Rh7AG238600
MYB Family

Two-component response regulator-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
23314535 .. 23321795
7261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG238600.1

Sequence Viewer

Length: 1584 bp
ATGACTTCAAACATTCATTGCCTGAACACCATGATGAAGTGTATAGCGCTTGGTGCAGTTGAGTTTCTGCGGAAACCTCTTTGTGAGGACAAACTTCGGAATATTTGGCAGCATGTTGTTCATAAGGCATTCAATGCAGGAGGGAAAACCGTCTCTGAATCAGTCAAGCCTGTCAAAGAATCTGTAGTACCCATGTTGCAGCCCAAACTGGAAAATGAACCACCGAAATGCAAAATCTCAGTAGTAACAGAAAACGCTTCAAGGGTTCTTGAACATGACCATGAACAATCCACTGGAAGTGATAAGTACCCAGCTCCTTCAACGCCACAAATAAAACAGGGATCTCGTTTAATGGATGATGGGGATTGCCAAGATCAAACTAACTGCTTATCAGAGAAAGAGAGTGGGGAGCACGATGGTGAATCTAAATCTGTCGAAACTACATGTGGCAATGCTAACGATACTCTTCAAATAAGTGAACCTCAGATGCCTGAGAAGATAGTGGTCAAACAGGAAAAGGACTCTGCTGATGTTTCTAAGAGTGATATTAATTTGTCTCAGCCTCATATTATAGATGGTACCAATGATACTGGTCGTGCTACTGAAAATCTGAGTAAAGCATCAGGTCTCAATCATTCATACAAATCTGGTAGGAAGAAGATGAAGGTAGACTGGACACCAGAACTGCACAAGAAATTTGTCCATGCGGTGGAACAATTGGGTGTAGATCAAGCCATTCCTTCTCGAATACTAGAGCTTATGAAAACTGAAGGTTTGACAAGGCATAATGTAGCAAGCCATCTCCAGAAGTATCGGATGCACAAGAGACACATCTTGCCCAAGGATGAAGACCGCAGACTGTTACATCCTAGAGATCCAAATCAAATGAGTTATTATCCTCATAAACCCATCATGGCTTTTCCCCCATATCATTATAACAGTGCTGTATCAATGCCACCGGTCTATCCTATGTGGGGCCAACCTGCCAGCCACCCGGCCAATATCCAAATGTGGGGATCACCTAGCTATCCTCCATGGCAGGTGTCAGAAAGTTGGCATTGGAATCCTTCTTATCCAGGGTTGCATGCTGATGCTTGGGGTTGCCCTGTAATGCCTCAACCTCTGCAAGGTGGTTATTCCTCTTATCCTCAAATTGCATCAGGGGTTAACAATACAAATGTAGTAGACAATGGCTGCAGCATGCCACATAACTCTTCGAAACATCATCCGGTACTACCACACAGCCTTAGTTTATGCACATTGCTCAAAATCTGGACACTGCATTCCATTTCTGATGTGCAATTAAGCTACAAATATATACCTTGTAACCAATATTGCAAATCGCTCCTTGACTTGAACAATCATTTATCCTATTGTTTCATACTCATTGTTTCTCTAATGCAGATTGCATCAGGGTTGAACAACACAAATGTAGTAGATAATGGCTGCAGCATGCCACATGATTCTTCTGAACTTTATCCGGTAATACCACACACCCTTAACGTATGCATATTGCTAAAAAATTTGGTCATTGCATTCCATTTCTATTATGTAGTCAAACCATCATTGCAATCTGATCCTTGA

Protein Analysis

527

Amino Acids

59.11

Weight (kDa)

6.99

Isoelectric Point (pI)

