Rw7G020320
MYB Family

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Forward (+)
22936091 .. 22942260
6170 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020320.1

Sequence Viewer

Length: 1464 bp
ATGGTTTGCACTGCCAGTGATTTGGAAGGGTGGAAAGATTTCCCAAAGGGCCTTAGAGTTCTTCTCCTTGATGAAGACACCAGTTCTTCTGCCGAGATAAGATCAAAGCTTGAGGCCATGGATTATATTGTTACTACATTCTGCAATGAAACCGAAGCATTGTCAGCATTTTCAAGCAACCCTGAAAGTTTCCATGTTTCAATTGTTGAGGTAAATACAAGCAAAGGTGATTGGGGTTTCCAATTTCTTGAAAAGGCCAAGGACTTGCCGATCATTATGACTTCAAATATTCATTGCCTGAACACCATGATGAAGTGTATAGCGCTTGGTGCAGTTGAGTTTCTGCGGAAACCTCTTGGTGAGGACAAACTTCGGAATATTTGGCAGCATGTTGTTCATAAGGCATTCAATGCAGGAGGGAAAACCGTCTCTGAATCAGTCAAGCCTGTCAAAGAATCTGTAGTACCCATGTTGCAGCCCAAACTGGAAAATGAACCACCGAAATGCAAAATCTCAGTAGTAACAGAAAACGCTTCAAGGGTTCTTGAACATGACCATGAACAATCCACTGGAAGTGATAAGTACCCAGCTCCTTCAACGCCACAAATAAAACAGGGATCTCGTTTACTGGATGATGGGGATTGCCAAGATCAAACTAACTGCTTATCAGAGAAAGAGAGTGGGGAGCACGATGATGAATCTAAATCTGTCGAAACTACATGTGGCAATGCTAACGATACTCTTCAAATAAGTGAACCTCAGATGCCTGAGAAGATAGTGGTCAAACAGGAAAAGGACTCCGCTGATGTTTCTAAGAGTGATATTAATTTGTCTCAGCCTCATATTATAGATGGTACCAATGATACTGGTCGTGCTACTGAAAATCTGAGTAAAGCATCAGGTCTCAATCATTCATACAAATCTGGTAGGAAGAAGATGAAGGTAGACTGGACACCAGAACTGCACAAGAAATTTGTCCATGCGGTGGAACAATTGGGTGTAGATCAAGCCATTCCTTCTCGAATACTAGAGCTTATGAAAACTGAAGGTTTGACAAGGCATAATGTAGCAAGCCATCTCCAGAAGTATCGGATGCACAAGAGACACATCTTGCCCAAGGATGAAGACCGCAGACTGTTACATCCTAGAGATCCAAATCAAATGAGTTATTATCCTCATAAACCCATCATGGCTTTTCCCCCATATCATTATAACAGTGCTGTATCAATGCCACCGGTCTATCCTATGTGGGGCCAACCTGCCAGCCACCCGGCCAATATCCAAATGTGGGGATCACCTAGCTATCCTCCATGGCAGGTGTCAGAAAGTTGGCATTGGAATCCTTCTTATCCAGGGTTGCATGCTGATGCTTGGGGTTGCCCTGTAATGCCTCAACCTCTGCAAGGTGGTTATTCCTCTTATCCTCAAGTGAGTATGCCGATGACAAATTGCATCGGGGGTTAA

Protein Analysis

487

Amino Acids

54.54

Weight (kDa)

