Rh7BG234000
MYB Family

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Forward (+)
20445665 .. 20452423
6759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG234000.1

Sequence Viewer

Length: 1449 bp
ATGTATTTGACAATTTACTTCCAGCTTGGTGCAGTTGAGTTTCTGCGGAAACCTCTTTGTGAGGACAAACTTCGGAATATTTGGCAGCATGTTGTTCATAAGGCATTCAATGCAGGAGGGAAAACCGTCTCTGAATTAGTCAAGCCTGTCAAAGAATCTGTAGTACCCATGTTGCAGCCCAAACTGGAAAATGAACCACCGAAATGCAAAATCTCAGTAGTAACAGAAAATGCTTCAAGGGTTCTTGAACATGACCATGAACAATCCACCGGAAGTGATAAGTACCCAGCTCCTTCAACGCCACAGATAAAACAGGGATCTCGTTTACTGGATGATGGGGATTGCCAAGATCAAACTAACTGCTTATCAGAGAAAGAGAGTGGGGAGCACGATGGTGAATCTAAATCTGTCGAAACTACATGTGGCAATGCTAACGATACTCTTCAAATAAGTGAACCTCAGATGCCTGAGAAGATAGTGGTCAAACAGGAAAAGGACCCTGCTGATGTTTCTAAGAGTGATATTAATTTGTCTCAGCCTCATATTAGAGATGGTACCAATGATACTGGTCGTGCTACTGAAAATCTGAGTAAAGCATCAGGTCTCAATCATTCATACAAATCTGGTAGGAAGAAGATGAAGGTAGACTGGACACCAGAACTGCACAAGAAATTTGTCCATGCGGTGGAACAATTGGGTGTAGATCAAGCCATTCCTTCTCGAATACTAGAGCTTATGGAAACTGAAGGTTTGACAAGGCATAACGTAGCAAGCCATCTCCAGAAGTATCGGATGCACAAGAGACACATCTTGCCCAAGGATGAAGACCGCAGACTGTTACATCCTAGAGATCCAAATCAAATGAGTTATTATCCTCATAAACCCATCATGGCTTTTCCCCCATATCATTATAACAGTGCTGTATCAATGCCACCGGTCTATCCTATGTGGGGCCAACCTGCCAGCCACCCGGCCAATATCCAGATGTGGGGATCACCTAGCTATCCTCCATGGCAGGTTTCAGAAAGTTGGCATTGGAAGCCTTCTTATCCAGGGTTGCATGCTGATGCTTGGGGTTGCCCTGTAATGCCTCAACCTCTGCAAGGTGGTTATTCCTCTTATCCTCAAATTGCATCAGGGGTTCACAATACAAATGTAGTAGACAATGGCTGCAGCATGCCACATTACTCTTCGAAACATCATCCGATTGCATCAGGGTTGAACAACACAAATGTAGTAGATAATGGCTGCAGCATGCCACATGATTCTTCTGAACTTTATCCGGCAGAGGAAATCATTGACAAAGTTGTGAAGGAGGCAATGAGCAAGCCATGGCTACCCCTTCCTTTAGGCCTTAAGCTTCCTTCCACTGAAGGTGTACTAGCTGAACTCTCAAGGCAAGGCATCTGCAACATCCCTCCTCGGATGAACGGCTCTACCTCCCGTTGA

Protein Analysis

482

Amino Acids

53.9

Weight (kDa)

6.66

Isoelectric Point (pI)