51.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 222 - 272 2.4e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AarI CACCTGC 1 cut(s) 1030
Acc36I ACCTGC 2 cut(s) 991, 1030
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccB7I CCANNNNNTGG 1 cut(s) 709
AccI GTMKAC 2 cut(s) 669, 1185
AciI CCGC 3 cut(s) 70, 707, 853
AclWI GGATC 4 cut(s) 349, 869, 1024, 1571
AcoI YGGCCR 1 cut(s) 996
AcsI RAATTY 2 cut(s) 695, 1522
AcuI CTGAAG 1 cut(s) 789
AfaI GTAC 4 cut(s) 189, 308, 580, 1233
AfeI AGCGCT 1 cut(s) 48
AfiI CCNNNNNNNGG 4 cut(s) 709, 974, 1012, 1127
AflIII ACRYGT 1 cut(s) 443
AgeI ACCGGT 1 cut(s) 958
AgsI TTSAA 8 cut(s) 9, 133, 261, 272, 321, 470, 1357, 1420
AjnI CCWGG 1 cut(s) 1075
AleI CACNNNNGTG 1 cut(s) 417
AluBI AGCT 4 cut(s) 314, 757, 1026, 1308
AluI AGCT 4 cut(s) 314, 757, 1026, 1308
Alw21I GWGCWC 1 cut(s) 414
Alw26I GTCTC 4 cut(s) 157, 561, 632, 820
AlwI GGATC 4 cut(s) 349, 869, 1024, 1571
Aor51HI AGCGCT 1 cut(s) 48
AoxI GGCC 2 cut(s) 976, 996
ApeKI GCWGC 6 cut(s) 109, 199, 1194, 1197, 1446, 1449
ApoI RAATTY 2 cut(s) 695, 1522
AseI ATTAAT 1 cut(s) 549
AsiGI ACCGGT 1 cut(s) 958
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 1 cut(s) 976
AsuC2I CCSGG 1 cut(s) 995
AsuHPI GGTGA 2 cut(s) 431, 1011
AsuII TTCGAA 1 cut(s) 1217
BanI GGYRCC 1 cut(s) 578
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 1 cut(s) 414
BbvI GCAGC 6 cut(s) 121, 211, 1181, 1209, 1433, 1461
BccI CCATC 6 cut(s) 353, 410, 569, 807, 917, 1570
BciT130I CCWGG 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 995
BcoDI GTCTC 4 cut(s) 157, 561, 632, 820
BfaI CTAG 3 cut(s) 752, 870, 1023
BfmI CTRYAG 3 cut(s) 183, 1195, 1447
BfoI RGCGCY 1 cut(s) 50
BfuAI ACCTGC 2 cut(s) 991, 1030
BisI GCNGC 6 cut(s) 110, 200, 1195, 1198, 1447, 1450
BlsI GCNGC 6 cut(s) 111, 201, 1196, 1199, 1448, 1451
Bme1390I CCNGG 2 cut(s) 995, 1077
BmgT120I GGNCC 1 cut(s) 976
BmiI GGNNCC 2 cut(s) 580, 977
BmrFI CCNGG 2 cut(s) 995, 1077
BmsI GCATC 6 cut(s) 477, 629, 807, 1081, 1166, 1418
BpiI GAAGAC 1 cut(s) 855
BpmI CTGGAG 1 cut(s) 788
Bpu14I TTCGAA 1 cut(s) 1217
BpuMI CCSGG 1 cut(s) 995
BsaBI GATNNNNATC 1 cut(s) 879
BsaI GGTCTC 1 cut(s) 632
BsaJI CCNNGG 3 cut(s) 840, 1034, 1076
BsaWI WCCGGW 3 cut(s) 958, 1228, 1480
Bsc4I CCNNNNNNNGG 4 cut(s) 709, 974, 1012, 1127
Bse118I RCCGGY 1 cut(s) 958
Bse1I ACTGG 4 cut(s) 213, 298, 595, 677
Bse3DI GCAATG 5 cut(s) 16, 457, 1259, 1530, 1565
Bse8I GATNNNNATC 1 cut(s) 879
BseBI CCWGG 1 cut(s) 1077
BseDI CCNNGG 3 cut(s) 840, 1034, 1076
BseGI GGATG 5 cut(s) 361, 822, 850, 865, 1225
BseJI GATNNNNATC 1 cut(s) 879
BseLI CCNNNNNNNGG 4 cut(s) 709, 974, 1012, 1127