6.09

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 20 - 126 2.2e-08 Response regulator receiver domain
Myb_DNA-binding PF00249 314 - 364 2.2e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1212
AarI CACCTGC 1 cut(s) 1306
Acc36I ACCTGC 2 cut(s) 1267, 1306
Acc65I GGTACC 1 cut(s) 854
AccB1I GGYRCC 1 cut(s) 854
AccB7I CCANNNNNTGG 1 cut(s) 985
AccI GTMKAC 1 cut(s) 945
AciI CCGC 4 cut(s) 346, 801, 983, 1129
AclWI GGATC 3 cut(s) 625, 1145, 1300
AcoI YGGCCR 1 cut(s) 1272
AcsI RAATTY 1 cut(s) 971
AcuI CTGAAG 1 cut(s) 1065
AfaI GTAC 3 cut(s) 465, 584, 856
AfeI AGCGCT 1 cut(s) 324
AfiI CCNNNNNNNGG 4 cut(s) 985, 1250, 1288, 1403
AflIII ACRYGT 1 cut(s) 719
AgeI ACCGGT 1 cut(s) 1234
AgsI TTSAA 9 cut(s) 174, 201, 251, 285, 409, 537, 548, 597, 746
AjnI CCWGG 1 cut(s) 1351
AluBI AGCT 4 cut(s) 109, 590, 1033, 1302
AluI AGCT 4 cut(s) 109, 590, 1033, 1302
Alw21I GWGCWC 1 cut(s) 690
Alw26I GTCTC 4 cut(s) 433, 837, 908, 1096
AlwI GGATC 3 cut(s) 625, 1145, 1300
Aor51HI AGCGCT 1 cut(s) 324
AoxI GGCC 5 cut(s) 49, 114, 255, 1252, 1272
ApeKI GCWGC 2 cut(s) 385, 475
ApoI RAATTY 1 cut(s) 971
AseI ATTAAT 1 cut(s) 825
AsiGI ACCGGT 1 cut(s) 1234
Asp700I GAANNNNTTC 1 cut(s) 38
Asp718I GGTACC 1 cut(s) 854
AspLEI GCGC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 49, 1252
AsuC2I CCSGG 1 cut(s) 1271
AsuHPI GGTGA 3 cut(s) 239, 371, 1287
BanI GGYRCC 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 81, 1131
Bbv12I GWGCWC 1 cut(s) 690
BbvI GCAGC 2 cut(s) 397, 487
BccI CCATC 4 cut(s) 629, 845, 1083, 1193
BciT130I CCWGG 1 cut(s) 1353
BcnI CCSGG 1 cut(s) 1271
BcoDI GTCTC 4 cut(s) 433, 837, 908, 1096
BfaI CTAG 3 cut(s) 1028, 1146, 1299
BfmI CTRYAG 1 cut(s) 459
BfoI RGCGCY 1 cut(s) 326
BfuAI ACCTGC 2 cut(s) 1267, 1306
BisI GCNGC 2 cut(s) 386, 476
BlsI GCNGC 2 cut(s) 387, 477
Bme1390I CCNGG 2 cut(s) 1271, 1353
BmgT120I GGNCC 2 cut(s) 49, 1252
BmiI GGNNCC 2 cut(s) 856, 1253
BmrFI CCNGG 2 cut(s) 1271, 1353
BmsI GCATC 4 cut(s) 753, 905, 1083, 1357
BpiI GAAGAC 2 cut(s) 81, 1131
BplI GAGNNNNNCTC 2 cut(s) 48, 80
BpmI CTGGAG 1 cut(s) 1064
BpuEI CTTGAG 2 cut(s) 131, 1410
BpuMI CCSGG 1 cut(s) 1271
BsaBI GATNNNNATC 1 cut(s) 1155
BsaI GGTCTC 1 cut(s) 908
BsaJI CCNNGG 5 cut(s) 117, 258, 1116, 1310, 1352
BsaWI WCCGGW 1 cut(s) 1234
Bsc4I CCNNNNNNNGG 4 cut(s) 985, 1250, 1288, 1403
Bse118I RCCGGY 1 cut(s) 1234
Bse1I ACTGG 7 cut(s) 15, 81, 489, 574, 633, 871, 953
Bse3DI GCAATG 3 cut(s) 151, 292, 733
Bse8I GATNNNNATC 1 cut(s) 1155
BseBI CCWGG 1 cut(s) 1353
BseDI CCNNGG 5 cut(s) 117, 258, 1116, 1310, 1352
