Rorug07G0127200

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0003040
Physical Location & Seq
Reverse (-)
10028061 .. 10030296
2236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0127200.1

Sequence Viewer

Length: 1059 bp
ATGGATTTGGCACATTGCTGCTTAGAGGGCAATGCTGATGCGGTGGAGTTTTGTCCGCACGAATCGTATCGCCATGTTCTGGCGGCTTCAACTTACACATTGCAAGAGGGCGATCAGCCGAGTCGAGCAGGAAGCATATCGCTTTTCAGTGTTGATGCTGACACGGCTCGCCTGGATTTGTGTCAGCGCATTGAAACGGCGGGAATCTTTGATATAAAGTGGAACCCAGTTGGAGAATGCGGTGATCCTCTTCTTGCGCAAGCTGATGCTGATGGTTACTTGAGAATTCTCAGTCTTGGGTGCTCTTCAGATGAAGCAAAAGGGTTTTCTTTGAGAGAGATAGCTGATGAAAAGATCAGTTCTTCCATGTGCCTTTTCCTGGATTGGAACCCTTCAGCCACATCCATCACCGTGGGGCTTTCGGATGGTTCTGTCTCGATAGTTTCAGTGGGGGAGTCGCAGCTTGAGACTCAAGAATCGTGGAAAGCGCATGATTTTGAGGTTTGGACAACTTCATTTGATACCCACCAGCCCCAGTTAGTATACAGCGGCTCAGATGACTGCAAATTCAAATGCTGGGATTTGCGAGATGGTCCGTCGAAGTTGGCATTTCAGAATTCCAAGGTCCATACAATGGGAGTTACTTGCATAGCCAAAAACCCCAACGACCCCAATACTGTACTTACTGGTAGCTATGATGAGTACCTAAGGGTATGGGATGTAAGATCAATATCAAAACCAGTTAATGAAACGTCTACTTGTTTAGGAGGAGGAGTCTGGAGAATCAAGTACCATCCGTTTGTAAGCGGTCTAGTCTTGGCAGCTTGTATGCACAATGGCTTTTCTATTGTCAAGATTAATGGGGATAAAACTCAAGTCATTGAAACATACACTAAGCATGAGTCACTTGCATATGGAGCTGATTGGCATAGAGAGGTATCATTCCGTGAAGGCAAAGAAAATAGCACTTTAGTCGCAACGTGCTCGTTTTATGACCGCCTTCTCCGGATATGGATGCCCAAAAGTGATTTGAAGTTGCACCAGGACATTGTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

352

Amino Acids

39.02

Weight (kDa)

