Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008138

Physical Location & Seq

Genomic Coordinates Forward (+)

46803631 .. 46804017

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0316500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGTGTTCTTAATGTTATCGGAGTTACAGCAGTTCTACTGCTATTTTTCATAAGCATGCAATTGTCTGAGGCTGGCAGGGTGTTGCATGACGAGGACGAAAACTTGACGAAGAAGGCTGTTCTTCCTCCCGGTGGACCTAATGGTCACACCAACGTTCCTGGTCCTGCGACTCCTACTAGTGGTCATGCTGCAACCATTAACCAAAGAAACTTTGCAGGCCACATTACTACAGAAAACTCGACGAAGAACAAACTTTTCGTTTTAATGGAGTCGAAGCAGAAAGGTGGACGCCCTCCCCAGGGACCTAATCCTCCCACCAACGTGCCTGGTCCTAAGCCTCCTGCTAGTGGTCATGCTGCTTCAACCATTAACCAAAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

128

Amino Acids

13.37

Weight (kDa)

9.87

Isoelectric Point (pI)

33.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008138)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22960
malus_domestica	MD10G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr6g0302721 RchiOBHm_Chr7g0211711
rosa_laevigata	RLG00000002977 RLG00000002982 RLG00000002983 RLG00000011144
rosa_multiflora	Rmu_sc0001875.1_g000009 Rmu_sc0009897.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247580 Rroxscaffold_7G00165380
rosa_rugosa	Rorug06G0316500 Rorug07G0127200
rosa_samantha	Rh6BG472700 Rh6CG442300 Rh6DG429000 Rh7AG260000 Rh7AG260200 Rh7BG253700 Rh7CG276900 Rh7DG267100
rosa_wichuraiana	Rw6G037220 Rw7G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
AclI	AACGTT	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	292
AfiI	CCNNNNNNNGG	5 cut(s)	134, 182, 301, 302, 350
AgsI	TTSAA	1 cut(s)	366
AhlI	ACTAGT	1 cut(s)	179
AjnI	CCWGG	3 cut(s)	160, 300, 328
AleI	CACNNNNGTG	1 cut(s)	323
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	191, 359
AspS9I	GGNCC	4 cut(s)	137, 164, 305, 332
AsuC2I	CCSGG	1 cut(s)	132
AvaII	GGWCC	4 cut(s)	137, 164, 305, 332
BbvI	GCAGC	2 cut(s)	178, 346
BciT130I	CCWGG	3 cut(s)	162, 302, 330
BcnI	CCSGG	1 cut(s)	132
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	180, 348
BfmI	CTRYAG	1 cut(s)	231
BisI	GCNGC	2 cut(s)	192, 360
BlsI	GCNGC	2 cut(s)	193, 361
Bme1390I	CCNGG	4 cut(s)	132, 162, 302, 330
Bme18I	GGWCC	4 cut(s)	137, 164, 305, 332
BmgT120I	GGNCC	4 cut(s)	137, 164, 305, 332
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	4 cut(s)	132, 162, 302, 330
Bpu10I	CCTNAGC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	300, 301
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 182, 301, 302, 350
BseBI	CCWGG	3 cut(s)	162, 302, 330
BseDI	CCNNGG	2 cut(s)	300, 301
BseLI	CCNNNNNNNGG	5 cut(s)	134, 182, 301, 302, 350
BseMII	CTCAG	1 cut(s)	60
BseXI	GCAGC	2 cut(s)	178, 346
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	5 cut(s)	134, 182, 301, 302, 350
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	1 cut(s)	306
BssECI	CCNNGG	2 cut(s)	300, 301
BssNI	GRCGYC	1 cut(s)	292
Bst2UI	CCWGG	3 cut(s)	162, 302, 330
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	59, 76, 220
BstDEI	CTNAG	2 cut(s)	69, 336
BstNI	CCWGG	3 cut(s)	162, 302, 330
BstNSI	RCATGY	1 cut(s)	61
BstSCI	CCNGG	4 cut(s)	130, 160, 300, 328
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	178, 346
BsuRI	GGCC	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	59, 76, 220