BseGI GGATG 4 cut(s) 637, 1098, 1126, 1141
BseJI GATNNNNATC 1 cut(s) 1155
BseLI CCNNNNNNNGG 4 cut(s) 985, 1250, 1288, 1403
BseMI GCAATG 3 cut(s) 151, 292, 733
BseMII CTCAG 5 cut(s) 528, 759, 773, 848, 878
BseNI ACTGG 7 cut(s) 15, 81, 489, 574, 633, 871, 953
BseXI GCAGC 2 cut(s) 397, 487
BseYI CCCAGC 1 cut(s) 586
BsgI GTGCAG 2 cut(s) 351, 947
BshFI GGCC 5 cut(s) 51, 116, 257, 1254, 1274
BshNI GGYRCC 1 cut(s) 854
BshTI ACCGGT 1 cut(s) 1234
BsiHKAI GWGCWC 1 cut(s) 690
BsiSI CCGG 2 cut(s) 1235, 1271
BslI CCNNNNNNNGG 4 cut(s) 985, 1250, 1288, 1403
BsmAI GTCTC 4 cut(s) 433, 837, 908, 1096
BsmBI CGTCTC 1 cut(s) 433
BsmI GAATGC 1 cut(s) 404
BsnI GGCC 5 cut(s) 51, 116, 257, 1254, 1274
Bso31I GGTCTC 1 cut(s) 908
Bsp1286I GDGCHC 1 cut(s) 690
Bsp143I GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
Bsp19I CCATGG 2 cut(s) 117, 1310
BspACI CCGC 4 cut(s) 346, 801, 983, 1129
BspANI GGCC 5 cut(s) 51, 116, 257, 1254, 1274
BspCNI CTCAG 5 cut(s) 527, 760, 772, 847, 879
BspLI GGNNCC 2 cut(s) 856, 1253
BspMI ACCTGC 2 cut(s) 1267, 1306
BspPI GGATC 3 cut(s) 625, 1145, 1300
BspT107I GGYRCC 1 cut(s) 854
BspTNI GGTCTC 1 cut(s) 908
BsrDI GCAATG 3 cut(s) 151, 292, 733
BsrFI RCCGGY 1 cut(s) 1234
BsrI ACTGG 7 cut(s) 15, 81, 489, 574, 633, 871, 953
BssAI RCCGGY 1 cut(s) 1234
BssECI CCNNGG 5 cut(s) 117, 258, 1116, 1310, 1352
BssMI GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
BssT1I CCWWGG 4 cut(s) 117, 258, 1116, 1310
Bst2UI CCWGG 1 cut(s) 1353
Bst4CI ACNGT 3 cut(s) 427, 1137, 1217
Bst6I CTCTTC 1 cut(s) 747
BstAPI GCANNNNNTGC 1 cut(s) 410
BstC8I GCNNGC 3 cut(s) 1072, 1264, 1362
BstDEI CTNAG 7 cut(s) 53, 514, 759, 768, 813, 834, 887
BstDSI CCRYGG 2 cut(s) 117, 1310
BstENI CCTNNNNNAGG 1 cut(s) 1401
BstF5I GGATG 4 cut(s) 637, 1098, 1126, 1141
BstH2I RGCGCY 1 cut(s) 326
BstHHI GCGC 1 cut(s) 325
BstKTI GATC 7 cut(s) 104, 273, 620, 652, 1006, 1153, 1295
BstMAI GTCTC 4 cut(s) 433, 837, 908, 1096
BstMBI GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
BstMWI GCNNNNNNNGC 3 cut(s) 164, 329, 410
BstNI CCWGG 1 cut(s) 1353
BstNSI RCATGY 3 cut(s) 392, 723, 1364
BstSCI CCNGG 2 cut(s) 1269, 1351
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 2 cut(s) 397, 487
BstV2I GAAGAC 2 cut(s) 81, 1131
BstX2I RGATCY 2 cut(s) 617, 1150
BstXI CCANNNNNNTGG 1 cut(s) 22
BstYI RGATCY 2 cut(s) 617, 1150
BsuRI GGCC 5 cut(s) 51, 116, 257, 1254, 1274
BtgI CCRYGG 2 cut(s) 117, 1310
BtsCI GGATG 4 cut(s) 637, 1098, 1126, 1141
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 4 cut(s) 9, 22, 567, 1222