5.01

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 53 - 301 4.5e-13 CDC20/Fizzy WD40 domain
Beta-prop_THOC3 PF25174 126 - 199 9.3e-08 THOC3 beta-propeller domain
Beta-prop_WDR3_1st PF25173 126 - 265 8.8e-13 WDR3 first beta-propeller domain
WDR55 PF24796 127 - 242 5.4e-08 WDR55
WDR55 PF24796 127 - 253 2.3e-09 WDR55
WD40_Prp19 PF24814 127 - 275 2.3e-07 Prp19 WD40 domain
Beta-prop_WDR36-Utp21_1st PF25171 127 - 239 8.1e-07 WDR36/Utp21 first beta-propeller
Beta-prop_WDR5 PF25175 128 - 301 9.6e-12 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 135 - 255 5.9e-07 TEP-1 second beta-propeller
Beta-prop_EIPR1 PF23609 141 - 276 2.8e-08 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 206 - 315 1.8e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 258
AccB7I CCANNNNNTGG 2 cut(s) 79, 634
AccI GTMKAC 2 cut(s) 543, 755
AccIII TCCGGA 1 cut(s) 1005
AciI CCGC 8 cut(s) 41, 56, 83, 200, 240, 549, 807, 997
AclWI GGATC 1 cut(s) 239
AcsI RAATTY 3 cut(s) 285, 566, 616
AcuI CTGAAG 2 cut(s) 291, 378
AfaI GTAC 3 cut(s) 681, 704, 791
AfiI CCNNNNNNNGG 3 cut(s) 79, 379, 634
AgsI TTSAA 5 cut(s) 90, 194, 571, 884, 1033
AjnI CCWGG 3 cut(s) 171, 378, 1041
AluBI AGCT 6 cut(s) 263, 344, 463, 693, 824, 920
AluI AGCT 6 cut(s) 263, 344, 463, 693, 824, 920
Alw21I GWGCWC 2 cut(s) 305, 986
Alw26I GTCTC 2 cut(s) 439, 461
AlwI GGATC 1 cut(s) 239
Aor13HI TCCGGA 1 cut(s) 1005
ApeKI GCWGC 3 cut(s) 18, 460, 821
ApoI RAATTY 3 cut(s) 285, 566, 616
AseI ATTAAT 1 cut(s) 858
AspLEI GCGC 3 cut(s) 189, 259, 490
AspS9I GGNCC 2 cut(s) 593, 625
AsuHPI GGTGA 2 cut(s) 254, 400
AvaII GGWCC 2 cut(s) 593, 625
AxyI CCTNAGG 1 cut(s) 707
Bbv12I GWGCWC 2 cut(s) 305, 986
BbvI GCAGC 3 cut(s) 5, 472, 833
BccI CCATC 5 cut(s) 266, 413, 419, 584, 801
BceAI ACGGC 2 cut(s) 180, 213
BcgI CGANNNNNNTGC 4 cut(s) 955, 966, 989, 1000
BciT130I CCWGG 3 cut(s) 173, 380, 1043
BcoDI GTCTC 2 cut(s) 439, 461
BfaI CTAG 1 cut(s) 812
BisI GCNGC 5 cut(s) 19, 84, 461, 550, 822
BlsI GCNGC 5 cut(s) 20, 85, 462, 551, 823
Bme1390I CCNGG 3 cut(s) 173, 380, 1043
Bme18I GGWCC 2 cut(s) 593, 625
BmgT120I GGNCC 2 cut(s) 593, 625
BmiI GGNNCC 2 cut(s) 224, 389
BmrFI CCNGG 3 cut(s) 173, 380, 1043
BmrI ACTGGG 2 cut(s) 221, 529
BmsI GCATC 4 cut(s) 28, 145, 256, 1005
BmuI ACTGGG 2 cut(s) 221, 529
BpmI CTGGAG 1 cut(s) 799
BpuEI CTTGAG 4 cut(s) 301, 456, 485, 858
BsaBI GATNNNNATC 1 cut(s) 730
BsaJI CCNNGG 2 cut(s) 411, 621
BsaWI WCCGGW 1 cut(s) 1005
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 379, 634
Bse1I ACTGG 4 cut(s) 227, 535, 691, 740
Bse21I CCTNAGG 1 cut(s) 707
Bse3DI GCAATG 3 cut(s) 13, 37, 98
Bse8I GATNNNNATC 1 cut(s) 730
BseAI TCCGGA 1 cut(s) 1005
BseBI CCWGG 3 cut(s) 173, 380, 1043
BseDI CCNNGG 2 cut(s) 411, 621
BseGI GGATG 5 cut(s) 401, 430, 724, 793, 1020
BseJI GATNNNNATC 1 cut(s) 730
BseLI CCNNNNNNNGG 3 cut(s) 79, 379, 634
BseMI GCAATG 3 cut(s) 13, 37, 98
BseMII CTCAG 2 cut(s) 304, 567
BseNI ACTGG 4 cut(s) 227, 535, 691, 740
BseRI GAGGAG 2 cut(s) 783, 786
BseXI GCAGC 3 cut(s) 5, 472, 833
BseYI CCCAGC 1 cut(s) 576
BsiHKAI GWGCWC 2 cut(s) 305, 986
BsiSI CCGG 1 cut(s) 1006
BslI CCNNNNNNNGG 3 cut(s) 79, 379, 634
BsmAI GTCTC 2 cut(s) 439, 461
BsmI GAATGC 1 cut(s) 242