Cfr13I	GGNCC	4 cut(s)	137, 164, 305, 332
CseI	GACGC	1 cut(s)	300
CviAII	CATG	4 cut(s)	58, 89, 188, 356
CviJI	RGCY	4 cut(s)	74, 119, 222, 340
CviKI_1	RGCY	4 cut(s)	74, 119, 222, 340
DdeI	CTNAG	2 cut(s)	69, 336
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eco47I	GGWCC	4 cut(s)	137, 164, 305, 332
EcoO109I	RGGNCCY	1 cut(s)	305
EcoRII	CCWGG	3 cut(s)	160, 300, 328
FaeI	CATG	4 cut(s)	61, 92, 191, 359
FaiI	YATR	5 cut(s)	53, 59, 90, 189, 357
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	4 cut(s)	57, 88, 187, 355
Fnu4HI	GCNGC	2 cut(s)	192, 360
Fsp4HI	GCNGC	2 cut(s)	192, 360
FspBI	CTAG	2 cut(s)	180, 348
GluI	GCNGC	2 cut(s)	192, 360
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	300
Hin1I	GRCGYC	1 cut(s)	292
Hin1II	CATG	4 cut(s)	61, 92, 191, 359
HinfI	GANTC	2 cut(s)	172, 272
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	2 cut(s)	137, 290
Hpy188I	TCNGA	2 cut(s)	23, 70
Hpy8I	GTNNAC	2 cut(s)	137, 290
Hpy99I	CGWCG	1 cut(s)	247
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	156, 324
HpyCH4V	TGCA	4 cut(s)	61, 88, 194, 218
HpyF3I	CTNAG	2 cut(s)	69, 336
HpySE526I	ACGT	2 cut(s)	156, 324
Hsp92I	GRCGYC	1 cut(s)	292
Hsp92II	CATG	4 cut(s)	61, 92, 191, 359
Lsp1109I	GCAGC	2 cut(s)	178, 346
MaeI	CTAG	2 cut(s)	180, 348
MaeII	ACGT	2 cut(s)	156, 324
MaeIII	GTNAC	2 cut(s)	25, 146
MboII	GAAGA	3 cut(s)	116, 124, 259
MfeI	CAATTG	1 cut(s)	62
MluCI	AATT	2 cut(s)	62, 382
MlyI	GAGTC	2 cut(s)	166, 281
MnlI	CCTC	6 cut(s)	64, 88, 138, 306, 324, 351
MseI	TTAA	5 cut(s)	12, 201, 266, 372, 385
MslI	CAYNNNNRTG	2 cut(s)	56, 323
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	4 cut(s)	132, 162, 302, 330
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	3 cut(s)	162, 302, 330
NciI	CCSGG	1 cut(s)	132
NlaIII	CATG	4 cut(s)	61, 92, 191, 359
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	323
PaeI	GCATGC	1 cut(s)	61
PasI	CCCWGGG	1 cut(s)	301
PkrI	GCNGC	2 cut(s)	193, 361
PleI	GAGTC	2 cut(s)	166, 280
PpsI	GAGTC	2 cut(s)	166, 280
PpuMI	RGGWCCY	1 cut(s)	305
Psp1406I	AACGTT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	305
Psp6I	CCWGG	3 cut(s)	160, 300, 328
PspGI	CCWGG	3 cut(s)	160, 300, 328
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	4 cut(s)	137, 164, 305, 332
PspPPI	RGGWCCY	1 cut(s)	305
RseI	CAYNNNNRTG	2 cut(s)	56, 323
SaqAI	TTAA	5 cut(s)	12, 201, 266, 372, 385
SatI	GCNGC	2 cut(s)	192, 360
Sau96I	GGNCC	4 cut(s)	137, 164, 305, 332
SchI	GAGTC	2 cut(s)	166, 281
ScrFI	CCNGG	4 cut(s)	132, 162, 302, 330
SetI	ASST	5 cut(s)	142, 159, 289, 310, 327
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	4 cut(s)	137, 164, 305, 332
SmiMI	CAYNNNNRTG	2 cut(s)	56, 323
SpeI	ACTAGT	1 cut(s)	179
SphI	GCATGC	1 cut(s)	61
Sse9I	AATT	2 cut(s)	62, 382
SspMI	CTAG	2 cut(s)	180, 348
StyD4I	CCNGG	4 cut(s)	130, 160, 300, 328
TaiI	ACGT	2 cut(s)	159, 327
TaqI	TCGA	2 cut(s)	242, 275
TasI	AATT	2 cut(s)	62, 382
Tru1I	TTAA	5 cut(s)	12, 201, 266, 372, 385
Tru9I	TTAA	5 cut(s)	12, 201, 266, 372, 385
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	2 cut(s)	191, 359
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	40
VpaK11BI	GGWCC	4 cut(s)	137, 164, 305, 332
XceI	RCATGY	1 cut(s)	61
XspI	CTAG	2 cut(s)	180, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.