Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001396

Physical Location & Seq

Genomic Coordinates Forward (+)

8200668 .. 8203331

Gene Structure 2664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0104200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGAGCAGACTTTATGGGGTCACTTACCGCTACTGGTCCGGTCAAATTCCAAGGACTCGGTGGAGTACATTCTTCAAACCCTTTGGAGGACCCGAAAGACCGGTCTGGACCGGGCCGATCGGGACATAATCCGAGATATGCTCCAGCTTCAAAACGAATCGGACCTCGACCCGCTTTTGGTGTGTCTTCGGATTTTGATTCGGAGATGCGTGTACGAAAATGTGACGAGGGATGAGATTCAGAAGCTGTTTCCCGATGAGGTGTTGCCGGAATTACAGAGGCTGTTGACGCTTTTGCTGCAGAAGTTTCAAAGAGAATGGCGGGAAGATGCACTCAAGGACCAGGGTGCTTTGCCGCGGTTGAAGACGATGACATGGGACATGGCGAGTCCGGAGGCAGAATTTGCTGAGCCTGTTGCTGTTATCAACTTGAAGCTTCTAAATGATTCTCAGTCTCGTGTTAAAGAAACAGAAGTGAAGTTTGAATTGGCTAATGATACTCTAGAAACCATGCTGAATTCCATGTATTGCATTAGAGATCAGTTTTCTAACGTGGGTGAAGCATCAAATGATCATTTATCTCAAGATGCTAATGCATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

200

Amino Acids

23.33

Weight (kDa)

4.86

Isoelectric Point (pI)

