Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240673.1

Orthogroup ID

OG0001396

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 744

Gene Structure 744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240673.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

atgcagaagtatcggatgcacaagagacacatcttgcccaaggatgaagaccgcagactgttacatcctagagatccaaatcaaatgagttattatcctcataaacccatcatggcttttcccccatatcattataacagtgctgtatcaatgccaccggtctatcctatgtggggccaacctgccagccacccggccaatatccaaatgtggggatcacctagctatcctccatggcaggtgtcagaaagttggcattggaatccttcttatccagggttgcatgctgatgcttggggttgccctgtaatgcctcaacctctgcaaggtggttattcctcttatcctcaaattgcatcgggggttaacaatacaaatgtagtagacaatggctgcagcatgccacataactcttcgaaacatcatccg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

143

Amino Acids

16.42

Weight (kDa)

8.91

Isoelectric Point (pI)

79.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020
fragaria_vesca	FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280
malus_domestica	MD06G1039500.v1.1 MD16G1269900.v1.1
prunus_persica	Prupe.5G045000_v2.0.a1 Prupe.5G045000_v2.0.a1 Prupe.5G045000_v2.0.a1
pyrus_communis	pycom06g03320 pycom16g23910
rosa_chinensis	RchiOBHm_Chr7g0208371
rosa_laevigata	RLG00000003216
rosa_multiflora	Rmu_co8240673.1_g000001 Rmu_ssc0000063.1_g000009
rosa_roxburghii	Rroxscaffold_3G00250510
rosa_rugosa	Rorug07G0104000 Rorug07G0104100 Rorug07G0104200 Rorug07G0104200 Rorug07G0104200 Rorug07G0104300
rosa_samantha	Rh7AG238600 Rh7BG234000 Rh7CG253900 Rh7DG244200
rosa_wichuraiana	Rw7G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
AarI	CACCTGC	1 cut(s)	229
Acc36I	ACCTGC	2 cut(s)	190, 229
AccI	GTMKAC	1 cut(s)	384
AciI	CCGC	1 cut(s)	52
AclWI	GGATC	2 cut(s)	68, 223
AcoI	YGGCCR	1 cut(s)	195
AfiI	CCNNNNNNNGG	3 cut(s)	173, 211, 326
AgeI	ACCGGT	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	2 cut(s)	68, 223
AoxI	GGCC	2 cut(s)	175, 195
ApeKI	GCWGC	2 cut(s)	393, 396
AsiGI	ACCGGT	1 cut(s)	157
AspS9I	GGNCC	1 cut(s)	175
AsuC2I	CCSGG	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	210
AsuII	TTCGAA	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	380, 408
BccI	CCATC	1 cut(s)	116
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	69, 222
BfmI	CTRYAG	1 cut(s)	394
BfuAI	ACCTGC	2 cut(s)	190, 229
BisI	GCNGC	2 cut(s)	394, 397
BlsI	GCNGC	2 cut(s)	395, 398
Bme1390I	CCNGG	2 cut(s)	194, 276
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	194, 276
BmsI	GCATC	3 cut(s)	6, 280, 365
BpiI	GAAGAC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	39, 233, 275
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 211, 326
Bse118I	RCCGGY	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	3 cut(s)	39, 233, 275
BseGI	GGATG	4 cut(s)	21, 49, 64, 424
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	3 cut(s)	173, 211, 326
BseXI	GCAGC	2 cut(s)	380, 408
BshFI	GGCC	2 cut(s)	177, 197
BshTI	ACCGGT	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	158, 194
BslI	CCNNNNNNNGG	3 cut(s)	173, 211, 326
BsmAI	GTCTC	1 cut(s)	19
BsnI	GGCC	2 cut(s)	177, 197
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	73, 215
Bsp19I	CCATGG	1 cut(s)	233
BspACI	CCGC	1 cut(s)	52
BspANI	GGCC	2 cut(s)	177, 197
BspLI	GGNNCC	1 cut(s)	176
BspMAI	CTGCAG	1 cut(s)	398
BspMI	ACCTGC	2 cut(s)	190, 229
BspPI	GGATC	2 cut(s)	68, 223
BspT104I	TTCGAA	1 cut(s)	416
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	39, 233, 275
BssMI	GATC	2 cut(s)	73, 215
BssT1I	CCWWGG	2 cut(s)	39, 233
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	60, 140
Bst6I	CTCTTC	1 cut(s)	418
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	187, 285, 401
BstDSI	CCRYGG	1 cut(s)	233
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	21, 49, 64, 424
BstKTI	GATC	2 cut(s)	76, 218
