FvH4_5g21280
MYB Family

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Forward (+)
12806492 .. 12813095
6604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21280.t4

Sequence Viewer

Length: 1746 bp
ATGGTTTGCACTGCCAGTGATTTGGAAGGGTGGAAAGATTTCCCAAAGGGCCTTAGAGTTCTTCTCCTTGATGAAGACACCGGTTATTCTGCTGAGATAAGATCAAAGCTTGAAGCCATGGATTATATTGTTACTACATTCCGCAATGAAACCGAAGCATTGTCAGCGTTTTCTAACAACCCTGAAAGTTTCCATGTTGCCATCATTGAGGTCAATACAAGCAAAGGTGATTGGGGTTTCAAATTTCTTGACACTGCCAAGGACATGCCGATCATAATGACTTCAAACATTCATTGCTTGAACACCATGATGAAGTGTATAGCGCTTGGTGCAGTTGAGTTTCTGCGGAAACCTCTCTGTGAAGAGAAACTTCGGAATATTTGGCAGCATGTTGTTCATAAGGCATTCAATGCAGGAGGGAAAGCCGTCTCTGAATCAATCAAGTCTATTAAAGAATCTGTACTACCCACGTTGCAGCCCAAATTGGAAAATGAACCACCGAAATGCAAAATCTCAGTAGTAACAGAAAACGCTGCAAGGGTTCCTGAACATGACCATGAACAATCCACCGGAAATGACAAGTACCCAGCTCCTTCGACGCCACAAATTAAACAGGGATCTCGATTATTGGATGATGGGGATTGCCAAGAACAAACTAACTCATCAGAGAAAGAGAGTGGGGAGCATGATGGTGAATCTAAATCTGTCGAAACTACATGTGGCAATGCTGATGATACTCTTCAAATAAGTGAACCTCAAATGCCTGAGAAGATAGTGGTCAAACAGGAAAATGACTCTGCTGATGCTTCTAAGCTTGAAAATAATTTGTCTCAGCCTCATATTAGAGACTGTACCAATGATACTGGTTGTGCTACTGAAAATCTGAGTAAAGCATCAGGTCTCAATCATTCATACAAATCTAGTAGGAAGAAGATGAAGGTAGACTGGACGCCAGAACTGCACAAGAAATTTGTCCATGCAGTGGAACAATTGGGTGTAGATCAAGCCATTCCTTCTCGAATACTTGAGCTTATGAAAGCTGAAGGTTTGACAAGGCATAATGTAGCAAGCCATCTCCAGAAGTATCGCATGCACAAGAGACACATCTTGCCCAAGGATGAAGACCGCAGACTGTTACATCCTACAGATCCAACTCAAATGAGTTATTATTCTCATAAGCCCATCATGGCTTTTCCCCCATATCATTACAACAGTGCTGTATCAATGCCAGGGGTGTATCCTATGTGGGGCCAACCTGCCAGCCACCCAGCCAATATCCAGATGTGGGGACAACCTAGCTATCCTCCATGGCAAGCGTCAGAAAATTGGCATTGGAAGCCTTCTTATCAAGCGTTACATGCTGACGCTTGGGGTTGCCCTGTAATGCCTCAACCTCTGCAGGGTGGTTATTCCTCTTATCCTCAAACTGCATCAGGGGTTCACAATCCAAATGTAGTAGACAATGGCTGCAGCTTGCCACATAACTCTTCAGAACTTCATCCGATTGCATCAGTGGTGATCAACGCAAATGTAGCAGATAATGGCTGCAGTATGGCACATGATTCTTCTGAACTTAATCTGGCAGAGGAAATCATTGATAAGGTTATGAAGGAGGCAATAAGTAAGCCATGGCTACCCCTTCCTTTAGGCCTTAAGCTTCCTTCCACTGAAGGTGTACTAGCTGAACTCTCAAGGCAAGGCATCTGCAACATCCCTCCTCCGATCGACGGCTCTAACTCCCGTTGA

Protein Analysis

582

Amino Acids

64.51

Weight (kDa)

5.87

Isoelectric Point (pI)

