FvH4_5g22960

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008138
Physical Location & Seq
Reverse (-)
14279706 .. 14281267
1562 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g22960.t1

Sequence Viewer

Length: 1365 bp
ATGAATAAAATGCCACATAAAAGACATGTTGCAGTTCTTGCATTTCCGTTTGGCTGCCATGCAAAGCCTGTGCTTAACTTGGTGCGCAAGCTTGCAAAAGCTTCCCCAAACACACACTTTTCTTTCTTCAACACATCGAAATCCAACAACTCGCTGTTCTCAGAATCAAAATCCGAGATTTTGGATAACATCAAACCCTACAATATATCAGATGGTGTTCCAACAGATCATGCCTTACCAAGAAACCCGCTAGAGGCAGTGGACCTTTTCCTCAAGGCAGCGCCTGAAAACTTCAAAACCTGCATTGAAAAGGCAGTGGCAGACACAAACATGCAGATCAGTTGTCTAATAACAGATGGATTCTTGGTCTTTGGTAGCCAGATGGCTGAGAATTTGGGTGTTCCATGGATTCCAGTTTGGATTCCCTTACCTTGCACCCTGTCTGCTCACATTTACACTGACGCTATCCGCCATATATATGCAATTGATGTTGTTGATCGTCAAGACAAGACACTAGAAACCATTCCGGGTTTGTCTACAATGCGCATCGAGGACTTACCAGATGAAGTACTTCCAAGTGAATCTCTATTCTCTGAAACACTCAGACGAATTGGGCAAGTCCTCCCAAAGTCTGCAGCCGTTGTCATGAATTTCTATCAAGAACTAGACCCCATGTTTCTTGAAAATGATCTCAAGTCCAAGTTGCCCAAGATGCTCAATGTTGGTTTTCTCACCCTTTCGTTACCGCTACAGCCATTACCTCCATCAGAAACCGATGCCTCGGGATGCCTTTCGTGGTTGGATGCGCAACGAGCTTCGTCTGTGGTGTATATTAGTTTCGGAACTGTGGGAGCTCCATCTAGGAGTGAGCTTGTAGCTCTGGCTGAGGCACTGAAAGCAACTGGTGCACCATTTCTTTGGTCTCTTGGAGACAGATTTAAGGACGCACTGCCGTCTGGTTTTGTTGAAAGAACACAGAAGCATGGGAAAGTTGTGTCATGGGCACCCCAGGCGCAAGTTTTAGGGCATAGCTCAATAGGTGTGTTTGTGACTCACTGCGGGTGCAATTCTGTTTATGAAAGTGTTTCCAATGGAGTCCCGATGATATGCAGGCCATTGTTTGGAGATCACAAAATGACTGCGAGGATGGTCGAGGAAGTGTGGGGTGTTGGAGTCAAAGTGGAGGGCGGGGTGTTCACAAAGAGTGGAGTGATCAAGAGCTTCGAGCGGATTTTGGAAAATGAAGAAGGGAAGAAAATGAGGGAGAAGGCCAGAGCCCTCAGAGAGATTGTAGAAGAGGCTGCTGGGCCTTCTGGGAGTGCTCCACCAGACTATACAGCTTTGCTGGATGTAATATCCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

455

Amino Acids

49.74

Weight (kDa)

