Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008138

Physical Location & Seq

Genomic Coordinates Reverse (-)

28435076 .. 28436467

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTTGATAAACAAAGTGACGCAATGAACAGAATCTTACCAGAAGGACATGTTGCCATTCTTGCATTTCCGTTTGGCTGCCACGCAAAGCCTGTGCTTAACTTGGTGTGCAAGCTTGCGAAAGCTGCCCCAAACACGCGCTTTTCTTTCTTCAACACATTGAAATCTAACGACTCGCTGTTCTCAGAATCAAAATCCGAGATTTTGGATAACATAATACCCTACAATGTATCAGATGGTGTTCCAACAAATCATGTCTTAACAGGAAACCCGCCAGAGGCAGTGGACCTTTTCCTCAAGGCGGCGCCTGAAAACTTCAAAACCTGCATTGAAAAGGCAATGGCAGACACAAGCACGCAGATCAGTTGTCTAATAACAGATGGATTCTTGGTCTTTGGTAGCCAGATGGCTGAGAATTTGGATGTTCCATGGATTCCAATTTGGATACCCTTACCTTGCACCCTGTCTGCTCATATTTACACTGACGTTCTCCGCCATTTATATGCAAATGATGGTGTTGATGGTCAAGGCAAAACCCTAGAAGTCATTCCGGGTTTGTCTACAATGCGCATCGAGGACTTACCAGAAGAAGTACTTCCCAGTGAATCTCTATTCTCGCACACGCTCAGACGAATTGGACTAGTCCTACCACAGTCCACAGCCGTTGTCATGAATTTCTATCAAGAACTAAACCCCACGCTCCTTGAAAATGATCTCAAATCCAAGTTGCCCAAGTTGCTGAATGTAGGTTTTCTCTCCCTTTCATTACCACTACCACCATTGCCACCATCAGAATCCGATGCCACAGGCTGCCTTTCGTGGTTGGACGAGCAACGAGCTTTGTCTGTGGTGTATATCAGTTTCGGAACTGTGGGAGCTCCATCTAGGAGTGAGCTTGTAGCTCTGGCTGAGGCATTGGAAGCAATTGATGCACCATTTCTTTGGCCATTGTTTGGAGATCACAGAATGACTGCGCGTATGGTTGAGGAACTGTGGGGTGTTGGAGAAAAAGTGGAGGGCGGAGTATTCACAAAGAGTGGAGTGATCAAAAGCTTCGAGCGGATTTTGAAAAATGAAGAAGGGAAGAAGATGAGGGAGAAGGCCAGAGCCCTCAAGGAGATTGTAGGAGTGGCTGCTGGGCCTTCTGGAAGCGCTCTTCAAGATTTTCGAACTTTGGTGGATGTAATTTCTTTGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

399

Amino Acids

43.66

Weight (kDa)

5.1

Isoelectric Point (pI)