Bsp1286I GDGCHC 2 cut(s) 305, 986
Bsp13I TCCGGA 1 cut(s) 1005
Bsp143I GATC 4 cut(s) 112, 244, 354, 725
BspACI CCGC 8 cut(s) 41, 56, 83, 200, 240, 549, 807, 997
BspCNI CTCAG 2 cut(s) 303, 566
BspEI TCCGGA 1 cut(s) 1005
BspLI GGNNCC 2 cut(s) 224, 389
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 310
BsrDI GCAATG 3 cut(s) 13, 37, 98
BsrI ACTGG 4 cut(s) 227, 535, 691, 740
BssECI CCNNGG 2 cut(s) 411, 621
BssMI GATC 4 cut(s) 112, 244, 354, 725
BssNAI GTATAC 1 cut(s) 544
BssT1I CCWWGG 1 cut(s) 621
Bst1107I GTATAC 1 cut(s) 544
Bst2UI CCWGG 3 cut(s) 173, 380, 1043
Bst4CI ACNGT 2 cut(s) 412, 679
Bst6I CTCTTC 2 cut(s) 255, 310
BstC8I GCNNGC 2 cut(s) 169, 261
BstDEI CTNAG 5 cut(s) 22, 290, 553, 707, 894
BstDSI CCRYGG 1 cut(s) 411
BstF5I GGATG 5 cut(s) 401, 430, 724, 793, 1020
BstHHI GCGC 3 cut(s) 189, 259, 490
BstKTI GATC 4 cut(s) 115, 247, 357, 728
BstMAI GTCTC 2 cut(s) 439, 461
BstMBI GATC 4 cut(s) 112, 244, 354, 725
BstMWI GCNNNNNNNGC 3 cut(s) 27, 164, 917
BstNI CCWGG 3 cut(s) 173, 380, 1043
BstSCI CCNGG 3 cut(s) 171, 378, 1041
BstV1I GCAGC 3 cut(s) 5, 472, 833
BstXI CCANNNNNNTGG 1 cut(s) 412
BstZ17I GTATAC 1 cut(s) 544
Bsu36I CCTNAGG 1 cut(s) 707
BtgI CCRYGG 1 cut(s) 411
BtsCI GGATG 5 cut(s) 401, 430, 724, 793, 1020
BtsIMutI CAGTG 2 cut(s) 154, 453
Cac8I GCNNGC 2 cut(s) 169, 261
CfoI GCGC 3 cut(s) 189, 259, 490
Cfr13I GGNCC 2 cut(s) 593, 625
Csp6I GTAC 3 cut(s) 680, 703, 790
CspCI CAANNNNNGTGG 2 cut(s) 461, 496
CviAII CATG 4 cut(s) 74, 367, 491, 899
CviQI GTAC 3 cut(s) 680, 703, 790
DdeI CTNAG 5 cut(s) 22, 290, 553, 707, 894
DpnI GATC 4 cut(s) 114, 246, 356, 727
DpnII GATC 4 cut(s) 112, 244, 354, 725
Eam1104I CTCTTC 2 cut(s) 255, 310
EarI CTCTTC 2 cut(s) 255, 310
Eco130I CCWWGG 1 cut(s) 621
Eco47I GGWCC 2 cut(s) 593, 625
Eco57I CTGAAG 2 cut(s) 291, 378
Eco81I CCTNAGG 1 cut(s) 707
EcoRI GAATTC 2 cut(s) 285, 616
EcoRII CCWGG 3 cut(s) 171, 378, 1041
EcoT14I CCWWGG 1 cut(s) 621
ErhI CCWWGG 1 cut(s) 621
FaeI CATG 4 cut(s) 77, 370, 494, 902
FatI CATG 4 cut(s) 73, 366, 490, 898
FauI CCCGC 1 cut(s) 193
FauNDI CATATG 1 cut(s) 913
FblI GTMKAC 2 cut(s) 543, 755
Fnu4HI GCNGC 5 cut(s) 19, 84, 461, 550, 822
FokI GGATG 5 cut(s) 388, 437, 731, 780, 1027
Fsp4HI GCNGC 5 cut(s) 19, 84, 461, 550, 822
FspBI CTAG 1 cut(s) 812
FspI TGCGCA 1 cut(s) 258
GlaI GCGC 3 cut(s) 188, 258, 489
GluI GCNGC 5 cut(s) 19, 84, 461, 550, 822
GsaI CCCAGC 1 cut(s) 580
GsuI CTGGAG 1 cut(s) 799
HapII CCGG 1 cut(s) 1006
HhaI GCGC 3 cut(s) 189, 259, 490
Hin1II CATG 4 cut(s) 77, 370, 494, 902
Hin6I GCGC 3 cut(s) 187, 257, 488
HinP1I GCGC 3 cut(s) 187, 257, 488
HinfI GANTC 9 cut(s) 62, 121, 204, 455, 469, 476, 774, 783, 902
HpaII CCGG 1 cut(s) 1006
HphI GGTGA 2 cut(s) 254, 400
Hpy166II GTNNAC 2 cut(s) 544, 756
Hpy188I TCNGA 4 cut(s) 310, 424, 556, 615
Hpy188III TCNNGA 5 cut(s) 436, 473, 778, 853, 1006
Hpy8I GTNNAC 2 cut(s) 544, 756
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 3 cut(s) 402, 944, 1010
HpyCH4III ACNGT 2 cut(s) 412, 679
HpyCH4IV ACGT 2 cut(s) 752, 980
HpyCH4V TGCA 6 cut(s) 103, 564, 648, 832, 911, 1039
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 164, 917
HpyF3I CTNAG 5 cut(s) 22, 290, 553, 707, 894