6.15

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 110 - 419 1.8e-34 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 3 cut(s) 86, 545, 807
Acc36I ACCTGC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 1003
AccB7I CCANNNNNTGG 1 cut(s) 1121
AccBSI CCGCTC 1 cut(s) 1228
AccI GTMKAC 1 cut(s) 536
AciI CCGC 6 cut(s) 248, 469, 746, 1059, 1188, 1228
AcsI RAATTY 2 cut(s) 391, 649
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 2 cut(s) 253, 1121
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 5 cut(s) 130, 295, 308, 683, 968
AjnI CCWGG 1 cut(s) 1008
AluBI AGCT 9 cut(s) 91, 101, 815, 854, 871, 878, 1032, 1221, 1340
AluI AGCT 9 cut(s) 91, 101, 815, 854, 871, 878, 1032, 1221, 1340
Alw21I GWGCWC 3 cut(s) 856, 910, 1324
Alw26I GTCTC 2 cut(s) 924, 927
Alw44I GTGCAC 1 cut(s) 906
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 1 cut(s) 781
AoxI GGCC 3 cut(s) 1112, 1269, 1307
ApaLI GTGCAC 1 cut(s) 906
ApeKI GCWGC 4 cut(s) 54, 278, 635, 1301
ApoI RAATTY 2 cut(s) 391, 649
Asp700I GAANNNNTTC 2 cut(s) 522, 570
AspLEI GCGC 5 cut(s) 87, 283, 546, 808, 1015
AspS9I GGNCC 2 cut(s) 262, 1307
AsuC2I CCSGG 1 cut(s) 528
AsuHPI GGTGA 1 cut(s) 724
AvaI CYCGRG 1 cut(s) 781
AvaII GGWCC 1 cut(s) 262
BaeGI GKGCMC 2 cut(s) 910, 1006
BanI GGYRCC 1 cut(s) 1003
BanII GRGCYC 2 cut(s) 856, 1279
Bbv12I GWGCWC 3 cut(s) 856, 910, 1324
BbvCI CCTCAGC 1 cut(s) 885
BbvI GCAGC 4 cut(s) 41, 290, 647, 1288
BccI CCATC 6 cut(s) 206, 350, 376, 772, 865, 1141
BceAI ACGGC 2 cut(s) 623, 937
BciT130I CCWGG 1 cut(s) 1010
BclI TGATCA 1 cut(s) 1212
BcnI CCSGG 1 cut(s) 528
BcoDI GTCTC 2 cut(s) 924, 927
BfaI CTAG 5 cut(s) 251, 515, 665, 861, 1363
BfmI CTRYAG 2 cut(s) 633, 749
BfoI RGCGCY 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 308
BisI GCNGC 4 cut(s) 55, 279, 636, 1302
BlsI GCNGC 4 cut(s) 56, 280, 637, 1303
BmcAI AGTACT 1 cut(s) 570
Bme1390I CCNGG 2 cut(s) 528, 1010
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 781
BmgT120I GGNCC 2 cut(s) 262, 1307
BmiI GGNNCC 1 cut(s) 1005
BmrFI CCNGG 2 cut(s) 528, 1010
BmsI GCATC 5 cut(s) 555, 702, 766, 776, 793
Bpu10I CCTNAGC 1 cut(s) 885
BpuEI CTTGAG 2 cut(s) 257, 677
BpuMI CCSGG 1 cut(s) 528
BsaI GGTCTC 1 cut(s) 927
BsaJI CCNNGG 3 cut(s) 404, 780, 1008
BsaXI ACNNNNNCTCC 2 cut(s) 1164, 1194
Bsc4I CCNNNNNNNGG 2 cut(s) 253, 1121
Bse1I ACTGG 2 cut(s) 413, 907
BseBI CCWGG 1 cut(s) 1010
BseDI CCNNGG 3 cut(s) 404, 780, 1008
BseGI GGATG 4 cut(s) 791, 808, 1152, 1354
BseLI CCNNNNNNNGG 2 cut(s) 253, 1121
BseMII CTCAG 5 cut(s) 174, 378, 616, 876, 1294
BseNI ACTGG 2 cut(s) 413, 907
BseSI GKGCMC 2 cut(s) 910, 1006
BseXI GCAGC 4 cut(s) 41, 290, 647, 1288
BseYI CCCAGC 1 cut(s) 1304