56.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 214 - 264 2.3e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
Acc36I ACCTGC 2 cut(s) 967, 1006
Acc65I GGTACC 1 cut(s) 554
AccB1I GGYRCC 1 cut(s) 554
AccB7I CCANNNNNTGG 1 cut(s) 685
AccI GTMKAC 2 cut(s) 645, 1161
AciI CCGC 3 cut(s) 46, 683, 829
AclWI GGATC 3 cut(s) 325, 845, 1000
AcoI YGGCCR 1 cut(s) 972
AcsI RAATTY 1 cut(s) 671
AcuI CTGAAG 2 cut(s) 765, 1392
AfaI GTAC 4 cut(s) 165, 284, 556, 1380
AfiI CCNNNNNNNGG 4 cut(s) 685, 950, 988, 1103
AflII CTTAAG 1 cut(s) 1355
AflIII ACRYGT 1 cut(s) 419
AgeI ACCGGT 1 cut(s) 934
AgsI TTSAA 6 cut(s) 109, 237, 248, 297, 446, 1222
AjnI CCWGG 1 cut(s) 1051
AleI CACNNNNGTG 1 cut(s) 393
AluBI AGCT 6 cut(s) 25, 290, 733, 1002, 1360, 1385
AluI AGCT 6 cut(s) 25, 290, 733, 1002, 1360, 1385
Alw21I GWGCWC 1 cut(s) 390
Alw26I GTCTC 4 cut(s) 133, 537, 608, 796
AlwI GGATC 3 cut(s) 325, 845, 1000
AoxI GGCC 3 cut(s) 952, 972, 1351
ApeKI GCWGC 6 cut(s) 85, 175, 1170, 1173, 1248, 1251
ApoI RAATTY 1 cut(s) 671
AseI ATTAAT 1 cut(s) 525
AsiGI ACCGGT 1 cut(s) 934
Asp718I GGTACC 1 cut(s) 554
AspS9I GGNCC 2 cut(s) 496, 952
AsuC2I CCSGG 1 cut(s) 971
AsuHPI GGTGA 2 cut(s) 407, 987
AsuII TTCGAA 1 cut(s) 1193
AvaII GGWCC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 554
BbsI GAAGAC 1 cut(s) 831
Bbv12I GWGCWC 1 cut(s) 390
BbvI GCAGC 6 cut(s) 97, 187, 1157, 1185, 1235, 1263
BccI CCATC 5 cut(s) 329, 386, 545, 783, 893
BceAI ACGGC 1 cut(s) 1447
BciT130I CCWGG 1 cut(s) 1053
BcnI CCSGG 1 cut(s) 971
BcoDI GTCTC 4 cut(s) 133, 537, 608, 796
BfaI CTAG 4 cut(s) 728, 846, 999, 1382
BfmI CTRYAG 3 cut(s) 159, 1171, 1249
BfrI CTTAAG 1 cut(s) 1355
BfuAI ACCTGC 2 cut(s) 967, 1006
BisI GCNGC 6 cut(s) 86, 176, 1171, 1174, 1249, 1252
BlsI GCNGC 6 cut(s) 87, 177, 1172, 1175, 1250, 1253
Bme1390I CCNGG 2 cut(s) 971, 1053
Bme18I GGWCC 1 cut(s) 496
BmgT120I GGNCC 2 cut(s) 496, 952
BmiI GGNNCC 3 cut(s) 498, 556, 953
BmrFI CCNGG 2 cut(s) 971, 1053
BmsI GCATC 7 cut(s) 453, 605, 783, 1057, 1142, 1220, 1413
BpiI GAAGAC 1 cut(s) 831
BpmI CTGGAG 1 cut(s) 764
Bpu14I TTCGAA 1 cut(s) 1193
BpuEI CTTGAG 1 cut(s) 1378
BpuMI CCSGG 1 cut(s) 971
BsaBI GATNNNNATC 1 cut(s) 855
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 5 cut(s) 816, 1010, 1052, 1331, 1421
BsaWI WCCGGW 2 cut(s) 269, 934
Bsc4I CCNNNNNNNGG 4 cut(s) 685, 950, 988, 1103
Bse118I RCCGGY 1 cut(s) 934
Bse1I ACTGG 4 cut(s) 189, 333, 571, 653
Bse3DI GCAATG 2 cut(s) 433, 1326
Bse8I GATNNNNATC 1 cut(s) 855
BseBI CCWGG 1 cut(s) 1053
BseDI CCNNGG 5 cut(s) 816, 1010, 1052, 1331, 1421
BseGI GGATG 7 cut(s) 337, 798, 826, 841, 1201, 1413, 1431