45.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008138)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22960
malus_domestica	MD10G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr6g0302721 RchiOBHm_Chr7g0211711
rosa_laevigata	RLG00000002977 RLG00000002982 RLG00000002983 RLG00000011144
rosa_multiflora	Rmu_sc0001875.1_g000009 Rmu_sc0009897.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247580 Rroxscaffold_7G00165380
rosa_rugosa	Rorug06G0316500 Rorug07G0127200
rosa_samantha	Rh6BG472700 Rh6CG442300 Rh6DG429000 Rh7AG260000 Rh7AG260200 Rh7BG253700 Rh7CG276900 Rh7DG267100
rosa_wichuraiana	Rw6G037220 Rw7G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	569
Acc36I	ACCTGC	1 cut(s)	332
AccB1I	GGYRCC	1 cut(s)	304
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccBSI	CCGCTC	1 cut(s)	1060
AccI	GTMKAC	1 cut(s)	560
AccII	CGCG	2 cut(s)	139, 976
AciI	CCGC	5 cut(s)	272, 302, 493, 1020, 1060
AcoI	YGGCCR	1 cut(s)	944
AcsI	RAATTY	2 cut(s)	415, 673
AcyI	GRCGYC	1 cut(s)	305
AfaI	GTAC	1 cut(s)	594
AfeI	AGCGCT	1 cut(s)	1153
AfiI	CCNNNNNNNGG	3 cut(s)	277, 301, 953
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	154, 163, 319, 332, 707, 1069, 1160
AhlI	ACTAGT	1 cut(s)	640
AluBI	AGCT	7 cut(s)	115, 125, 839, 878, 895, 902, 1053
AluI	AGCT	7 cut(s)	115, 125, 839, 878, 895, 902, 1053
Alw21I	GWGCWC	1 cut(s)	880
Aor51HI	AGCGCT	1 cut(s)	1153
AoxI	GGCC	3 cut(s)	944, 1101, 1139
ApeKI	GCWGC	4 cut(s)	78, 125, 810, 1133
ApoI	RAATTY	2 cut(s)	415, 673
Asp700I	GAANNNNTTC	2 cut(s)	546, 594
AspLEI	GCGC	5 cut(s)	141, 307, 570, 976, 1154
AspS9I	GGNCC	2 cut(s)	286, 1139
AsuC2I	CCSGG	1 cut(s)	552
AsuII	TTCGAA	1 cut(s)	1168
AvaII	GGWCC	1 cut(s)	286
BalI	TGGCCA	1 cut(s)	946
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	880, 1111
Bbv12I	GWGCWC	1 cut(s)	880
BbvCI	CCTCAGC	1 cut(s)	909
BbvI	GCAGC	4 cut(s)	65, 112, 797, 1120
BccI	CCATC	7 cut(s)	230, 374, 400, 506, 515, 796, 889
BceAI	ACGGC	1 cut(s)	647
BciVI	GTATCC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	1044
BcnI	CCSGG	1 cut(s)	552
BcuI	ACTAGT	1 cut(s)	640
BfaI	CTAG	3 cut(s)	539, 641, 885
BfoI	RGCGCY	2 cut(s)	308, 1155
BfuAI	ACCTGC	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	438
BisI	GCNGC	5 cut(s)	79, 126, 303, 811, 1134
BlsI	GCNGC	5 cut(s)	80, 127, 304, 812, 1135
BmcAI	AGTACT	1 cut(s)	594
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	286, 1139
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	552
BmrI	ACTGGG	1 cut(s)	594
BmsI	GCATC	3 cut(s)	579, 790, 919
BmuI	ACTGGG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	909
Bpu14I	TTCGAA	1 cut(s)	1168
BpuEI	CTTGAG	2 cut(s)	281, 1097
BpuMI	CCSGG	1 cut(s)	552
BsaHI	GRCGYC	1 cut(s)	305
BsaJI	CCNNGG	1 cut(s)	428
BsaXI	ACNNNNNCTCC	2 cut(s)	996, 1026
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 301, 953
Bse1I	ACTGG	1 cut(s)	600
Bse3DI	GCAATG	3 cut(s)	30, 345, 779
BseDI	CCNNGG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	427, 1186
BseLI	CCNNNNNNNGG	3 cut(s)	277, 301, 953
BseMI	GCAATG	3 cut(s)	30, 345, 779
BseMII	CTCAG	4 cut(s)	198, 402, 640, 900
BseNI	ACTGG	1 cut(s)	600
BseXI	GCAGC	4 cut(s)	65, 112, 797, 1120
BseYI	CCCAGC	1 cut(s)	1136
Bsh1236I	CGCG	2 cut(s)	139, 976
BshFI	GGCC	3 cut(s)	946, 1103, 1141
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	1 cut(s)	551
BslI	CCNNNNNNNGG	3 cut(s)	277, 301, 953
BsnI	GGCC	3 cut(s)	946, 1103, 1141
Bsp119I	TTCGAA	1 cut(s)	1168
Bsp1286I	GDGCHC	2 cut(s)	880, 1111
Bsp143I	GATC	4 cut(s)	360, 712, 958, 1044
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	5 cut(s)	272, 302, 493, 1020, 1060
BspANI	GGCC	3 cut(s)	946, 1103, 1141
BspCNI	CTCAG	4 cut(s)	197, 403, 639, 901
BspFNI	CGCG	2 cut(s)	139, 976
BspHI	TCATGA	1 cut(s)	669
BspLI	GGNNCC	1 cut(s)	306