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	2 cut(s)	73, 215
BstNI	CCWGG	1 cut(s)	276
BstNSI	RCATGY	2 cut(s)	287, 403
BstSCI	CCNGG	2 cut(s)	192, 274
BstSFI	CTRYAG	1 cut(s)	394
BstV1I	GCAGC	2 cut(s)	380, 408
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	2 cut(s)	177, 197
BtgI	CCRYGG	1 cut(s)	233
BtsCI	GGATG	4 cut(s)	21, 49, 64, 424
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	2 cut(s)	190, 229
Cac8I	GCNNGC	3 cut(s)	187, 285, 401
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	175
CspAI	ACCGGT	1 cut(s)	157
CviAII	CATG	4 cut(s)	112, 234, 284, 400
CviJI	RGCY	6 cut(s)	116, 177, 189, 197, 225, 393
CviKI_1	RGCY	6 cut(s)	116, 177, 189, 197, 225, 393
DpnI	GATC	2 cut(s)	75, 217
DpnII	GATC	2 cut(s)	73, 215
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	418
EarI	CTCTTC	1 cut(s)	418
Eco130I	CCWWGG	2 cut(s)	39, 233
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	2 cut(s)	39, 233
ErhI	CCWWGG	2 cut(s)	39, 233
FaeI	CATG	4 cut(s)	115, 237, 287, 403
FaiI	YATR	9 cut(s)	102, 113, 127, 135, 170, 235, 285, 401, 408
FatI	CATG	4 cut(s)	111, 233, 283, 399
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	2 cut(s)	394, 397
FokI	GGATG	4 cut(s)	28, 51, 56, 411
Fsp4HI	GCNGC	2 cut(s)	394, 397
FspBI	CTAG	2 cut(s)	69, 222
GluI	GCNGC	2 cut(s)	394, 397
HaeIII	GGCC	2 cut(s)	177, 197
HapII	CCGG	2 cut(s)	158, 194
Hin1II	CATG	4 cut(s)	115, 237, 287, 403
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	262
HpaI	GTTAAC	1 cut(s)	367
HpaII	CCGG	2 cut(s)	158, 194
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	367, 385
Hpy188I	TCNGA	2 cut(s)	15, 247
Hpy8I	GTNNAC	2 cut(s)	367, 385
HpyAV	CCTTC	1 cut(s)	276
HpyCH4III	ACNGT	2 cut(s)	60, 140
HpyCH4V	TGCA	6 cut(s)	4, 19, 283, 325, 356, 396
Hsp92II	CATG	4 cut(s)	115, 237, 287, 403
KspAI	GTTAAC	1 cut(s)	367
Kzo9I	GATC	2 cut(s)	73, 215
LpnPI	CCDG	8 cut(s)	171, 195, 199, 207, 224, 261, 288, 318
Lsp1109I	GCAGC	2 cut(s)	380, 408
LweI	GCATC	3 cut(s)	6, 280, 365
MaeI	CTAG	2 cut(s)	69, 222
MaeIII	GTNAC	1 cut(s)	60
MalI	GATC	2 cut(s)	75, 217
MboI	GATC	2 cut(s)	73, 215
MboII	GAAGA	2 cut(s)	59, 405
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	351
MnlI	CCTC	6 cut(s)	108, 240, 324, 330, 349, 357
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	288
MspI	CCGG	2 cut(s)	158, 194
MspR9I	CCNGG	2 cut(s)	194, 276
MvaI	CCWGG	1 cut(s)	276
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	233
NdeII	GATC	2 cut(s)	73, 215
NlaIII	CATG	4 cut(s)	115, 237, 287, 403
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	2 cut(s)	287, 403
NspV	TTCGAA	1 cut(s)	416
PaeI	GCATGC	2 cut(s)	287, 403
PaqCI	CACCTGC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	262
PinAI	ACCGGT	1 cut(s)	157
PkrI	GCNGC	2 cut(s)	395, 398
PsiI	TTATAA	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	175
PstI	CTGCAG	1 cut(s)	398
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	2 cut(s)	394, 397
Sau3AI	GATC	2 cut(s)	73, 215
Sau96I	GGNCC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	194, 276
SetI	ASST	6 cut(s)	184, 223, 227, 243, 322, 331
SfaNI	GCATC	3 cut(s)	6, 280, 365
SfcI	CTRYAG	1 cut(s)	394
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	288
SphI	GCATGC	2 cut(s)	287, 403
Sse9I	AATT	1 cut(s)	351
SsiI	CCGC	1 cut(s)	52
SspMI	CTAG	2 cut(s)	69, 222
StyD4I	CCNGG	2 cut(s)	192, 274
StyI	CCWWGG	2 cut(s)	39, 233
TaaI	ACNGT	2 cut(s)	60, 140
TaqI	TCGA	1 cut(s)	416
TasI	AATT	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	262
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	2 cut(s)	393, 396
TspDTI	ATGAA	1 cut(s)	60
TspRI	CASTG	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	324
XceI	RCATGY	2 cut(s)	287, 403
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	69, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.