BseMI GCAATG 5 cut(s) 16, 457, 1259, 1530, 1565
BseMII CTCAG 5 cut(s) 252, 483, 497, 572, 602
BseNI ACTGG 4 cut(s) 213, 298, 595, 677
BseXI GCAGC 6 cut(s) 121, 211, 1181, 1209, 1433, 1461
BseYI CCCAGC 1 cut(s) 310
BsgI GTGCAG 2 cut(s) 75, 671
BshFI GGCC 2 cut(s) 978, 998
BshNI GGYRCC 1 cut(s) 578
BshTI ACCGGT 1 cut(s) 958
BsiHKAI GWGCWC 1 cut(s) 414
BsiSI CCGG 4 cut(s) 959, 995, 1229, 1481
BslI CCNNNNNNNGG 4 cut(s) 709, 974, 1012, 1127
BsmAI GTCTC 4 cut(s) 157, 561, 632, 820
BsmBI CGTCTC 1 cut(s) 157
BsmI GAATGC 3 cut(s) 128, 1282, 1535
BsnI GGCC 2 cut(s) 978, 998
Bso31I GGTCTC 1 cut(s) 632
Bsp119I TTCGAA 1 cut(s) 1217
Bsp1286I GDGCHC 1 cut(s) 414
Bsp143I GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
Bsp19I CCATGG 1 cut(s) 1034
BspACI CCGC 3 cut(s) 70, 707, 853
BspANI GGCC 2 cut(s) 978, 998
BspCNI CTCAG 5 cut(s) 251, 484, 496, 571, 603
BspLI GGNNCC 2 cut(s) 580, 977
BspMAI CTGCAG 2 cut(s) 1199, 1451
BspMI ACCTGC 2 cut(s) 991, 1030
BspPI GGATC 4 cut(s) 349, 869, 1024, 1571
BspT104I TTCGAA 1 cut(s) 1217
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 632
BsrDI GCAATG 5 cut(s) 16, 457, 1259, 1530, 1565
BsrFI RCCGGY 1 cut(s) 958
BsrI ACTGG 4 cut(s) 213, 298, 595, 677
BssAI RCCGGY 1 cut(s) 958
BssECI CCNNGG 3 cut(s) 840, 1034, 1076
BssMI GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
BssT1I CCWWGG 2 cut(s) 840, 1034
Bst2UI CCWGG 1 cut(s) 1077
Bst4CI ACNGT 3 cut(s) 151, 861, 941
Bst6I CTCTTC 2 cut(s) 471, 1219
BstAPI GCANNNNNTGC 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 1217
BstC8I GCNNGC 5 cut(s) 796, 988, 1086, 1202, 1454
BstDEI CTNAG 7 cut(s) 238, 483, 492, 537, 558, 611, 1247
BstDSI CCRYGG 1 cut(s) 1034
BstENI CCTNNNNNAGG 1 cut(s) 1125
BstF5I GGATG 5 cut(s) 361, 822, 850, 865, 1225
BstH2I RGCGCY 1 cut(s) 50
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 6 cut(s) 344, 376, 730, 877, 1019, 1579
BstMAI GTCTC 4 cut(s) 157, 561, 632, 820
BstMBI GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
BstMWI GCNNNNNNNGC 2 cut(s) 53, 134
BstNI CCWGG 1 cut(s) 1077
BstNSI RCATGY 5 cut(s) 116, 447, 1088, 1204, 1456
BstSCI CCNGG 2 cut(s) 993, 1075
BstSFI CTRYAG 3 cut(s) 183, 1195, 1447
BstV1I GCAGC 6 cut(s) 121, 211, 1181, 1209, 1433, 1461
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 2 cut(s) 341, 874
BstYI RGATCY 2 cut(s) 341, 874
BsuRI GGCC 2 cut(s) 978, 998
BtgI CCRYGG 1 cut(s) 1034
BtsCI GGATG 5 cut(s) 361, 822, 850, 865, 1225
BtsI GCAGTG 1 cut(s) 1277
BtsIMutI CAGTG 3 cut(s) 291, 946, 1277
BveI ACCTGC 2 cut(s) 991, 1030
Cac8I GCNNGC 5 cut(s) 796, 988, 1086, 1202, 1454
CfoI GCGC 1 cut(s) 49
Cfr10I RCCGGY 1 cut(s) 958
Cfr13I GGNCC 1 cut(s) 976