BspMI	ACCTGC	1 cut(s)	332
BspQI	GCTCTTC	1 cut(s)	1161
BspT104I	TTCGAA	1 cut(s)	1168
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	1060
BsrDI	GCAATG	3 cut(s)	30, 345, 779
BsrI	ACTGG	1 cut(s)	600
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	4 cut(s)	360, 712, 958, 1044
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	654, 871, 993
Bst6I	CTCTTC	1 cut(s)	1161
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	1 cut(s)	929
BstBI	TTCGAA	1 cut(s)	1168
BstC8I	GCNNGC	3 cut(s)	113, 117, 356
BstDEI	CTNAG	4 cut(s)	184, 411, 626, 909
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	427, 1186
BstFNI	CGCG	2 cut(s)	139, 976
BstH2I	RGCGCY	2 cut(s)	308, 1155
BstHHI	GCGC	5 cut(s)	141, 307, 570, 976, 1154
BstKTI	GATC	4 cut(s)	363, 715, 961, 1047
BstMBI	GATC	4 cut(s)	360, 712, 958, 1044
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 125, 736, 920, 929
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	550
BstUI	CGCG	2 cut(s)	139, 976
BstV1I	GCAGC	4 cut(s)	65, 112, 797, 1120
BstXI	CCANNNNNNTGG	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	946, 1103, 1141
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	427, 1186
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	3 cut(s)	288, 480, 607
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	3 cut(s)	113, 117, 356
CciI	TCATGA	1 cut(s)	669
CfoI	GCGC	5 cut(s)	141, 307, 570, 976, 1154
Cfr13I	GGNCC	2 cut(s)	286, 1139
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	593
CspCI	CAANNNNNGTGG	4 cut(s)	646, 681, 685, 720
CviAII	CATG	4 cut(s)	50, 254, 429, 670
CviQI	GTAC	1 cut(s)	593
DdeI	CTNAG	4 cut(s)	184, 411, 626, 909
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	4 cut(s)	362, 714, 960, 1046
DpnII	GATC	4 cut(s)	360, 712, 958, 1044
EaeI	YGGCCR	1 cut(s)	944
Eam1104I	CTCTTC	1 cut(s)	1161
EarI	CTCTTC	1 cut(s)	1161
EciI	GGCGGA	2 cut(s)	482, 1035
Ecl136II	GAGCTC	1 cut(s)	878
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	2 cut(s)	880, 1111
Eco47I	GGWCC	1 cut(s)	286
Eco47III	AGCGCT	1 cut(s)	1153
Eco53kI	GAGCTC	1 cut(s)	878
EcoICRI	GAGCTC	1 cut(s)	878
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	2 cut(s)	880, 1111
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	428
FaeI	CATG	4 cut(s)	53, 257, 432, 673
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	4 cut(s)	49, 253, 428, 669
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	1044
FblI	GTMKAC	1 cut(s)	560
Fnu4HI	GCNGC	5 cut(s)	79, 126, 303, 811, 1134
FokI	GGATG	2 cut(s)	434, 1193
FriOI	GRGCYC	2 cut(s)	880, 1111
Fsp4HI	GCNGC	5 cut(s)	79, 126, 303, 811, 1134
FspAI	RTGCGCAY	1 cut(s)	569
FspBI	CTAG	3 cut(s)	539, 641, 885
FspI	TGCGCA	1 cut(s)	569
GlaI	GCGC	5 cut(s)	140, 306, 569, 975, 1153
GluI	GCNGC	5 cut(s)	79, 126, 303, 811, 1134
GsaI	CCCAGC	1 cut(s)	1140
HaeII	RGCGCY	2 cut(s)	308, 1155
HaeIII	GGCC	3 cut(s)	946, 1103, 1141
HapII	CCGG	1 cut(s)	551
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	5 cut(s)	141, 307, 570, 976, 1154
Hin1I	GRCGYC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	53, 257, 432, 673
Hin6I	GCGC	5 cut(s)	139, 305, 568, 974, 1152
HinP1I	GCGC	5 cut(s)	139, 305, 568, 974, 1152
HindIII	AAGCTT	2 cut(s)	113, 1051
HinfI	GANTC	7 cut(s)	33, 173, 188, 384, 433, 605, 794
HpaII	CCGG	1 cut(s)	551
Hpy166II	GTNNAC	3 cut(s)	286, 561, 657
Hpy188I	TCNGA	7 cut(s)	187, 199, 235, 629, 793, 799, 866
Hpy188III	TCNNGA	4 cut(s)	670, 683, 1146, 1160
Hpy8I	GTNNAC	3 cut(s)	286, 561, 657
HpyAV	CCTTC	4 cut(s)	38, 1073, 1093, 1152
HpyCH4III	ACNGT	3 cut(s)	654, 871, 993
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	6 cut(s)	65, 111, 327, 459, 506, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 125, 736, 920, 929
HpyF3I	CTNAG	4 cut(s)	184, 411, 626, 909