42.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020 AT4G18020
fragaria_vesca	FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280 FvH4_5g21280
malus_domestica	MD06G1039500.v1.1 MD16G1269900.v1.1
prunus_persica	Prupe.5G045000_v2.0.a1 Prupe.5G045000_v2.0.a1 Prupe.5G045000_v2.0.a1
pyrus_communis	pycom06g03320 pycom16g23910
rosa_chinensis	RchiOBHm_Chr7g0208371
rosa_laevigata	RLG00000003216
rosa_multiflora	Rmu_co8240673.1_g000001 Rmu_ssc0000063.1_g000009
rosa_roxburghii	Rroxscaffold_3G00250510
rosa_rugosa	Rorug07G0104000 Rorug07G0104100 Rorug07G0104200 Rorug07G0104200 Rorug07G0104200 Rorug07G0104300
rosa_samantha	Rh7AG238600 Rh7BG234000 Rh7CG253900 Rh7DG244200
rosa_wichuraiana	Rw7G020320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	5 cut(s)	29, 173, 322, 356, 358
AcsI	RAATTY	3 cut(s)	46, 401, 517
AfaI	GTAC	2 cut(s)	68, 215
AfiI	CCNNNNNNNGG	2 cut(s)	87, 178
AgeI	ACCGGT	1 cut(s)	101
AgsI	TTSAA	6 cut(s)	77, 152, 311, 364, 433, 485
AjnI	CCWGG	1 cut(s)	342
AjuI	GAANNNNNNNTTGG	2 cut(s)	470, 502
AluBI	AGCT	3 cut(s)	148, 247, 436
AluI	AGCT	3 cut(s)	148, 247, 436
Alw26I	GTCTC	1 cut(s)	459
AlwNI	CAGNNNCTG	2 cut(s)	247, 283
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	298
ApoI	RAATTY	3 cut(s)	46, 401, 517
ArsI	GACNNNNNNTTYG	2 cut(s)	88, 120
AsiGI	ACCGGT	1 cut(s)	101
AspS9I	GGNCC	6 cut(s)	37, 90, 109, 114, 163, 340
AsuC2I	CCSGG	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	5 cut(s)	37, 90, 109, 163, 340
BauI	CACGAG	1 cut(s)	456
BbsI	GAAGAC	2 cut(s)	179, 371
BbvI	GCAGC	1 cut(s)	285
BciT130I	CCWGG	1 cut(s)	344
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	299, 356
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	2 cut(s)	300, 357
Bme1390I	CCNGG	2 cut(s)	113, 344
Bme18I	GGWCC	5 cut(s)	37, 90, 109, 163, 340
BmgT120I	GGNCC	6 cut(s)	37, 90, 109, 114, 163, 340
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	113, 344
BmsI	GCATC	4 cut(s)	197, 319, 572, 577
BpiI	GAAGAC	2 cut(s)	179, 371
BplI	GAGNNNNNCTC	2 cut(s)	126, 158
BpmI	CTGGAG	1 cut(s)	128
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	2 cut(s)	320, 567
BpuMI	CCSGG	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	51, 343, 356
BsaWI	WCCGGW	3 cut(s)	39, 101, 391
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 178
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	1 cut(s)	39
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	344
BseDI	CCNNGG	3 cut(s)	51, 343, 356
BseGI	GGATG	1 cut(s)	238
BseLI	CCNNNNNNNGG	2 cut(s)	87, 178
BseMII	CTCAG	2 cut(s)	399, 464
BseNI	ACTGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	358
Bsh1285I	CGRYCG	1 cut(s)	121
BshFI	GGCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	121
BsiSI	CCGG	5 cut(s)	40, 102, 112, 269, 392
BslFI	GGGAC	2 cut(s)	137, 392
BslI	CCNNNNNNNGG	2 cut(s)	87, 178
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	137, 392
BsnI	GGCC	1 cut(s)	116
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	118, 538, 571
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	5 cut(s)	29, 173, 322, 356, 358
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	400, 463
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	92
BspMAI	CTGCAG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	39
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	51, 343, 356
BssMI	GATC	3 cut(s)	118, 538, 571
BssSI	CACGAG	1 cut(s)	456
BssT1I	CCWWGG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	456
Bst2UI	CCWGG	1 cut(s)	344
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	2 cut(s)	408, 450
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	1 cut(s)	238
BstFNI	CGCG	1 cut(s)	358
BstKTI	GATC	3 cut(s)	121, 541, 574
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	3 cut(s)	118, 538, 571
BstMCI	CGRYCG	1 cut(s)	121
BstMWI	GCNNNNNNNGC	3 cut(s)	289, 298, 404
BstNI	CCWGG	1 cut(s)	344
BstSCI	CCNGG	2 cut(s)	111, 342
BstSFI	CTRYAG	1 cut(s)	299
BstUI	CGCG	1 cut(s)	358
BstV1I	GCAGC	1 cut(s)	285
BstV2I	GAAGAC	2 cut(s)	179, 371
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	238
CaiI	CAGNNNCTG	2 cut(s)	247, 283
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	6 cut(s)	37, 90, 109, 114, 163, 340
Cfr42I	CCGCGG	1 cut(s)	359
CseI	GACGC	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	67, 214