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 4 cut(s) 685, 950, 988, 1103
BseMI GCAATG 2 cut(s) 433, 1326
BseMII CTCAG 5 cut(s) 228, 459, 473, 548, 578
BseNI ACTGG 4 cut(s) 189, 333, 571, 653
BseRI GAGGAG 1 cut(s) 1410
BseXI GCAGC 6 cut(s) 97, 187, 1157, 1185, 1235, 1263
BseYI CCCAGC 1 cut(s) 286
BsgI GTGCAG 2 cut(s) 51, 647
BshFI GGCC 3 cut(s) 954, 974, 1353
BshNI GGYRCC 1 cut(s) 554
BshTI ACCGGT 1 cut(s) 934
BsiHKAI GWGCWC 1 cut(s) 390
BsiSI CCGG 4 cut(s) 270, 935, 971, 1283
BslI CCNNNNNNNGG 4 cut(s) 685, 950, 988, 1103
BsmAI GTCTC 4 cut(s) 133, 537, 608, 796
BsmBI CGTCTC 1 cut(s) 133
BsmI GAATGC 1 cut(s) 104
BsnI GGCC 3 cut(s) 954, 974, 1353
Bso31I GGTCTC 1 cut(s) 608
Bsp119I TTCGAA 1 cut(s) 1193
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 5 cut(s) 317, 349, 703, 850, 992
Bsp19I CCATGG 2 cut(s) 1010, 1331
BspACI CCGC 3 cut(s) 46, 683, 829
BspANI GGCC 3 cut(s) 954, 974, 1353
BspCNI CTCAG 5 cut(s) 227, 460, 472, 547, 579
BspLI GGNNCC 3 cut(s) 498, 556, 953
BspMAI CTGCAG 2 cut(s) 1175, 1253
BspMI ACCTGC 2 cut(s) 967, 1006
BspPI GGATC 3 cut(s) 325, 845, 1000
BspT104I TTCGAA 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 554
BspTI CTTAAG 1 cut(s) 1355
BspTNI GGTCTC 1 cut(s) 608
BsrDI GCAATG 2 cut(s) 433, 1326
BsrFI RCCGGY 1 cut(s) 934
BsrI ACTGG 4 cut(s) 189, 333, 571, 653
BssAI RCCGGY 1 cut(s) 934
BssECI CCNNGG 5 cut(s) 816, 1010, 1052, 1331, 1421
BssMI GATC 5 cut(s) 317, 349, 703, 850, 992
BssT1I CCWWGG 3 cut(s) 816, 1010, 1331
Bst2UI CCWGG 1 cut(s) 1053
Bst4CI ACNGT 3 cut(s) 127, 837, 917
Bst6I CTCTTC 2 cut(s) 447, 1195
BstAFI CTTAAG 1 cut(s) 1355
BstAPI GCANNNNNTGC 1 cut(s) 110
BstBI TTCGAA 1 cut(s) 1193
BstC8I GCNNGC 6 cut(s) 772, 964, 1062, 1178, 1256, 1328
BstDEI CTNAG 6 cut(s) 214, 459, 468, 513, 534, 587
BstDSI CCRYGG 2 cut(s) 1010, 1331
BstENI CCTNNNNNAGG 1 cut(s) 1101
BstF5I GGATG 7 cut(s) 337, 798, 826, 841, 1201, 1413, 1431
BstKTI GATC 5 cut(s) 320, 352, 706, 853, 995
BstMAI GTCTC 4 cut(s) 133, 537, 608, 796
BstMBI GATC 5 cut(s) 317, 349, 703, 850, 992
BstMWI GCNNNNNNNGC 2 cut(s) 110, 1039
BstNI CCWGG 1 cut(s) 1053
BstNSI RCATGY 5 cut(s) 92, 423, 1064, 1180, 1258
BstSCI CCNGG 2 cut(s) 969, 1051
BstSFI CTRYAG 3 cut(s) 159, 1171, 1249
BstV1I GCAGC 6 cut(s) 97, 187, 1157, 1185, 1235, 1263
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 2 cut(s) 317, 850
BstYI RGATCY 2 cut(s) 317, 850
BsuRI GGCC 3 cut(s) 954, 974, 1353
BtgI CCRYGG 2 cut(s) 1010, 1331
BtsCI GGATG 7 cut(s) 337, 798, 826, 841, 1201, 1413, 1431
BtsIMutI CAGTG 2 cut(s) 922, 1368
BveI ACCTGC 2 cut(s) 967, 1006