52.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 20 - 126 1.1e-07 Response regulator receiver domain
Myb_DNA-binding PF00249 313 - 363 2.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1264
AccB7I CCANNNNNTGG 1 cut(s) 982
AccI GTMKAC 2 cut(s) 942, 1458
AciI CCGC 3 cut(s) 142, 346, 1126
AclWI GGATC 2 cut(s) 625, 1142
AcsI RAATTY 2 cut(s) 242, 968
AcuI CTGAAG 3 cut(s) 1062, 1473, 1689
AcyI GRCGYC 2 cut(s) 599, 950
AfaI GTAC 4 cut(s) 462, 584, 853, 1677
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 5 cut(s) 982, 1247, 1285, 1400, 1727
AflII CTTAAG 1 cut(s) 1652
AflIII ACRYGT 1 cut(s) 716
AgeI ACCGGT 1 cut(s) 80
AgsI TTSAA 7 cut(s) 113, 241, 285, 301, 409, 743, 818
AjnI CCWGG 1 cut(s) 1228
AluBI AGCT 9 cut(s) 109, 590, 814, 1030, 1040, 1299, 1473, 1657, 1682
AluI AGCT 9 cut(s) 109, 590, 814, 1030, 1040, 1299, 1473, 1657, 1682
Alw26I GTCTC 5 cut(s) 433, 834, 840, 905, 1093
AlwI GGATC 2 cut(s) 625, 1142
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 3 cut(s) 49, 1249, 1648
ApeKI GCWGC 6 cut(s) 385, 475, 533, 1467, 1470, 1545
ApoI RAATTY 2 cut(s) 242, 968
AsiGI ACCGGT 1 cut(s) 80
Asp700I GAANNNNTTC 1 cut(s) 38
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 49, 1249
AsuHPI GGTGA 3 cut(s) 239, 704, 1528
BbsI GAAGAC 2 cut(s) 81, 1128
BbvI GCAGC 6 cut(s) 397, 487, 520, 1454, 1482, 1532
BccI CCATC 5 cut(s) 209, 629, 683, 1080, 1190
BceAI ACGGC 2 cut(s) 410, 1744
BciT130I CCWGG 1 cut(s) 1230
BciVI GTATCC 1 cut(s) 1248
BclI TGATCA 1 cut(s) 1518
BcoDI GTCTC 5 cut(s) 433, 834, 840, 905, 1093
BfaI CTAG 3 cut(s) 921, 1296, 1679
BfmI CTRYAG 4 cut(s) 1143, 1397, 1468, 1546
BfoI RGCGCY 1 cut(s) 326
BfrI CTTAAG 1 cut(s) 1652
BfuAI ACCTGC 1 cut(s) 1264
BfuI GTATCC 1 cut(s) 1248
BisI GCNGC 6 cut(s) 386, 476, 534, 1468, 1471, 1546
BlsI GCNGC 6 cut(s) 387, 477, 535, 1469, 1472, 1547
Bme1390I CCNGG 1 cut(s) 1230
BmgT120I GGNCC 2 cut(s) 49, 1249
BmiI GGNNCC 2 cut(s) 543, 1250
BmrFI CCNGG 1 cut(s) 1230
BmsI GCATC 5 cut(s) 793, 902, 1439, 1517, 1710
BpiI GAAGAC 2 cut(s) 81, 1128
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 1061
BpuEI CTTGAG 2 cut(s) 1046, 1675
BsaHI GRCGYC 2 cut(s) 599, 950
BsaI GGTCTC 1 cut(s) 905
BsaJI CCNNGG 6 cut(s) 117, 258, 1113, 1229, 1307, 1628
BsaWI WCCGGW 2 cut(s) 80, 569
Bsc4I CCNNNNNNNGG 5 cut(s) 982, 1247, 1285, 1400, 1727
Bse118I RCCGGY 1 cut(s) 80
Bse1I ACTGG 3 cut(s) 15, 868, 950
Bse3DI GCAATG 3 cut(s) 151, 292, 730
BseBI CCWGG 1 cut(s) 1230
BseDI CCNNGG 6 cut(s) 117, 258, 1113, 1229, 1307, 1628
BseGI GGATG 5 cut(s) 637, 1123, 1138, 1498, 1710
BseLI CCNNNNNNNGG 5 cut(s) 982, 1247, 1285, 1400, 1727
BseMI GCAATG 3 cut(s) 151, 292, 730
BseMII CTCAG 5 cut(s) 84, 528, 756, 845, 875
BseNI ACTGG 3 cut(s) 15, 868, 950
BseRI GAGGAG 1 cut(s) 1707
