Rh7BG218000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0013681
Physical Location & Seq
Forward (+)
18647252 .. 18648408
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG218000.1

Sequence Viewer

Length: 516 bp
ATGCCAACCAAAAGGGTACCTTGCTGGAAAGAGAAGCCTGTATTGGTATCGGTTTATGTGGAGAGGCCGAAGAGAAGGCCAGCTTCATCAACTCATCATCATCATCATCACCACCACCACCACCATCATATTCATCAAACCATCAAGCGAGAGGTTATTTCTCATAGGGATGGTGCTGGTGGCAAAGGCTATACTACTAGTAGGAGAGCTGAGCTCCTTCAGTACTCTCAACGCCTTCGCCAATCTGCTAGAACACCTCTAGCATCACCATCACCATCCATACCCTCTGTTCCAAATCCAAGCCACACCAGCAATCCTCAACCTCAGGCTGAGATGGTCACTGTCCCAACAAAGCCAAAGAAAGCAAAAGCACCAACCTGCTTTGGCAACTGCGAAGTACCAACCATATTTGGGCCTCTTACAAGTTTCCACGCTAAGAAAACGAGGAATACAAGAAAGAAACGTGGCGGTAATGCCAGCAATAAAATAAAAGCTGCTATCAAAACCTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.19

Weight (kDa)

11.1

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 386
Acc65I GGTACC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 16
AciI CCGC 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 3 cut(s) 18, 224, 399
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 1 cut(s) 511
AhlI ACTAGT 1 cut(s) 197
AjuI GAANNNNNNNTTGG 2 cut(s) 26, 58
AluBI AGCT 4 cut(s) 83, 209, 214, 494
AluI AGCT 4 cut(s) 83, 209, 214, 494
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 3 cut(s) 65, 77, 413
ApeKI GCWGC 1 cut(s) 494
Asp718I GGTACC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 3 cut(s) 101, 258, 264
AxyI CCTNAGG 1 cut(s) 324
BanI GGYRCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 481
BccI CCATC 6 cut(s) 132, 149, 164, 277, 283, 328
BcuI ACTAGT 1 cut(s) 197
BfaI CTAG 3 cut(s) 198, 249, 260
BfuAI ACCTGC 1 cut(s) 386
BisI GCNGC 1 cut(s) 495
BlpI GCTNAGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 496
BmcAI AGTACT 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 18
BmsI GCATC 1 cut(s) 272
BplI GAGNNNNNCTC 2 cut(s) 198, 230
Bpu1102I GCTNAGC 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse21I CCTNAGG 1 cut(s) 324
BseGI GGATG 2 cut(s) 175, 275
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 3 cut(s) 201, 321, 338
BseXI GCAGC 1 cut(s) 481
BshFI GGCC 3 cut(s) 67, 79, 415
BshNI GGYRCC 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 216
BslFI GGGAC 1 cut(s) 329
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 329
BsnI GGCC 3 cut(s) 67, 79, 415
Bsp1286I GDGCHC 1 cut(s) 216
Bsp1720I GCTNAGC 1 cut(s) 210
BspACI CCGC 1 cut(s) 468
BspANI GGCC 3 cut(s) 67, 79, 415
BspCNI CTCAG 3 cut(s) 202, 322, 337
BspLI GGNNCC 1 cut(s) 18
BspMI ACCTGC 1 cut(s) 386
BspT107I GGYRCC 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 81, 478
BstDEI CTNAG 4 cut(s) 210, 324, 330, 435
BstF5I GGATG 2 cut(s) 175, 275
BstMWI GCNNNNNNNGC 1 cut(s) 309
BstV1I GCAGC 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 3 cut(s) 67, 79, 415
BtsCI GGATG 2 cut(s) 175, 275
BtsIMutI CAGTG 1 cut(s) 339
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 2 cut(s) 81, 478
Cfr13I GGNCC 1 cut(s) 413
Csp6I GTAC 3 cut(s) 17, 223, 398
CviQI GTAC 3 cut(s) 17, 223, 398
DdeI CTNAG 4 cut(s) 210, 324, 330, 435
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco53kI GAGCTC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 203
Eco81I CCTNAGG 1 cut(s) 324
EcoICRI GAGCTC 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 216
FaiI YATR 6 cut(s) 57, 129, 165, 192, 281, 407
FalI AAGNNNNNCTT 3 cut(s) 36, 67, 99
FaqI GGGAC 1 cut(s) 329
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 182, 262
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 3 cut(s) 198, 249, 260
GluI GCNGC 1 cut(s) 495
HaeIII GGCC 3 cut(s) 67, 79, 415
HphI GGTGA 3 cut(s) 101, 258, 264
HpyAV CCTTC 3 cut(s) 69, 227, 245
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 463
HpyF10VI GCNNNNNNNGC 1 cut(s) 309
HpyF3I CTNAG 4 cut(s) 210, 324, 330, 435
HpySE526I ACGT 1 cut(s) 463
KpnI GGTACC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 8 cut(s) 10, 51, 93, 162, 311, 322, 391, 490
Lsp1109I GCAGC 1 cut(s) 481
LweI GCATC 1 cut(s) 272
MaeI CTAG 3 cut(s) 198, 249, 260
MaeII ACGT 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 216
MnlI CCTC 8 cut(s) 57, 145, 267, 295, 327, 333, 426, 438
MslI CAYNNNNRTG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 309
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 337
PkrI GCNGC 1 cut(s) 496
Psp124BI GAGCTC 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 413
RsaI GTAC 3 cut(s) 18, 224, 399
RsaNI GTAC 3 cut(s) 17, 223, 398
RseI CAYNNNNRTG 1 cut(s) 168
SacI GAGCTC 1 cut(s) 216
SatI GCNGC 1 cut(s) 495
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 224
SduI GDGCHC 1 cut(s) 216
SfaNI GCATC 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 168
SpeI ACTAGT 1 cut(s) 197
SsiI CCGC 1 cut(s) 468
SspMI CTAG 3 cut(s) 198, 249, 260
SstI GAGCTC 1 cut(s) 216
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 466
TatI WGTACW 1 cut(s) 222
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 75, 122
TspRI CASTG 1 cut(s) 346
XspI CTAG 3 cut(s) 198, 249, 260
ZrmI AGTACT 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.