGTACA	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	257, 358
BspACI	CCGC	2 cut(s)	215, 462
BspANI	GGCC	2 cut(s)	88, 192
BspCNI	CTCAG	1 cut(s)	563
BspLI	GGNNCC	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	50
BspT107I	GGYRCC	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	58, 185
BsrGI	TGTACA	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	471
BssAI	RCCGGY	2 cut(s)	58, 185
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	2 cut(s)	257, 358
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	86
BstAUI	TGTACA	1 cut(s)	413
BstBAI	YACGTR	1 cut(s)	79
BstDEI	CTNAG	2 cut(s)	429, 550
BstF5I	GGATG	4 cut(s)	130, 272, 447, 554
BstKTI	GATC	2 cut(s)	260, 361
BstMBI	GATC	2 cut(s)	257, 358
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 269
BstV1I	GCAGC	5 cut(s)	207, 275, 304, 359, 471
BstV2I	GAAGAC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	328
BsuRI	GGCC	2 cut(s)	88, 192
BtsCI	GGATG	4 cut(s)	130, 272, 447, 554
BveI	ACCTGC	1 cut(s)	50
Cfr10I	RCCGGY	2 cut(s)	58, 185
Csp6I	GTAC	3 cut(s)	76, 414, 474
CspAI	ACCGGT	1 cut(s)	58
CviAII	CATG	1 cut(s)	179
CviQI	GTAC	3 cut(s)	76, 414, 474
DdeI	CTNAG	2 cut(s)	429, 550
DpnI	GATC	2 cut(s)	259, 360
DpnII	GATC	2 cut(s)	257, 358
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	193
Eco57I	CTGAAG	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	182
FaiI	YATR	7 cut(s)	9, 13, 15, 138, 180, 201, 303
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	7 cut(s)	5, 221, 264, 318, 373, 460, 463
FokI	GGATG	4 cut(s)	117, 259, 454, 541
Fsp4HI	GCNGC	7 cut(s)	5, 221, 264, 318, 373, 460, 463
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	7 cut(s)	5, 221, 264, 318, 373, 460, 463
GsaI	CCCAGC	1 cut(s)	372
HaeIII	GGCC	2 cut(s)	88, 192
HapII	CCGG	3 cut(s)	59, 186, 385
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	1 cut(s)	310
HpaII	CCGG	3 cut(s)	59, 186, 385
HphI	GGTGA	2 cut(s)	107, 113
Hpy166II	GTNNAC	2 cut(s)	56, 76
Hpy188I	TCNGA	3 cut(s)	210, 338, 358
Hpy8I	GTNNAC	2 cut(s)	56, 76
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	2 cut(s)	36, 78
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 269
HpyF3I	CTNAG	2 cut(s)	429, 550
HpySE526I	ACGT	2 cut(s)	36, 78
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	257, 358
LmnI	GCTCC	2 cut(s)	217, 370
Lsp1109I	GCAGC	5 cut(s)	207, 275, 304, 359, 471
LweI	GCATC	2 cut(s)	281, 563
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	36, 78
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	2 cut(s)	259, 360
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	2 cut(s)	257, 358
MboII	GAAGA	4 cut(s)	96, 103, 108, 351
MfeI	CAATTG	1 cut(s)	502
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	3 cut(s)	352, 418, 502
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	6 cut(s)	32, 78, 129, 154, 432, 568
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	2 cut(s)	26, 509
Msp20I	TGGCCA	1 cut(s)	192
MspA1I	CMGCKG	3 cut(s)	317, 372, 462
MspI	CCGG	3 cut(s)	59, 186, 385
MunI	CAATTG	1 cut(s)	502
MwoI	GCNNNNNNNGC	2 cut(s)	260, 269
NdeII	GATC	2 cut(s)	257, 358
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	58
PkrI	GCNGC	7 cut(s)	6, 222, 265, 319, 374, 461, 464
PleI	GAGTC	1 cut(s)	318
PpsI	GAGTC	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	79
Psp1406I	AACGTT	1 cut(s)	36
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	184
PvuII	CAGCTG	2 cut(s)	317, 372
RsaI	GTAC	3 cut(s)	77, 415, 475
RsaNI	GTAC	3 cut(s)	76, 414, 474
SaqAI	TTAA	2 cut(s)	26, 509
SatI	GCNGC	7 cut(s)	5, 221, 264, 318, 373, 460, 463
Sau3AI	GATC	2 cut(s)	257, 358
SchI	GAGTC	1 cut(s)	319
SetI	ASST	9 cut(s)	39, 44, 81, 165, 222, 319, 367, 374, 430
SfaNI	GCATC	2 cut(s)	281, 563
Sse9I	AATT	3 cut(s)	352, 418, 502
SsiI	CCGC	2 cut(s)	215, 462
SspMI	CTAG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	2 cut(s)	39, 81
TasI	AATT	3 cut(s)	352, 418, 502
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	465
Tru1I	TTAA	2 cut(s)	26, 509
Tru9I	TTAA	2 cut(s)	26, 509
TseI	GCWGC	6 cut(s)	4, 220, 263, 317, 372, 459
TspDTI	ATGAA	2 cut(s)	96, 158
XapI	RAATTY	2 cut(s)	352, 418
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.