BshFI GGCC 3 cut(s) 1114, 1271, 1309
BshNI GGYRCC 1 cut(s) 1003
BsiHKAI GWGCWC 3 cut(s) 856, 910, 1324
BsiHKCI CYCGRG 1 cut(s) 781
BsiSI CCGG 1 cut(s) 527
BslFI GGGAC 1 cut(s) 1082
BslI CCNNNNNNNGG 2 cut(s) 253, 1121
BsmAI GTCTC 2 cut(s) 924, 927
BsmFI GGGAC 1 cut(s) 1082
BsnI GGCC 3 cut(s) 1114, 1271, 1309
Bso31I GGTCTC 1 cut(s) 927
BsoBI CYCGRG 1 cut(s) 781
Bsp1286I GDGCHC 5 cut(s) 856, 910, 1006, 1279, 1324
Bsp143I GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
Bsp19I CCATGG 1 cut(s) 404
BspACI CCGC 6 cut(s) 248, 469, 746, 1059, 1188, 1228
BspANI GGCC 3 cut(s) 1114, 1271, 1309
BspCNI CTCAG 5 cut(s) 173, 379, 615, 877, 1293
BspHI TCATGA 1 cut(s) 645
BspLI GGNNCC 1 cut(s) 1005
BspMAI CTGCAG 1 cut(s) 637
BspMI ACCTGC 1 cut(s) 308
BspT107I GGYRCC 1 cut(s) 1003
BspTNI GGTCTC 1 cut(s) 927
BsrBI CCGCTC 1 cut(s) 1228
BsrI ACTGG 2 cut(s) 413, 907
BssECI CCNNGG 3 cut(s) 404, 780, 1008
BssMI GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 1 cut(s) 1010
Bst4CI ACNGT 1 cut(s) 847
Bst6I CTCTTC 1 cut(s) 1290
BstAPI GCANNNNNTGC 2 cut(s) 38, 905
BstC8I GCNNGC 3 cut(s) 89, 93, 1112
BstDEI CTNAG 5 cut(s) 160, 387, 602, 885, 1280
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 4 cut(s) 791, 808, 1152, 1354
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 5 cut(s) 87, 283, 546, 808, 1015
BstKTI GATC 6 cut(s) 229, 339, 499, 691, 1129, 1215
BstMAI GTCTC 2 cut(s) 924, 927
BstMBI GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
BstMWI GCNNNNNNNGC 6 cut(s) 38, 712, 812, 896, 905, 1010
BstNI CCWGG 1 cut(s) 1010
BstNSI RCATGY 2 cut(s) 29, 334
BstSCI CCNGG 2 cut(s) 526, 1008
BstSFI CTRYAG 2 cut(s) 633, 749
BstSLI GKGCMC 2 cut(s) 910, 1006
BstV1I GCAGC 4 cut(s) 41, 290, 647, 1288
BstXI CCANNNNNNTGG 1 cut(s) 918
BsuRI GGCC 3 cut(s) 1114, 1271, 1309
BtgI CCRYGG 1 cut(s) 404
BtsCI GGATG 4 cut(s) 791, 808, 1152, 1354
BtsI GCAGTG 4 cut(s) 264, 321, 947, 1054
BtsIMutI CAGTG 6 cut(s) 264, 321, 456, 890, 947, 1054
BveI ACCTGC 1 cut(s) 308
Cac8I GCNNGC 3 cut(s) 89, 93, 1112
CaiI CAGNNNCTG 1 cut(s) 284
CciI TCATGA 1 cut(s) 645
CfoI GCGC 5 cut(s) 87, 283, 546, 808, 1015
Cfr13I GGNCC 2 cut(s) 262, 1307
CseI GACGC 2 cut(s) 470, 953
Csp6I GTAC 1 cut(s) 569
CviAII CATG 9 cut(s) 26, 59, 230, 331, 405, 646, 673, 983, 999
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 5 cut(s) 160, 387, 602, 885, 1280
DpnI GATC 6 cut(s) 228, 338, 498, 690, 1128, 1214
DpnII GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
Eam1104I CTCTTC 1 cut(s) 1290
EarI CTCTTC 1 cut(s) 1290
EciI GGCGGA 1 cut(s) 458
Ecl136II GAGCTC 1 cut(s) 854
Eco130I CCWWGG 1 cut(s) 404
Eco24I GRGCYC 2 cut(s) 856, 1279
Eco31I GGTCTC 1 cut(s) 927