BveI ACCTGC 2 cut(s) 1267, 1306
Cac8I GCNNGC 3 cut(s) 1072, 1264, 1362
CfoI GCGC 1 cut(s) 325
Cfr10I RCCGGY 1 cut(s) 1234
Cfr13I GGNCC 2 cut(s) 49, 1252
Csp6I GTAC 3 cut(s) 464, 583, 855
CspAI ACCGGT 1 cut(s) 1234
CviQI GTAC 3 cut(s) 464, 583, 855
DdeI CTNAG 7 cut(s) 53, 514, 759, 768, 813, 834, 887
DpnI GATC 7 cut(s) 103, 272, 619, 651, 1005, 1152, 1294
DpnII GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
EaeI YGGCCR 1 cut(s) 1272
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco130I CCWWGG 4 cut(s) 117, 258, 1116, 1310
Eco31I GGTCTC 1 cut(s) 908
Eco47III AGCGCT 1 cut(s) 324
Eco57I CTGAAG 1 cut(s) 1065
EcoNI CCTNNNNNAGG 1 cut(s) 1401
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 1351
EcoT14I CCWWGG 4 cut(s) 117, 258, 1116, 1310
ErhI CCWWGG 4 cut(s) 117, 258, 1116, 1310
Esp3I CGTCTC 1 cut(s) 433
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 2 cut(s) 386, 476
FokI GGATG 4 cut(s) 644, 1105, 1128, 1133
Fsp4HI GCNGC 2 cut(s) 386, 476
FspBI CTAG 3 cut(s) 1028, 1146, 1299
GlaI GCGC 1 cut(s) 324
GluI GCNGC 2 cut(s) 386, 476
GsaI CCCAGC 1 cut(s) 590
GsuI CTGGAG 1 cut(s) 1064
HaeII RGCGCY 1 cut(s) 326
HaeIII GGCC 5 cut(s) 51, 116, 257, 1254, 1274
HapII CCGG 2 cut(s) 1235, 1271
HhaI GCGC 1 cut(s) 325
Hin6I GCGC 1 cut(s) 323
HinP1I GCGC 1 cut(s) 323
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 5 cut(s) 434, 455, 698, 797, 1339
HpaII CCGG 2 cut(s) 1235, 1271
HphI GGTGA 3 cut(s) 239, 371, 1287
Hpy166II GTNNAC 3 cut(s) 626, 755, 946
Hpy188I TCNGA 7 cut(s) 375, 433, 670, 762, 888, 1092, 1324
Hpy188III TCNNGA 4 cut(s) 248, 545, 1020, 1081
Hpy8I GTNNAC 3 cut(s) 626, 755, 946
HpyAV CCTTC 6 cut(s) 20, 603, 934, 1026, 1040, 1353
HpyCH4III ACNGT 3 cut(s) 427, 1137, 1217
HpyF10VI GCNNNNNNNGC 3 cut(s) 164, 329, 410
HpyF3I CTNAG 7 cut(s) 53, 514, 759, 768, 813, 834, 887
HspAI GCGC 1 cut(s) 323
KpnI GGTACC 1 cut(s) 858
Kzo9I GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
LmnI GCTCC 2 cut(s) 595, 685
Lsp1109I GCAGC 2 cut(s) 397, 487
LweI GCATC 4 cut(s) 753, 905, 1083, 1357
MaeI CTAG 3 cut(s) 1028, 1146, 1299
MaeIII GTNAC 3 cut(s) 130, 520, 1137
MalI GATC 7 cut(s) 103, 272, 619, 651, 1005, 1152, 1294
MboI GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
MboII GAAGA 8 cut(s) 53, 78, 86, 734, 784, 943, 946, 1136
MfeI CAATTG 2 cut(s) 201, 992
MflI RGATCY 2 cut(s) 617, 1150
MhlI GDGCHC 1 cut(s) 690
MluCI AATT 6 cut(s) 201, 242, 826, 971, 992, 1447
MlyI GAGTC 1 cut(s) 791