BseXI GCAGC 6 cut(s) 397, 487, 520, 1454, 1482, 1532
BseYI CCCAGC 2 cut(s) 586, 1267
BsgI GTGCAG 2 cut(s) 351, 944
Bsh1285I CGRYCG 1 cut(s) 1725
BshFI GGCC 3 cut(s) 51, 1251, 1650
BshTI ACCGGT 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 1725
BsiSI CCGG 2 cut(s) 81, 570
BslFI GGGAC 1 cut(s) 1302
BslI CCNNNNNNNGG 5 cut(s) 982, 1247, 1285, 1400, 1727
BsmAI GTCTC 5 cut(s) 433, 834, 840, 905, 1093
BsmBI CGTCTC 1 cut(s) 433
BsmFI GGGAC 1 cut(s) 1302
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 3 cut(s) 51, 1251, 1650
Bso31I GGTCTC 1 cut(s) 905
Bsp143I GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
Bsp19I CCATGG 3 cut(s) 117, 1307, 1628
BspACI CCGC 3 cut(s) 142, 346, 1126
BspANI GGCC 3 cut(s) 51, 1251, 1650
BspCNI CTCAG 5 cut(s) 85, 527, 757, 844, 876
BspLI GGNNCC 2 cut(s) 543, 1250
BspMAI CTGCAG 3 cut(s) 1401, 1472, 1550
BspMI ACCTGC 1 cut(s) 1264
BspPI GGATC 2 cut(s) 625, 1142
BspTI CTTAAG 1 cut(s) 1652
BspTNI GGTCTC 1 cut(s) 905
BsrDI GCAATG 3 cut(s) 151, 292, 730
BsrFI RCCGGY 1 cut(s) 80
BsrI ACTGG 3 cut(s) 15, 868, 950
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 6 cut(s) 117, 258, 1113, 1229, 1307, 1628
BssMI GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
BssNI GRCGYC 2 cut(s) 599, 950
BssT1I CCWWGG 5 cut(s) 117, 258, 1113, 1307, 1628
Bst2UI CCWGG 1 cut(s) 1230
Bst4CI ACNGT 3 cut(s) 851, 1134, 1214
Bst6I CTCTTC 3 cut(s) 357, 744, 1492
BstACI GRCGYC 2 cut(s) 599, 950
BstAFI CTTAAG 1 cut(s) 1652
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 5 cut(s) 1069, 1091, 1261, 1314, 1475
BstDEI CTNAG 7 cut(s) 53, 93, 514, 765, 810, 831, 884
BstDSI CCRYGG 3 cut(s) 117, 1307, 1628
BstF5I GGATG 5 cut(s) 637, 1123, 1138, 1498, 1710
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 7 cut(s) 104, 273, 620, 1003, 1150, 1521, 1725
BstMAI GTCTC 5 cut(s) 433, 834, 840, 905, 1093
BstMBI GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
BstMCI CGRYCG 1 cut(s) 1725
BstMWI GCNNNNNNNGC 7 cut(s) 164, 329, 410, 958, 1336, 1358, 1532
BstNI CCWGG 1 cut(s) 1230
BstNSI RCATGY 5 cut(s) 268, 392, 720, 1093, 1361
BstSCI CCNGG 1 cut(s) 1228
BstSFI CTRYAG 4 cut(s) 1143, 1397, 1468, 1546
BstV1I GCAGC 6 cut(s) 397, 487, 520, 1454, 1482, 1532
BstV2I GAAGAC 2 cut(s) 81, 1128
BstX2I RGATCY 2 cut(s) 617, 1147
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 2 cut(s) 617, 1147
BsuI GTATCC 1 cut(s) 1248
BsuRI GGCC 3 cut(s) 51, 1251, 1650
BtgI CCRYGG 3 cut(s) 117, 1307, 1628
BtsCI GGATG 5 cut(s) 637, 1123, 1138, 1498, 1710
BtsI GCAGTG 3 cut(s) 9, 252, 987
BtsIMutI CAGTG 7 cut(s) 9, 22, 252, 987, 1219, 1518, 1665
BveI ACCTGC 1 cut(s) 1264
Cac8I GCNNGC 5 cut(s) 1069, 1091, 1261, 1314, 1475
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 49, 1249
CseI GACGC 4 cut(s) 607, 958, 1305, 1373
Csp6I GTAC 4 cut(s) 461, 583, 852, 1676