Eco47I GGWCC 1 cut(s) 262
Eco53kI GAGCTC 1 cut(s) 854
Eco88I CYCGRG 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 854
EcoRII CCWGG 1 cut(s) 1008
EcoT14I CCWWGG 1 cut(s) 404
EcoT38I GRGCYC 2 cut(s) 856, 1279
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 9 cut(s) 29, 62, 233, 334, 408, 649, 676, 986, 1002
FaqI GGGAC 1 cut(s) 1082
FatI CATG 9 cut(s) 25, 58, 229, 330, 404, 645, 672, 982, 998
FauI CCCGC 3 cut(s) 255, 1052, 1181
FbaI TGATCA 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 4 cut(s) 55, 279, 636, 1302
FokI GGATG 4 cut(s) 798, 815, 1159, 1361
FriOI GRGCYC 2 cut(s) 856, 1279
Fsp4HI GCNGC 4 cut(s) 55, 279, 636, 1302
FspAI RTGCGCAY 1 cut(s) 545
FspBI CTAG 5 cut(s) 251, 515, 665, 861, 1363
FspI TGCGCA 3 cut(s) 86, 545, 807
GlaI GCGC 5 cut(s) 86, 282, 545, 807, 1014
GluI GCNGC 4 cut(s) 55, 279, 636, 1302
GsaI CCCAGC 1 cut(s) 1308
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 3 cut(s) 1114, 1271, 1309
HapII CCGG 1 cut(s) 527
HgaI GACGC 2 cut(s) 470, 953
HhaI GCGC 5 cut(s) 87, 283, 546, 808, 1015
Hin1II CATG 9 cut(s) 29, 62, 233, 334, 408, 649, 676, 986, 1002
Hin6I GCGC 5 cut(s) 85, 281, 544, 806, 1013
HinP1I GCGC 5 cut(s) 85, 281, 544, 806, 1013
HindIII AAGCTT 2 cut(s) 89, 99
HinfI GANTC 8 cut(s) 164, 360, 409, 421, 581, 1051, 1095, 1173
HpaII CCGG 1 cut(s) 527
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 4 cut(s) 262, 537, 908, 1197
Hpy188I TCNGA 8 cut(s) 163, 175, 211, 595, 605, 769, 842, 1283
Hpy188III TCNNGA 7 cut(s) 503, 646, 659, 680, 783, 1099, 1216
Hpy8I GTNNAC 4 cut(s) 262, 537, 908, 1197
HpyAV CCTTC 3 cut(s) 1241, 1261, 1320
HpyCH4III ACNGT 1 cut(s) 847
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 712, 812, 896, 905, 1010
HpyF3I CTNAG 5 cut(s) 160, 387, 602, 885, 1280
Hsp92II CATG 9 cut(s) 29, 62, 233, 334, 408, 649, 676, 986, 1002
HspAI GCGC 5 cut(s) 85, 281, 544, 806, 1013
Ksp22I TGATCA 1 cut(s) 1212
Kzo9I GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
LmnI GCTCC 3 cut(s) 851, 859, 1327
Lsp1109I GCAGC 4 cut(s) 41, 290, 647, 1288
LweI GCATC 5 cut(s) 555, 702, 766, 776, 793
MaeI CTAG 5 cut(s) 251, 515, 665, 861, 1363
MaeIII GTNAC 2 cut(s) 741, 1048
MalI GATC 6 cut(s) 228, 338, 498, 690, 1128, 1214
MbiI CCGCTC 1 cut(s) 1228
MboI GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
MboII GAAGA 4 cut(s) 118, 1256, 1264, 1307
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 5 cut(s) 856, 910, 1006, 1279, 1324
MluCI AATT 5 cut(s) 391, 483, 609, 649, 1066
MlyI GAGTC 3 cut(s) 1045, 1104, 1182
MmeI TCCRAC 4 cut(s) 168, 245, 780, 1150
MroXI GAANNNNTTC 2 cut(s) 522, 570
MseI TTAA 2 cut(s) 75, 939
MslI CAYNNNNRTG 2 cut(s) 329, 477
