RLG00000002983

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008138
Physical Location & Seq
Forward (+)
42638444 .. 42639491
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002983

Sequence Viewer

Length: 741 bp
ATGCGCATCGAGGACTTACCAGAAGAAGTACTTCCCAGTGAATCTCTATTCTCGCACACGCTAAGACGAATTGGACTAGTCCTATCACAGTCCACAGCCGTTGTCATGAATTTCTATCAAGAACTAAACCCCACGCTCCTTGAAAATGATCTCAAATCCAAGTTGCCCAAGTTGCTCAATCAACGAGCTTCGTCTGTGGTGTATATCAGTTTCGGAACTGTGGGAGCTCCATCTAGGAGTGAGCTTGTAGCTCTGGCTGAGGCACTGGAAGCGATTGATGCACCATTTCTTTGGTCTCTTAGAAACAATTTTAAAGACTTATTGCCGTCTGGTTTTGTTGTAGGGGCAAACAAGCATAGGAAAGTTGTGTCATGGGCACCTCAGACGCAAGTGTTAGGACATAGCTCAATAGCTGTGTTTGTGACTCACTGCGGGTGCAATTCTGTGTATGAAAGCATTTCTAATGGGGTCCCAATGATCTGCAGGCCATTGTTTGGAGATCACAGAATGACTGCGCGGATGGTTGAGGAACTGTGGGGTGTTGGAGTAAAGGTGGAGGGCGGAGAATTCACAAAGAGTGGAGTGATCAAGAGCTTCGAGCGGATTTTCAAAAATGAAGAAGGGAAGAAGATGAGGGAGAAGGCCAGAGCCCTTAAAGAGATTGTAGGAGTGGCTGCTGGGCCTTCTAGGAGCGCTCTACAAGATTTTCGAACTTTGGTGGATGTAATTTCTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

247

Amino Acids

27.19

Weight (kDa)