HpySE526I	ACGT	1 cut(s)	486
Hsp92I	GRCGYC	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	53, 257, 432, 673
HspAI	GCGC	5 cut(s)	139, 305, 568, 974, 1152
KasI	GGCGCC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	1044
Kzo9I	GATC	4 cut(s)	360, 712, 958, 1044
LguI	GCTCTTC	1 cut(s)	1161
LmnI	GCTCC	3 cut(s)	705, 875, 883
Lsp1109I	GCAGC	4 cut(s)	65, 112, 797, 1120
LweI	GCATC	3 cut(s)	579, 790, 919
MaeI	CTAG	3 cut(s)	539, 641, 885
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	4 cut(s)	362, 714, 960, 1046
MbiI	CCGCTC	1 cut(s)	1060
MboI	GATC	4 cut(s)	360, 712, 958, 1044
MboII	GAAGA	6 cut(s)	142, 599, 1088, 1096, 1099, 1148
MfeI	CAATTG	1 cut(s)	924
MhlI	GDGCHC	2 cut(s)	880, 1111
MlsI	TGGCCA	1 cut(s)	946
MluCI	AATT	6 cut(s)	415, 438, 633, 673, 924, 1185
MluNI	TGGCCA	1 cut(s)	946
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	3 cut(s)	269, 804, 982
MnlI	CCTC	8 cut(s)	271, 305, 568, 904, 979, 1009, 1086, 1121
Mox20I	TGGCCA	1 cut(s)	946
MroXI	GAANNNNTTC	2 cut(s)	546, 594
MscI	TGGCCA	1 cut(s)	946
MseI	TTAA	3 cut(s)	99, 260, 1198
MslI	CAYNNNNRTG	1 cut(s)	501
Msp20I	TGGCCA	1 cut(s)	946
MspI	CCGG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	924
MvnI	CGCG	2 cut(s)	139, 976
MwoI	GCNNNNNNNGC	5 cut(s)	62, 125, 736, 920, 929
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	552
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	4 cut(s)	360, 712, 958, 1044
NlaIII	CATG	4 cut(s)	53, 257, 432, 673
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	17
NsbI	TGCGCA	1 cut(s)	569
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	1168
PagI	TCATGA	1 cut(s)	669
PciI	ACATGT	1 cut(s)	49
PciSI	GCTCTTC	1 cut(s)	1161
PdmI	GAANNNNTTC	2 cut(s)	546, 594
PfeI	GAWTC	6 cut(s)	33, 188, 384, 433, 605, 794
PflMI	CCANNNNNTGG	1 cut(s)	953
PkrI	GCNGC	5 cut(s)	80, 127, 304, 812, 1135
PleI	GAGTC	1 cut(s)	167
PluTI	GGCGCC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	880
PspFI	CCCAGC	1 cut(s)	1136
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	286, 1139
RsaI	GTAC	1 cut(s)	594
RsaNI	GTAC	1 cut(s)	593
RseI	CAYNNNNRTG	1 cut(s)	501
SacI	GAGCTC	1 cut(s)	880
SapI	GCTCTTC	1 cut(s)	1161
SaqAI	TTAA	3 cut(s)	99, 260, 1198
SatI	GCNGC	5 cut(s)	79, 126, 303, 811, 1134
Sau3AI	GATC	4 cut(s)	360, 712, 958, 1044
Sau96I	GGNCC	2 cut(s)	286, 1139
ScaI	AGTACT	1 cut(s)	594
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	2 cut(s)	880, 1111
SfaNI	GCATC	3 cut(s)	579, 790, 919
SfoI	GGCGCC	1 cut(s)	306
SfuI	TTCGAA	1 cut(s)	1168
SinI	GGWCC	1 cut(s)	286
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	2 cut(s)	296, 1112
SmoI	CTYRAG	2 cut(s)	296, 1112
SpeI	ACTAGT	1 cut(s)	640
Sse9I	AATT	6 cut(s)	415, 438, 633, 673, 924, 1185
SsiI	CCGC	5 cut(s)	272, 302, 493, 1020, 1060
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	3 cut(s)	539, 641, 885
SstI	GAGCTC	1 cut(s)	880
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	428
TaaI	ACNGT	3 cut(s)	654, 871, 993
TaiI	ACGT	1 cut(s)	489
TaqI	TCGA	3 cut(s)	573, 1056, 1168
TasI	AATT	6 cut(s)	415, 438, 633, 673, 924, 1185
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	1 cut(s)	305
TfiI	GAWTC	6 cut(s)	33, 188, 384, 433, 605, 794
Tru1I	TTAA	3 cut(s)	99, 260, 1198
Tru9I	TTAA	3 cut(s)	99, 260, 1198
TscAI	CASTG	3 cut(s)	288, 487, 607
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	4 cut(s)	78, 125, 810, 1133
Tsp45I	GTSAC	1 cut(s)	17
TspDTI	ATGAA	4 cut(s)	41, 686, 753, 1089
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	3 cut(s)	288, 487, 607
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	415, 673
XceI	RCATGY	1 cut(s)	53
XmiI	GTMKAC	1 cut(s)	560
XmnI	GAANNNNTTC	2 cut(s)	546, 594
XspI	CTAG	3 cut(s)	539, 641, 885
ZrmI	AGTACT	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.