MspI CCGG 1 cut(s) 527
MspR9I CCNGG 2 cut(s) 528, 1010
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 1010
MwoI GCNNNNNNNGC 6 cut(s) 38, 712, 812, 896, 905, 1010
NciI CCSGG 1 cut(s) 528
NcoI CCATGG 1 cut(s) 404
NdeII GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
NlaIII CATG 9 cut(s) 29, 62, 233, 334, 408, 649, 676, 986, 1002
NlaIV GGNNCC 1 cut(s) 1005
NmuCI GTSAC 1 cut(s) 1048
NsbI TGCGCA 3 cut(s) 86, 545, 807
NspI RCATGY 2 cut(s) 29, 334
PagI TCATGA 1 cut(s) 645
PciI ACATGT 1 cut(s) 25
PdmI GAANNNNTTC 2 cut(s) 522, 570
PfeI GAWTC 5 cut(s) 164, 360, 409, 421, 581
PflMI CCANNNNNTGG 1 cut(s) 1121
PkrI GCNGC 4 cut(s) 56, 280, 637, 1303
PleI GAGTC 3 cut(s) 1045, 1103, 1181
PpsI GAGTC 3 cut(s) 1045, 1103, 1181
PscI ACATGT 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 1008
PspFI CCCAGC 1 cut(s) 1304
PspGI CCWGG 1 cut(s) 1008
PspN4I GGNNCC 1 cut(s) 1005
PspPI GGNCC 2 cut(s) 262, 1307
PstI CTGCAG 1 cut(s) 637
PstNI CAGNNNCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
RseI CAYNNNNRTG 2 cut(s) 329, 477
SacI GAGCTC 1 cut(s) 856
SaqAI TTAA 2 cut(s) 75, 939
SatI GCNGC 4 cut(s) 55, 279, 636, 1302
Sau3AI GATC 6 cut(s) 226, 336, 496, 688, 1126, 1212
Sau96I GGNCC 2 cut(s) 262, 1307
ScaI AGTACT 1 cut(s) 570
SchI GAGTC 3 cut(s) 1045, 1104, 1182
ScrFI CCNGG 2 cut(s) 528, 1010
SduI GDGCHC 5 cut(s) 856, 910, 1006, 1279, 1324
SfaNI GCATC 5 cut(s) 555, 702, 766, 776, 793
SfcI CTRYAG 2 cut(s) 633, 749
SinI GGWCC 1 cut(s) 262
SmiMI CAYNNNNRTG 2 cut(s) 329, 477
SmlI CTYRAG 2 cut(s) 272, 692
SmoI CTYRAG 2 cut(s) 272, 692
Sse9I AATT 5 cut(s) 391, 483, 609, 649, 1066
SsiI CCGC 6 cut(s) 248, 469, 746, 1059, 1188, 1228
SspMI CTAG 5 cut(s) 251, 515, 665, 861, 1363
SstI GAGCTC 1 cut(s) 856
StyD4I CCNGG 2 cut(s) 526, 1008
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 847
TaqI TCGA 4 cut(s) 137, 549, 1152, 1224
TasI AATT 5 cut(s) 391, 483, 609, 649, 1066
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 5 cut(s) 164, 360, 409, 421, 581
Tru1I TTAA 2 cut(s) 75, 939
Tru9I TTAA 2 cut(s) 75, 939
TscAI CASTG 6 cut(s) 264, 321, 463, 897, 954, 1061
TseFI GTSAC 1 cut(s) 1048
TseI GCWGC 4 cut(s) 54, 278, 635, 1301
Tsp45I GTSAC 1 cut(s) 1048
TspDTI ATGAA 5 cut(s) 17, 579, 662, 1092, 1257
TspGWI ACGGA 1 cut(s) 36
TspRI CASTG 6 cut(s) 264, 321, 463, 897, 954, 1061
Van91I CCANNNNNTGG 1 cut(s) 1121
VneI GTGCAC 1 cut(s) 906
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 2 cut(s) 391, 649
XceI RCATGY 2 cut(s) 29, 334
XmiI GTMKAC 1 cut(s) 536
XmnI GAANNNNTTC 2 cut(s) 522, 570
XspI CTAG 5 cut(s) 251, 515, 665, 861, 1363
ZrmI AGTACT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.