Csp6I GTAC 4 cut(s) 188, 307, 579, 1232
CspAI ACCGGT 1 cut(s) 958
CviQI GTAC 4 cut(s) 188, 307, 579, 1232
DdeI CTNAG 7 cut(s) 238, 483, 492, 537, 558, 611, 1247
DpnI GATC 6 cut(s) 343, 375, 729, 876, 1018, 1578
DpnII GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
EaeI YGGCCR 1 cut(s) 996
Eam1104I CTCTTC 2 cut(s) 471, 1219
EarI CTCTTC 2 cut(s) 471, 1219
Eco130I CCWWGG 2 cut(s) 840, 1034
Eco31I GGTCTC 1 cut(s) 632
Eco47III AGCGCT 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 1125
EcoRII CCWGG 1 cut(s) 1075
EcoT14I CCWWGG 2 cut(s) 840, 1034
EcoT22I ATGCAT 1 cut(s) 1511
ErhI CCWWGG 2 cut(s) 840, 1034
Esp3I CGTCTC 1 cut(s) 157
FblI GTMKAC 2 cut(s) 669, 1185
Fnu4HI GCNGC 6 cut(s) 110, 200, 1195, 1198, 1447, 1450
FokI GGATG 5 cut(s) 368, 829, 852, 857, 1212
Fsp4HI GCNGC 6 cut(s) 110, 200, 1195, 1198, 1447, 1450
FspBI CTAG 3 cut(s) 752, 870, 1023
GlaI GCGC 1 cut(s) 48
GluI GCNGC 6 cut(s) 110, 200, 1195, 1198, 1447, 1450
GsaI CCCAGC 1 cut(s) 314
GsuI CTGGAG 1 cut(s) 788
HaeII RGCGCY 1 cut(s) 50
HaeIII GGCC 2 cut(s) 978, 998
HapII CCGG 4 cut(s) 959, 995, 1229, 1481
HhaI GCGC 1 cut(s) 49
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HincII GTYRAC 1 cut(s) 1168
HindII GTYRAC 1 cut(s) 1168
HinfI GANTC 6 cut(s) 158, 179, 422, 521, 1063, 1463
HpaI GTTAAC 1 cut(s) 1168
HpaII CCGG 4 cut(s) 959, 995, 1229, 1481
HphI GGTGA 2 cut(s) 431, 1011
Hpy166II GTNNAC 4 cut(s) 479, 670, 1168, 1186
Hpy188III TCNNGA 4 cut(s) 269, 744, 805, 1273
Hpy8I GTNNAC 4 cut(s) 479, 670, 1168, 1186
HpyAV CCTTC 5 cut(s) 327, 658, 750, 764, 1077
HpyCH4III ACNGT 3 cut(s) 151, 861, 941
HpyCH4IV ACGT 1 cut(s) 1503
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 134
HpyF3I CTNAG 7 cut(s) 238, 483, 492, 537, 558, 611, 1247
HpySE526I ACGT 1 cut(s) 1503
HspAI GCGC 1 cut(s) 47
KpnI GGTACC 1 cut(s) 582
KspAI GTTAAC 1 cut(s) 1168
Kzo9I GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
LmnI GCTCC 3 cut(s) 319, 409, 1350
Lsp1109I GCAGC 6 cut(s) 121, 211, 1181, 1209, 1433, 1461
LweI GCATC 6 cut(s) 477, 629, 807, 1081, 1166, 1418
MaeI CTAG 3 cut(s) 752, 870, 1023
MaeII ACGT 1 cut(s) 1503
MaeIII GTNAC 3 cut(s) 244, 861, 1325
MalI GATC 6 cut(s) 343, 375, 729, 876, 1018, 1578
MboI GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
MboII GAAGA 7 cut(s) 458, 508, 667, 670, 860, 1206, 1458
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 2 cut(s) 341, 874
MhlI GDGCHC 1 cut(s) 414
MluCI AATT 6 cut(s) 550, 695, 716, 1152, 1301, 1522
MlyI GAGTC 1 cut(s) 515
Mph1103I ATGCAT 1 cut(s) 1511
MseI TTAA 5 cut(s) 350, 549, 1167, 1304, 1500
MslI CAYNNNNRTG 5 cut(s) 32, 226, 279, 417, 1089