HpySE526I ACGT 2 cut(s) 752, 980
Hsp92II CATG 4 cut(s) 77, 370, 494, 902
HspAI GCGC 3 cut(s) 187, 257, 488
Kpn2I TCCGGA 1 cut(s) 1005
Kzo9I GATC 4 cut(s) 112, 244, 354, 725
LguI GCTCTTC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 917
Lsp1109I GCAGC 3 cut(s) 5, 472, 833
LweI GCATC 4 cut(s) 28, 145, 256, 1005
MaeI CTAG 1 cut(s) 812
MaeII ACGT 2 cut(s) 752, 980
MaeIII GTNAC 3 cut(s) 275, 640, 903
MalI GATC 4 cut(s) 114, 246, 356, 727
MboI GATC 4 cut(s) 112, 244, 354, 725
MboII GAAGA 3 cut(s) 242, 297, 354
MhlI GDGCHC 2 cut(s) 305, 986
MluCI AATT 3 cut(s) 285, 566, 616
MlyI GAGTC 5 cut(s) 130, 463, 464, 783, 911
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 7 cut(s) 19, 100, 258, 493, 761, 764, 928
MroI TCCGGA 1 cut(s) 1005
MseI TTAA 2 cut(s) 744, 858
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 549
MspI CCGG 1 cut(s) 1006
MspR9I CCNGG 3 cut(s) 173, 380, 1043
Mva1269I GAATGC 1 cut(s) 242
MvaI CCWGG 3 cut(s) 173, 380, 1043
MwoI GCNNNNNNNGC 3 cut(s) 27, 164, 917
NdeI CATATG 1 cut(s) 913
NdeII GATC 4 cut(s) 112, 244, 354, 725
NlaIII CATG 4 cut(s) 77, 370, 494, 902
NlaIV GGNNCC 2 cut(s) 224, 389
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 1 cut(s) 903
NsbI TGCGCA 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 310
PctI GAATGC 1 cut(s) 242
PfeI GAWTC 4 cut(s) 62, 204, 476, 783
PflMI CCANNNNNTGG 2 cut(s) 79, 634
PfoI TCCNGGA 1 cut(s) 378
PkrI GCNGC 5 cut(s) 20, 85, 462, 551, 823
PleI GAGTC 5 cut(s) 129, 463, 463, 782, 910
PpsI GAGTC 5 cut(s) 129, 463, 463, 782, 910
PshBI ATTAAT 1 cut(s) 858
Psp6I CCWGG 3 cut(s) 171, 378, 1041
PspFI CCCAGC 1 cut(s) 576
PspGI CCWGG 3 cut(s) 171, 378, 1041
PspN4I GGNNCC 2 cut(s) 224, 389
PspPI GGNCC 2 cut(s) 593, 625
RsaI GTAC 3 cut(s) 681, 704, 791
RsaNI GTAC 3 cut(s) 680, 703, 790
RseI CAYNNNNRTG 1 cut(s) 410
SapI GCTCTTC 1 cut(s) 310
SaqAI TTAA 2 cut(s) 744, 858
SatI GCNGC 5 cut(s) 19, 84, 461, 550, 822
Sau3AI GATC 4 cut(s) 112, 244, 354, 725
Sau96I GGNCC 2 cut(s) 593, 625
SchI GAGTC 5 cut(s) 130, 463, 464, 783, 911
ScrFI CCNGG 3 cut(s) 173, 380, 1043
SduI GDGCHC 2 cut(s) 305, 986
SfaNI GCATC 4 cut(s) 28, 145, 256, 1005
SinI GGWCC 2 cut(s) 593, 625
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 4 cut(s) 280, 464, 471, 873
SmoI CTYRAG 4 cut(s) 280, 464, 471, 873
Sse9I AATT 3 cut(s) 285, 566, 616
SsiI CCGC 8 cut(s) 41, 56, 83, 200, 240, 549, 807, 997
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 3 cut(s) 171, 378, 1041
StyI CCWWGG 1 cut(s) 621
TaaI ACNGT 2 cut(s) 412, 679
TaiI ACGT 2 cut(s) 755, 983
TaqI TCGA 3 cut(s) 124, 437, 599
TasI AATT 3 cut(s) 285, 566, 616
TatI WGTACW 1 cut(s) 679
TauI GCSGC 2 cut(s) 86, 552
TfiI GAWTC 4 cut(s) 62, 204, 476, 783
Tru1I TTAA 2 cut(s) 744, 858
Tru9I TTAA 2 cut(s) 744, 858
TscAI CASTG 2 cut(s) 154, 453
TseFI GTSAC 1 cut(s) 903
TseI GCWGC 3 cut(s) 18, 460, 821
Tsp45I GTSAC 1 cut(s) 903
TspDTI ATGAA 4 cut(s) 327, 363, 504, 762
TspGWI ACGGA 3 cut(s) 585, 786, 935
TspRI CASTG 2 cut(s) 154, 453
Van91I CCANNNNNTGG 2 cut(s) 79, 634
VpaK11BI GGWCC 2 cut(s) 593, 625
VspI ATTAAT 1 cut(s) 858
XapI RAATTY 3 cut(s) 285, 566, 616
XmiI GTMKAC 2 cut(s) 543, 755
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.