CspAI	ACCGGT	1 cut(s)	101
CviAII	CATG	4 cut(s)	375, 382, 511, 523
CviJI	RGCY	7 cut(s)	116, 148, 247, 283, 412, 436, 491
CviKI_1	RGCY	7 cut(s)	116, 148, 247, 283, 412, 436, 491
CviQI	GTAC	2 cut(s)	67, 214
DdeI	CTNAG	2 cut(s)	408, 450
DpnI	GATC	3 cut(s)	120, 540, 573
DpnII	GATC	3 cut(s)	118, 538, 571
Eco130I	CCWWGG	1 cut(s)	51
Eco47I	GGWCC	5 cut(s)	37, 90, 109, 163, 340
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	517
EcoRII	CCWGG	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	378, 385, 514, 526
FaiI	YATR	7 cut(s)	16, 128, 140, 376, 383, 512, 524
FaqI	GGGAC	2 cut(s)	137, 392
FatI	CATG	4 cut(s)	374, 381, 510, 522
FauI	CCCGC	2 cut(s)	180, 315
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	299, 356
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	299, 356
FspBI	CTAG	1 cut(s)	503
GluI	GCNGC	2 cut(s)	299, 356
GsuI	CTGGAG	1 cut(s)	128
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	5 cut(s)	40, 102, 112, 269, 392
HgaI	GACGC	1 cut(s)	298
Hin1II	CATG	4 cut(s)	378, 385, 514, 526
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	434
HinfI	GANTC	6 cut(s)	56, 158, 199, 238, 388, 446
HpaII	CCGG	5 cut(s)	40, 102, 112, 269, 392
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	2 cut(s)	214, 288
Hpy188I	TCNGA	5 cut(s)	134, 163, 192, 204, 243
Hpy188III	TCNNGA	6 cut(s)	107, 122, 254, 392, 503, 584
Hpy8I	GTNNAC	2 cut(s)	214, 288
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	4 cut(s)	301, 332, 531, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	289, 298, 404
HpyF3I	CTNAG	2 cut(s)	408, 450
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	4 cut(s)	378, 385, 514, 526
Kpn2I	TCCGGA	1 cut(s)	391
Ksp22I	TGATCA	1 cut(s)	571
KspI	CCGCGG	1 cut(s)	359
Kzo9I	GATC	3 cut(s)	118, 538, 571
LmnI	GCTCC	2 cut(s)	4, 147
Lsp1109I	GCAGC	1 cut(s)	285
LweI	GCATC	4 cut(s)	197, 319, 572, 577
MaeI	CTAG	1 cut(s)	503
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	2 cut(s)	20, 223
MalI	GATC	3 cut(s)	120, 540, 573
MboI	GATC	3 cut(s)	118, 538, 571
MboII	GAAGA	4 cut(s)	65, 179, 338, 376
MluCI	AATT	5 cut(s)	46, 272, 401, 485, 517
MlyI	GAGTC	2 cut(s)	50, 397
MnlI	CCTC	6 cut(s)	81, 176, 222, 253, 273, 388
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	5 cut(s)	40, 102, 112, 269, 392
MspR9I	CCNGG	2 cut(s)	113, 344
MvaI	CCWGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	358
MwoI	GCNNNNNNNGC	3 cut(s)	289, 298, 404
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	3 cut(s)	118, 538, 571
NlaIII	CATG	4 cut(s)	378, 385, 514, 526
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	20, 223
NsiI	ATGCAT	1 cut(s)	598
PfeI	GAWTC	4 cut(s)	158, 199, 238, 446
PinAI	ACCGGT	1 cut(s)	101
PkrI	GCNGC	2 cut(s)	300, 357
Ple19I	CGATCG	1 cut(s)	121
PleI	GAGTC	2 cut(s)	50, 396
PpsI	GAGTC	2 cut(s)	50, 396
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	342
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	6 cut(s)	37, 90, 109, 114, 163, 340
PspPPI	RGGWCCY	1 cut(s)	90
PstI	CTGCAG	1 cut(s)	303
PstNI	CAGNNNCTG	2 cut(s)	247, 283
PvuI	CGATCG	1 cut(s)	121
RsaI	GTAC	2 cut(s)	68, 215
RsaNI	GTAC	2 cut(s)	67, 214
SacII	CCGCGG	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	2 cut(s)	299, 356
Sau3AI	GATC	3 cut(s)	118, 538, 571
Sau96I	GGNCC	6 cut(s)	37, 90, 109, 114, 163, 340
SchI	GAGTC	2 cut(s)	50, 397
ScrFI	CCNGG	2 cut(s)	113, 344
SetI	ASST	6 cut(s)	150, 168, 249, 264, 438, 555
SfaNI	GCATC	4 cut(s)	197, 319, 572, 577
SfcI	CTRYAG	1 cut(s)	299
Sfr303I	CCGCGG	1 cut(s)	359
SgrBI	CCGCGG	1 cut(s)	359
SinI	GGWCC	5 cut(s)	37, 90, 109, 163, 340
SmlI	CTYRAG	2 cut(s)	335, 582
SmoI	CTYRAG	2 cut(s)	335, 582
Sse9I	AATT	5 cut(s)	46, 272, 401, 485, 517
SsiI	CCGC	5 cut(s)	29, 173, 322, 356, 358
SspMI	CTAG	1 cut(s)	503
StyD4I	CCNGG	2 cut(s)	111, 342
StyI	CCWWGG	1 cut(s)	51
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	46, 272, 401, 485, 517
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	4 cut(s)	158, 199, 238, 446
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	20, 223
TseI	GCWGC	1 cut(s)	298
Tsp45I	GTSAC	2 cut(s)	20, 223
VpaK11BI	GGWCC	5 cut(s)	37, 90, 109, 163, 340
XapI	RAATTY	3 cut(s)	46, 401, 517
XbaI	TCTAGA	1 cut(s)	502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XspI	CTAG	1 cut(s)	503
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.