8.76

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 63 - 209 6.3e-34 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 494
AccBSI CCGCTC 1 cut(s) 601
AccII CGCG 1 cut(s) 517
AciI CCGC 4 cut(s) 432, 517, 561, 601
AcsI RAATTY 2 cut(s) 109, 566
AfaI GTAC 1 cut(s) 30
AfeI AGCGCT 1 cut(s) 694
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 2 cut(s) 143, 610
AhlI ACTAGT 1 cut(s) 76
AluBI AGCT 7 cut(s) 188, 227, 244, 251, 405, 413, 594
AluI AGCT 7 cut(s) 188, 227, 244, 251, 405, 413, 594
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 300
Aor51HI AGCGCT 1 cut(s) 694
AoxI GGCC 3 cut(s) 485, 642, 680
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 2 cut(s) 109, 566
Asp700I GAANNNNTTC 1 cut(s) 30
AspLEI GCGC 3 cut(s) 6, 517, 695
AspS9I GGNCC 2 cut(s) 469, 680
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 376
BanII GRGCYC 2 cut(s) 229, 652
Bbv12I GWGCWC 1 cut(s) 229
BbvCI CCTCAGC 1 cut(s) 258
BbvI GCAGC 1 cut(s) 661
BccI CCATC 2 cut(s) 238, 514
BceAI ACGGC 2 cut(s) 83, 310
BclI TGATCA 1 cut(s) 585
BcoDI GTCTC 1 cut(s) 300
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 3 cut(s) 77, 234, 687
BfmI CTRYAG 1 cut(s) 481
BfoI RGCGCY 1 cut(s) 696
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
BmcAI AGTACT 1 cut(s) 30
Bme18I GGWCC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 469, 680
BmiI GGNNCC 3 cut(s) 378, 470, 471
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 15, 268
BmuI ACTGGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 709
BsaI GGTCTC 1 cut(s) 300
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 1 cut(s) 494
Bse1I ACTGG 2 cut(s) 36, 270
BseGI GGATG 2 cut(s) 525, 727
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 2 cut(s) 249, 395
BseNI ACTGG 2 cut(s) 36, 270
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 1 cut(s) 661
BseYI CCCAGC 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 517
BshFI GGCC 3 cut(s) 487, 644, 682
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 229
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 3 cut(s) 487, 644, 682
Bso31I GGTCTC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 709
Bsp1286I GDGCHC 3 cut(s) 229, 379, 652
Bsp143I GATC 4 cut(s) 148, 477, 499, 585
BspACI CCGC 4 cut(s) 432, 517, 561, 601
BspANI GGCC 3 cut(s) 487, 644, 682
BspCNI CTCAG 2 cut(s) 250, 394
BspFNI CGCG 1 cut(s) 517
BspHI TCATGA 1 cut(s) 105
BspLI GGNNCC 3 cut(s) 378, 470, 471
BspMAI CTGCAG 1 cut(s) 485
BspT104I TTCGAA 1 cut(s) 709
BspT107I GGYRCC 1 cut(s) 376
BspTNI GGTCTC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 601
BsrI ACTGG 2 cut(s) 36, 270
BssMI GATC 4 cut(s) 148, 477, 499, 585
Bst4CI ACNGT 3 cut(s) 90, 220, 534
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 4 cut(s) 62, 258, 299, 381
BstF5I GGATG 2 cut(s) 525, 727
BstFNI CGCG 1 cut(s) 517
BstH2I RGCGCY 1 cut(s) 696
BstHHI GCGC 3 cut(s) 6, 517, 695
BstKTI GATC 4 cut(s) 151, 480, 502, 588
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 4 cut(s) 148, 477, 499, 585
BstMWI GCNNNNNNNGC 3 cut(s) 172, 269, 278
BstSFI CTRYAG 1 cut(s) 481
BstSLI GKGCMC 1 cut(s) 379
BstUI CGCG 1 cut(s) 517
BstV1I GCAGC 1 cut(s) 661
BstXI CCANNNNNNTGG 1 cut(s) 291
BsuRI GGCC 3 cut(s) 487, 644, 682
BtsCI GGATG 2 cut(s) 525, 727
BtsI GCAGTG 1 cut(s) 427
BtsIMutI CAGTG 3 cut(s) 43, 263, 427
Cac8I GCNNGC 1 cut(s) 485
CciI TCATGA 1 cut(s) 105
CfoI GCGC 3 cut(s) 6, 517, 695
Cfr13I GGNCC 2 cut(s) 469, 680
CseI GACGC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 29
CspCI CAANNNNNGTGG 4 cut(s) 82, 117, 121, 156
CviAII CATG 2 cut(s) 106, 372
CviQI GTAC 1 cut(s) 29
DdeI CTNAG 4 cut(s) 62, 258, 299, 381
DpnI GATC 4 cut(s) 150, 479, 501, 587
DpnII GATC 4 cut(s) 148, 477, 499, 585
DraI TTTAAA 1 cut(s) 313
EciI GGCGGA 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 227
Eco24I GRGCYC 2 cut(s) 229, 652
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 469
Eco47III AGCGCT 1 cut(s) 694