CspAI ACCGGT 1 cut(s) 80
CviQI GTAC 4 cut(s) 461, 583, 852, 1676
DdeI CTNAG 7 cut(s) 53, 93, 514, 765, 810, 831, 884
DpnI GATC 7 cut(s) 103, 272, 619, 1002, 1149, 1520, 1724
DpnII GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
Eam1104I CTCTTC 3 cut(s) 357, 744, 1492
EarI CTCTTC 3 cut(s) 357, 744, 1492
Eco130I CCWWGG 5 cut(s) 117, 258, 1113, 1307, 1628
Eco147I AGGCCT 1 cut(s) 1650
Eco31I GGTCTC 1 cut(s) 905
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 1062, 1473, 1689
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 1228
EcoT14I CCWWGG 5 cut(s) 117, 258, 1113, 1307, 1628
ErhI CCWWGG 5 cut(s) 117, 258, 1113, 1307, 1628
Esp3I CGTCTC 1 cut(s) 433
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FaqI GGGAC 1 cut(s) 1302
FbaI TGATCA 1 cut(s) 1518
FblI GTMKAC 2 cut(s) 942, 1458
Fnu4HI GCNGC 6 cut(s) 386, 476, 534, 1468, 1471, 1546
FokI GGATG 5 cut(s) 644, 1125, 1130, 1485, 1697
Fsp4HI GCNGC 6 cut(s) 386, 476, 534, 1468, 1471, 1546
FspBI CTAG 3 cut(s) 921, 1296, 1679
GlaI GCGC 1 cut(s) 324
GluI GCNGC 6 cut(s) 386, 476, 534, 1468, 1471, 1546
GsaI CCCAGC 2 cut(s) 590, 1271
GsuI CTGGAG 1 cut(s) 1061
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 3 cut(s) 51, 1251, 1650
HapII CCGG 2 cut(s) 81, 570
HgaI GACGC 4 cut(s) 607, 958, 1305, 1373
HhaI GCGC 1 cut(s) 325
Hin1I GRCGYC 2 cut(s) 599, 950
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 3 cut(s) 107, 812, 1655
HinfI GANTC 5 cut(s) 434, 455, 695, 794, 1562
HpaII CCGG 2 cut(s) 81, 570
HphI GGTGA 3 cut(s) 239, 704, 1528
Hpy166II GTNNAC 5 cut(s) 752, 943, 1441, 1459, 1676
Hpy188I TCNGA 9 cut(s) 375, 433, 667, 885, 1321, 1492, 1503, 1570, 1722
Hpy188III TCNNGA 6 cut(s) 248, 545, 621, 1017, 1078, 1279
Hpy8I GTNNAC 5 cut(s) 752, 943, 1441, 1459, 1676
Hpy99I CGWCG 2 cut(s) 601, 1730
HpyCH4III ACNGT 3 cut(s) 851, 1134, 1214
HpyCH4IV ACGT 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 329, 410, 958, 1336, 1358, 1532
HpyF3I CTNAG 7 cut(s) 53, 93, 514, 765, 810, 831, 884
HpySE526I ACGT 1 cut(s) 470
Hsp92I GRCGYC 2 cut(s) 599, 950
HspAI GCGC 1 cut(s) 323
Ksp22I TGATCA 1 cut(s) 1518
Kzo9I GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
LmnI GCTCC 2 cut(s) 595, 682
Lsp1109I GCAGC 6 cut(s) 397, 487, 520, 1454, 1482, 1532
LweI GCATC 5 cut(s) 793, 902, 1439, 1517, 1710
MaeI CTAG 3 cut(s) 921, 1296, 1679
MaeII ACGT 1 cut(s) 470
MaeIII GTNAC 4 cut(s) 130, 520, 1134, 1353
MalI GATC 7 cut(s) 103, 272, 619, 1002, 1149, 1520, 1724
MboI GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
MfeI CAATTG 1 cut(s) 989
MflI RGATCY 2 cut(s) 617, 1147
MluCI AATT 7 cut(s) 242, 482, 606, 823, 968, 989, 1324
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 1 cut(s) 1175
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 4 cut(s) 450, 609, 1575, 1653