Cac8I GCNNGC 6 cut(s) 772, 964, 1062, 1178, 1256, 1328
Cfr10I RCCGGY 1 cut(s) 934
Cfr13I GGNCC 2 cut(s) 496, 952
Csp6I GTAC 4 cut(s) 164, 283, 555, 1379
CspAI ACCGGT 1 cut(s) 934
CviQI GTAC 4 cut(s) 164, 283, 555, 1379
DdeI CTNAG 6 cut(s) 214, 459, 468, 513, 534, 587
DpnI GATC 5 cut(s) 319, 351, 705, 852, 994
DpnII GATC 5 cut(s) 317, 349, 703, 850, 992
EaeI YGGCCR 1 cut(s) 972
Eam1104I CTCTTC 2 cut(s) 447, 1195
EarI CTCTTC 2 cut(s) 447, 1195
Eco130I CCWWGG 3 cut(s) 816, 1010, 1331
Eco147I AGGCCT 1 cut(s) 1353
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 765, 1392
EcoNI CCTNNNNNAGG 1 cut(s) 1101
EcoO109I RGGNCCY 1 cut(s) 496
EcoRII CCWGG 1 cut(s) 1051
EcoT14I CCWWGG 3 cut(s) 816, 1010, 1331
ErhI CCWWGG 3 cut(s) 816, 1010, 1331
Esp3I CGTCTC 1 cut(s) 133
FblI GTMKAC 2 cut(s) 645, 1161
Fnu4HI GCNGC 6 cut(s) 86, 176, 1171, 1174, 1249, 1252
FokI GGATG 7 cut(s) 344, 805, 828, 833, 1188, 1400, 1438
Fsp4HI GCNGC 6 cut(s) 86, 176, 1171, 1174, 1249, 1252
FspBI CTAG 4 cut(s) 728, 846, 999, 1382
GluI GCNGC 6 cut(s) 86, 176, 1171, 1174, 1249, 1252
GsaI CCCAGC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 3 cut(s) 954, 974, 1353
HapII CCGG 4 cut(s) 270, 935, 971, 1283
HindIII AAGCTT 1 cut(s) 1358
HinfI GANTC 3 cut(s) 155, 398, 1265
HpaII CCGG 4 cut(s) 270, 935, 971, 1283
HphI GGTGA 2 cut(s) 407, 987
Hpy166II GTNNAC 6 cut(s) 326, 455, 646, 1144, 1162, 1379
Hpy188III TCNNGA 4 cut(s) 245, 720, 781, 982
Hpy8I GTNNAC 6 cut(s) 326, 455, 646, 1144, 1162, 1379
HpyAV CCTTC 9 cut(s) 303, 634, 726, 740, 1053, 1306, 1352, 1367, 1374
HpyCH4III ACNGT 3 cut(s) 127, 837, 917
HpyCH4IV ACGT 1 cut(s) 765
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 1039
HpyF3I CTNAG 6 cut(s) 214, 459, 468, 513, 534, 587
HpySE526I ACGT 1 cut(s) 765
KpnI GGTACC 1 cut(s) 558
Kzo9I GATC 5 cut(s) 317, 349, 703, 850, 992
LmnI GCTCC 2 cut(s) 295, 385
Lsp1109I GCAGC 6 cut(s) 97, 187, 1157, 1185, 1235, 1263
LweI GCATC 7 cut(s) 453, 605, 783, 1057, 1142, 1220, 1413
MaeI CTAG 4 cut(s) 728, 846, 999, 1382
MaeII ACGT 1 cut(s) 765
MaeIII GTNAC 2 cut(s) 220, 837
MalI GATC 5 cut(s) 319, 351, 705, 852, 994
MboI GATC 5 cut(s) 317, 349, 703, 850, 992
MboII GAAGA 7 cut(s) 434, 484, 643, 646, 836, 1182, 1260
MfeI CAATTG 1 cut(s) 692
MflI RGATCY 2 cut(s) 317, 850
MhlI GDGCHC 1 cut(s) 390
MluCI AATT 6 cut(s) 12, 134, 526, 671, 692, 1128
MseI TTAA 2 cut(s) 525, 1356
MslI CAYNNNNRTG 4 cut(s) 202, 255, 393, 1065
MspCI CTTAAG 1 cut(s) 1355
MspI CCGG 4 cut(s) 270, 935, 971, 1283
MspR9I CCNGG 2 cut(s) 971, 1053
MunI CAATTG 1 cut(s) 692
Mva1269I GAATGC 1 cut(s) 104
MvaI CCWGG 1 cut(s) 1053