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 825, 1462
MslI CAYNNNNRTG 5 cut(s) 308, 502, 555, 693, 1365
MspA1I CMGCKG 1 cut(s) 803
MspI CCGG 2 cut(s) 1235, 1271
MspR9I CCNGG 2 cut(s) 1271, 1353
MunI CAATTG 2 cut(s) 201, 992
Mva1269I GAATGC 1 cut(s) 404
MvaI CCWGG 1 cut(s) 1353
MwoI GCNNNNNNNGC 3 cut(s) 164, 329, 410
NciI CCSGG 1 cut(s) 1271
NcoI CCATGG 2 cut(s) 117, 1310
NdeII GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
NlaIV GGNNCC 2 cut(s) 856, 1253
NmeAIII GCCGAG 1 cut(s) 118
NspI RCATGY 3 cut(s) 392, 723, 1364
PaeI GCATGC 1 cut(s) 1364
PaqCI CACCTGC 1 cut(s) 1306
PciI ACATGT 1 cut(s) 719
PctI GAATGC 1 cut(s) 404
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 4 cut(s) 434, 455, 698, 1339
PflMI CCANNNNNTGG 1 cut(s) 985
PinAI ACCGGT 1 cut(s) 1234
PkrI GCNGC 2 cut(s) 387, 477
PleI GAGTC 1 cut(s) 791
PpsI GAGTC 1 cut(s) 791
PscI ACATGT 1 cut(s) 719
PshBI ATTAAT 1 cut(s) 825
PsiI TTATAA 1 cut(s) 1212
Psp6I CCWGG 1 cut(s) 1351
PspFI CCCAGC 1 cut(s) 586
PspGI CCWGG 1 cut(s) 1351
PspN4I GGNNCC 2 cut(s) 856, 1253
PspPI GGNCC 2 cut(s) 49, 1252
PsuI RGATCY 2 cut(s) 617, 1150
RsaI GTAC 3 cut(s) 465, 584, 856
RsaNI GTAC 3 cut(s) 464, 583, 855
RseI CAYNNNNRTG 5 cut(s) 308, 502, 555, 693, 1365
SaqAI TTAA 2 cut(s) 825, 1462
SatI GCNGC 2 cut(s) 386, 476
Sau3AI GATC 7 cut(s) 101, 270, 617, 649, 1003, 1150, 1292
Sau96I GGNCC 2 cut(s) 49, 1252
SchI GAGTC 1 cut(s) 791
ScrFI CCNGG 2 cut(s) 1271, 1353
SduI GDGCHC 1 cut(s) 690
SfaNI GCATC 4 cut(s) 753, 905, 1083, 1357
SfcI CTRYAG 1 cut(s) 459
SmiMI CAYNNNNRTG 5 cut(s) 308, 502, 555, 693, 1365
SmlI CTYRAG 2 cut(s) 110, 1425
SmoI CTYRAG 2 cut(s) 110, 1425
SphI GCATGC 1 cut(s) 1364
Sse9I AATT 6 cut(s) 201, 242, 826, 971, 992, 1447
SsiI CCGC 4 cut(s) 346, 801, 983, 1129
SspI AATATT 2 cut(s) 289, 379
SspMI CTAG 3 cut(s) 1028, 1146, 1299
StyD4I CCNGG 2 cut(s) 1269, 1351
StyI CCWWGG 4 cut(s) 117, 258, 1116, 1310
TaaI ACNGT 3 cut(s) 427, 1137, 1217
TaqI TCGA 2 cut(s) 711, 1021
TasI AATT 6 cut(s) 201, 242, 826, 971, 992, 1447
TfiI GAWTC 4 cut(s) 434, 455, 698, 1339
Tru1I TTAA 2 cut(s) 825, 1462
Tru9I TTAA 2 cut(s) 825, 1462
TscAI CASTG 4 cut(s) 16, 22, 574, 1222
TseI GCWGC 2 cut(s) 385, 475
TspRI CASTG 4 cut(s) 16, 22, 574, 1222
Van91I CCANNNNNTGG 1 cut(s) 985
VspI ATTAAT 1 cut(s) 825
XagI CCTNNNNNAGG 1 cut(s) 1401
XapI RAATTY 1 cut(s) 971
XceI RCATGY 3 cut(s) 392, 723, 1364
XmiI GTMKAC 1 cut(s) 945
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 1028, 1146, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.