Eco53kI GAGCTC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 566
EcoT38I GRGCYC 2 cut(s) 229, 652
FaeI CATG 2 cut(s) 109, 375
FaiI YATR 6 cut(s) 107, 204, 357, 373, 402, 450
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 455
FatI CATG 2 cut(s) 105, 371
FauI CCCGC 1 cut(s) 425
FbaI TGATCA 1 cut(s) 585
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 2 cut(s) 532, 734
FriOI GRGCYC 2 cut(s) 229, 652
Fsp4HI GCNGC 1 cut(s) 675
FspAI RTGCGCAY 1 cut(s) 5
FspBI CTAG 3 cut(s) 77, 234, 687
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 3 cut(s) 5, 516, 694
GluI GCNGC 1 cut(s) 675
GsaI CCCAGC 1 cut(s) 681
HaeII RGCGCY 1 cut(s) 696
HaeIII GGCC 3 cut(s) 487, 644, 682
HgaI GACGC 1 cut(s) 394
HhaI GCGC 3 cut(s) 6, 517, 695
Hin1II CATG 2 cut(s) 109, 375
Hin6I GCGC 3 cut(s) 4, 515, 693
HinP1I GCGC 3 cut(s) 4, 515, 693
HinfI GANTC 2 cut(s) 41, 424
Hpy166II GTNNAC 1 cut(s) 93
Hpy188I TCNGA 2 cut(s) 215, 384
Hpy188III TCNNGA 3 cut(s) 106, 119, 589
Hpy8I GTNNAC 1 cut(s) 93
HpyAV CCTTC 3 cut(s) 614, 634, 693
HpyCH4III ACNGT 3 cut(s) 90, 220, 534
HpyCH4V TGCA 3 cut(s) 281, 438, 483
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 269, 278
HpyF3I CTNAG 4 cut(s) 62, 258, 299, 381
Hsp92II CATG 2 cut(s) 109, 375
HspAI GCGC 3 cut(s) 4, 515, 693
KflI GGGWCCC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 585
Kzo9I GATC 4 cut(s) 148, 477, 499, 585
LmnI GCTCC 4 cut(s) 141, 224, 232, 690
LpnPI CCDG 8 cut(s) 33, 49, 239, 251, 315, 469, 658, 663
Lsp1109I GCAGC 1 cut(s) 661
LweI GCATC 2 cut(s) 15, 268
MaeI CTAG 3 cut(s) 77, 234, 687
MaeIII GTNAC 1 cut(s) 421
MalI GATC 4 cut(s) 150, 479, 501, 587
MbiI CCGCTC 1 cut(s) 601
MboI GATC 4 cut(s) 148, 477, 499, 585
MboII GAAGA 4 cut(s) 35, 629, 637, 640
MhlI GDGCHC 3 cut(s) 229, 379, 652
MluCI AATT 6 cut(s) 69, 109, 307, 439, 566, 726
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 6 cut(s) 4, 253, 390, 520, 550, 627
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 312, 654, 739
MvnI CGCG 1 cut(s) 517
MwoI GCNNNNNNNGC 3 cut(s) 172, 269, 278
NdeII GATC 4 cut(s) 148, 477, 499, 585
NlaIII CATG 2 cut(s) 109, 375
NlaIV GGNNCC 3 cut(s) 378, 470, 471
NmuCI GTSAC 1 cut(s) 421
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 709
PagI TCATGA 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 30
PfeI GAWTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 1 cut(s) 676
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
PpuMI RGGWCCY 1 cut(s) 469
Psp124BI GAGCTC 1 cut(s) 229
Psp5II RGGWCCY 1 cut(s) 469
PspFI CCCAGC 1 cut(s) 677
PspN4I GGNNCC 3 cut(s) 378, 470, 471
PspPI GGNCC 2 cut(s) 469, 680
PspPPI RGGWCCY 1 cut(s) 469
PstI CTGCAG 1 cut(s) 485
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 3 cut(s) 312, 654, 739
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 4 cut(s) 148, 477, 499, 585
Sau96I GGNCC 2 cut(s) 469, 680
ScaI AGTACT 1 cut(s) 30
SchI GAGTC 1 cut(s) 418
SduI GDGCHC 3 cut(s) 229, 379, 652
SetI ASST 9 cut(s) 190, 229, 246, 253, 382, 407, 415, 555, 596
SfaNI GCATC 2 cut(s) 15, 268
SfcI CTRYAG 1 cut(s) 481
SfuI TTCGAA 1 cut(s) 709
SinI GGWCC 1 cut(s) 469
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 6 cut(s) 69, 109, 307, 439, 566, 726
SsiI CCGC 4 cut(s) 432, 517, 561, 601
SspMI CTAG 3 cut(s) 77, 234, 687
SstI GAGCTC 1 cut(s) 229
TaaI ACNGT 3 cut(s) 90, 220, 534
TaqI TCGA 3 cut(s) 9, 597, 709
TasI AATT 6 cut(s) 69, 109, 307, 439, 566, 726
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 312, 654, 739
Tru9I TTAA 3 cut(s) 312, 654, 739
TscAI CASTG 3 cut(s) 43, 270, 434
TseFI GTSAC 1 cut(s) 421
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 421
TspDTI ATGAA 3 cut(s) 122, 465, 630
TspRI CASTG 3 cut(s) 43, 270, 434
Van91I CCANNNNNTGG 1 cut(s) 494
VpaK11BI GGWCC 1 cut(s) 469
XapI RAATTY 2 cut(s) 109, 566
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 3 cut(s) 77, 234, 687
ZrmI AGTACT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.