MwoI GCNNNNNNNGC 2 cut(s) 110, 1039
NciI CCSGG 1 cut(s) 971
NcoI CCATGG 2 cut(s) 1010, 1331
NdeII GATC 5 cut(s) 317, 349, 703, 850, 992
NlaIV GGNNCC 3 cut(s) 498, 556, 953
NspI RCATGY 5 cut(s) 92, 423, 1064, 1180, 1258
NspV TTCGAA 1 cut(s) 1193
OliI CACNNNNGTG 1 cut(s) 393
PaeI GCATGC 3 cut(s) 1064, 1180, 1258
PceI AGGCCT 1 cut(s) 1353
PciI ACATGT 1 cut(s) 419
PctI GAATGC 1 cut(s) 104
PfeI GAWTC 3 cut(s) 155, 398, 1265
PflMI CCANNNNNTGG 1 cut(s) 685
PinAI ACCGGT 1 cut(s) 934
PkrI GCNGC 6 cut(s) 87, 177, 1172, 1175, 1250, 1253
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 525
PsiI TTATAA 1 cut(s) 912
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 1 cut(s) 1051
PspFI CCCAGC 1 cut(s) 286
PspGI CCWGG 1 cut(s) 1051
PspN4I GGNNCC 3 cut(s) 498, 556, 953
PspPI GGNCC 2 cut(s) 496, 952
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 2 cut(s) 1175, 1253
PsuI RGATCY 2 cut(s) 317, 850
RsaI GTAC 4 cut(s) 165, 284, 556, 1380
RsaNI GTAC 4 cut(s) 164, 283, 555, 1379
RseI CAYNNNNRTG 4 cut(s) 202, 255, 393, 1065
SaqAI TTAA 2 cut(s) 525, 1356
SatI GCNGC 6 cut(s) 86, 176, 1171, 1174, 1249, 1252
Sau3AI GATC 5 cut(s) 317, 349, 703, 850, 992
Sau96I GGNCC 2 cut(s) 496, 952
ScrFI CCNGG 2 cut(s) 971, 1053
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 7 cut(s) 453, 605, 783, 1057, 1142, 1220, 1413
SfcI CTRYAG 3 cut(s) 159, 1171, 1249
SfuI TTCGAA 1 cut(s) 1193
SinI GGWCC 1 cut(s) 496
SmiMI CAYNNNNRTG 4 cut(s) 202, 255, 393, 1065
SmlI CTYRAG 2 cut(s) 1355, 1393
SmoI CTYRAG 2 cut(s) 1355, 1393
SphI GCATGC 3 cut(s) 1064, 1180, 1258
Sse9I AATT 6 cut(s) 12, 134, 526, 671, 692, 1128
SseBI AGGCCT 1 cut(s) 1353
SsiI CCGC 3 cut(s) 46, 683, 829
SspI AATATT 1 cut(s) 79
SspMI CTAG 4 cut(s) 728, 846, 999, 1382
StuI AGGCCT 1 cut(s) 1353
StyD4I CCNGG 2 cut(s) 969, 1051
StyI CCWWGG 3 cut(s) 816, 1010, 1331
TaaI ACNGT 3 cut(s) 127, 837, 917
TaiI ACGT 1 cut(s) 768
TaqI TCGA 3 cut(s) 411, 721, 1193
TasI AATT 6 cut(s) 12, 134, 526, 671, 692, 1128
TatI WGTACW 1 cut(s) 1378
TfiI GAWTC 3 cut(s) 155, 398, 1265
Tru1I TTAA 2 cut(s) 525, 1356
Tru9I TTAA 2 cut(s) 525, 1356
TscAI CASTG 2 cut(s) 922, 1375
TseI GCWGC 6 cut(s) 85, 175, 1170, 1173, 1248, 1251
TspDTI ATGAA 7 cut(s) 86, 207, 273, 603, 653, 837, 1442
TspRI CASTG 2 cut(s) 922, 1375
Van91I CCANNNNNTGG 1 cut(s) 685
Vha464I CTTAAG 1 cut(s) 1355
VpaK11BI GGWCC 1 cut(s) 496
VspI ATTAAT 1 cut(s) 525
XagI CCTNNNNNAGG 1 cut(s) 1101
XapI RAATTY 1 cut(s) 671
XceI RCATGY 5 cut(s) 92, 423, 1064, 1180, 1258
XmiI GTMKAC 2 cut(s) 645, 1161
XspI CTAG 4 cut(s) 728, 846, 999, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.