MslI CAYNNNNRTG 4 cut(s) 308, 502, 555, 690
MspCI CTTAAG 1 cut(s) 1652
MspI CCGG 2 cut(s) 81, 570
MspR9I CCNGG 1 cut(s) 1230
MunI CAATTG 1 cut(s) 989
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 1230
MwoI GCNNNNNNNGC 7 cut(s) 164, 329, 410, 958, 1336, 1358, 1532
NcoI CCATGG 3 cut(s) 117, 1307, 1628
NdeII GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
NlaIV GGNNCC 2 cut(s) 543, 1250
NspI RCATGY 5 cut(s) 268, 392, 720, 1093, 1361
PaeI GCATGC 1 cut(s) 1093
PceI AGGCCT 1 cut(s) 1650
PciI ACATGT 1 cut(s) 716
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 434, 455, 695, 1562
PflMI CCANNNNNTGG 1 cut(s) 982
PinAI ACCGGT 1 cut(s) 80
PkrI GCNGC 6 cut(s) 387, 477, 535, 1469, 1472, 1547
Ple19I CGATCG 1 cut(s) 1725
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
PscI ACATGT 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 1228
PspFI CCCAGC 2 cut(s) 586, 1267
PspGI CCWGG 1 cut(s) 1228
PspN4I GGNNCC 2 cut(s) 543, 1250
PspPI GGNCC 2 cut(s) 49, 1249
PstI CTGCAG 3 cut(s) 1401, 1472, 1550
PsuI RGATCY 2 cut(s) 617, 1147
PvuI CGATCG 1 cut(s) 1725
RsaI GTAC 4 cut(s) 462, 584, 853, 1677
RsaNI GTAC 4 cut(s) 461, 583, 852, 1676
RseI CAYNNNNRTG 4 cut(s) 308, 502, 555, 690
SaqAI TTAA 4 cut(s) 450, 609, 1575, 1653
SatI GCNGC 6 cut(s) 386, 476, 534, 1468, 1471, 1546
Sau3AI GATC 7 cut(s) 101, 270, 617, 1000, 1147, 1518, 1722
Sau96I GGNCC 2 cut(s) 49, 1249
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 1 cut(s) 1230
SfaNI GCATC 5 cut(s) 793, 902, 1439, 1517, 1710
SfcI CTRYAG 4 cut(s) 1143, 1397, 1468, 1546
SmiMI CAYNNNNRTG 4 cut(s) 308, 502, 555, 690
SmlI CTYRAG 3 cut(s) 1025, 1652, 1690
SmoI CTYRAG 3 cut(s) 1025, 1652, 1690
SphI GCATGC 1 cut(s) 1093
Sse9I AATT 7 cut(s) 242, 482, 606, 823, 968, 989, 1324
SseBI AGGCCT 1 cut(s) 1650
SsiI CCGC 3 cut(s) 142, 346, 1126
SspI AATATT 1 cut(s) 379
SspMI CTAG 3 cut(s) 921, 1296, 1679
StuI AGGCCT 1 cut(s) 1650
StyD4I CCNGG 1 cut(s) 1228
StyI CCWWGG 5 cut(s) 117, 258, 1113, 1307, 1628
TaaI ACNGT 3 cut(s) 851, 1134, 1214
TaiI ACGT 1 cut(s) 473
TaqI TCGA 5 cut(s) 596, 622, 708, 1018, 1725
TasI AATT 7 cut(s) 242, 482, 606, 823, 968, 989, 1324
TatI WGTACW 2 cut(s) 460, 1675
TfiI GAWTC 4 cut(s) 434, 455, 695, 1562
Tru1I TTAA 4 cut(s) 450, 609, 1575, 1653
Tru9I TTAA 4 cut(s) 450, 609, 1575, 1653
TscAI CASTG 7 cut(s) 16, 22, 259, 987, 1219, 1518, 1672
TseI GCWGC 6 cut(s) 385, 475, 533, 1467, 1470, 1545
TspRI CASTG 7 cut(s) 16, 22, 259, 987, 1219, 1518, 1672
Van91I CCANNNNNTGG 1 cut(s) 982
Vha464I CTTAAG 1 cut(s) 1652
XapI RAATTY 2 cut(s) 242, 968
XceI RCATGY 5 cut(s) 268, 392, 720, 1093, 1361
XmiI GTMKAC 2 cut(s) 942, 1458
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 921, 1296, 1679
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.