MspI CCGG 4 cut(s) 959, 995, 1229, 1481
MspR9I CCNGG 2 cut(s) 995, 1077
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 3 cut(s) 128, 1282, 1535
MvaI CCWGG 1 cut(s) 1077
MwoI GCNNNNNNNGC 2 cut(s) 53, 134
NciI CCSGG 1 cut(s) 995
NcoI CCATGG 1 cut(s) 1034
NdeII GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
NlaIV GGNNCC 2 cut(s) 580, 977
NsiI ATGCAT 1 cut(s) 1511
NspI RCATGY 5 cut(s) 116, 447, 1088, 1204, 1456
NspV TTCGAA 1 cut(s) 1217
OliI CACNNNNGTG 1 cut(s) 417
PaeI GCATGC 3 cut(s) 1088, 1204, 1456
PaqCI CACCTGC 1 cut(s) 1030
PciI ACATGT 1 cut(s) 443
PctI GAATGC 3 cut(s) 128, 1282, 1535
PfeI GAWTC 5 cut(s) 158, 179, 422, 1063, 1463
PflMI CCANNNNNTGG 1 cut(s) 709
PinAI ACCGGT 1 cut(s) 958
PkrI GCNGC 6 cut(s) 111, 201, 1196, 1199, 1448, 1451
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
PscI ACATGT 1 cut(s) 443
PshBI ATTAAT 1 cut(s) 549
PsiI TTATAA 1 cut(s) 936
Psp6I CCWGG 1 cut(s) 1075
PspFI CCCAGC 1 cut(s) 310
PspGI CCWGG 1 cut(s) 1075
PspN4I GGNNCC 2 cut(s) 580, 977
PspPI GGNCC 1 cut(s) 976
PstI CTGCAG 2 cut(s) 1199, 1451
PsuI RGATCY 2 cut(s) 341, 874
RsaI GTAC 4 cut(s) 189, 308, 580, 1233
RsaNI GTAC 4 cut(s) 188, 307, 579, 1232
RseI CAYNNNNRTG 5 cut(s) 32, 226, 279, 417, 1089
SaqAI TTAA 5 cut(s) 350, 549, 1167, 1304, 1500
SatI GCNGC 6 cut(s) 110, 200, 1195, 1198, 1447, 1450
Sau3AI GATC 6 cut(s) 341, 373, 727, 874, 1016, 1576
Sau96I GGNCC 1 cut(s) 976
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 995, 1077
SduI GDGCHC 1 cut(s) 414
SfaNI GCATC 6 cut(s) 477, 629, 807, 1081, 1166, 1418
SfcI CTRYAG 3 cut(s) 183, 1195, 1447
SfuI TTCGAA 1 cut(s) 1217
SmiMI CAYNNNNRTG 5 cut(s) 32, 226, 279, 417, 1089
SphI GCATGC 3 cut(s) 1088, 1204, 1456
Sse9I AATT 6 cut(s) 550, 695, 716, 1152, 1301, 1522
SsiI CCGC 3 cut(s) 70, 707, 853
SspI AATATT 2 cut(s) 103, 1334
SspMI CTAG 3 cut(s) 752, 870, 1023
StyD4I CCNGG 2 cut(s) 993, 1075
StyI CCWWGG 2 cut(s) 840, 1034
TaaI ACNGT 3 cut(s) 151, 861, 941
TaiI ACGT 1 cut(s) 1506
TaqI TCGA 3 cut(s) 435, 745, 1217
TasI AATT 6 cut(s) 550, 695, 716, 1152, 1301, 1522
TfiI GAWTC 5 cut(s) 158, 179, 422, 1063, 1463
Tru1I TTAA 5 cut(s) 350, 549, 1167, 1304, 1500
Tru9I TTAA 5 cut(s) 350, 549, 1167, 1304, 1500
TscAI CASTG 3 cut(s) 298, 946, 1284
TseI GCWGC 6 cut(s) 109, 199, 1194, 1197, 1446, 1449
TspRI CASTG 3 cut(s) 298, 946, 1284
Van91I CCANNNNNTGG 1 cut(s) 709
VspI ATTAAT 1 cut(s) 549
XagI CCTNNNNNAGG 1 cut(s) 1125
XapI RAATTY 2 cut(s) 695, 1522
XceI RCATGY 5 cut(s) 116, 447, 1088, 1204, 1456
XmiI GTMKAC 2 cut(s) 669, 1185
XspI CTAG 3 cut(s) 752, 870, 1023
Zsp2I ATGCAT 1 cut(s) 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.