Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

26450238 .. 26456529

Gene Structure 6292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGTATGGGGATTGCCAAGTAATGTCAACCATGGGAGGTGGGAACGTAGTCAACTCTGAAACCCTCTTTTCCTCGCCGATGCAAAACCCTAACTTCAACTTCATGCCCTTCCAGCCTTTCTCTTCCATCCTTCCGAAGGAAGAAACTGGGCTTATGACTAGAGGAAAGGAGGAGATGATGGAGAGTGGGTCTGGGAGTGAACACGCTGAAGAAAAGTACTCTGGCAACGAACAAGAGACCGAAGAACAACTGCAGCAACAGCCTCCCAAGAAGAAACGCTACCATCGCCATACCACTCACCAGATCCAGGAAATGGAAAATTTATTTAAGGAGTGTCCACACCCAGATGACAAGCAGAGGCAAAAGCTGAGCCTAGATCTGGGACTGAAACCACGCCAGGTCAAGTTTTGGTTTCAAAATCGCCGAACCCAAATGAAGGCACAACAAGACCGGGCTGATAATGTCATGCTTAGAGCTGAAAATGATACCCTAAAAAATGAGAATTACAGGCTTCAAGCTGCACTGCGCAACATTATATGCCCTAACTGTGGAGGTGCGGCTATGATTGGGGACATTGCCTTGGATGAACACCAACTTCATCTCGAAAATGCTAGACTCCGAGAAGAGTTGGAACGAGTTTGTTGCCTCTCCGGATACCCTGGGGGCCGGCAAATTCAAACGATGGGACCAGCGGCCCCTCTAATGGCGGCATCTTTGGACTTGGACATGAATATCTATTCAAGGCATTTCCCAGACCCAATGATGAGTTCATGTACTGATCATCATATGATCACCATGAGTAGTTTGCCACCAGAGCCTTCTCACTTTCCTGAGGGAGGTCTGTTGTTAGATGACGAGAAGACGCTTGCAATGAAGCTCGCTGCTTCCTCCCTCGAAGAACTTGTTAAGATGTGCACTGCTAGTGAGCCTCTTTGGATGAAAAACAGTGAGAATGGAATGGAAATGCTTAATGCTGAAGAACGAGCTCGTATGTTCCCTTGGCCTTTGAACTTCAAGCAGAACTTAAGTGATTTAAGAACTGAAGCTACTCGTGATACTGCTGTGGTCATAATGAATAGCATTAATCTTGTGGATGCCTTCCTTGATGCTACTAAGTGGATGGAATTGTTTCCTTCTATTGTTTCTAAAGCAAAAACAGTTCAAGTTATCTCAGCAGATCCTTCTGGTCAGGCAAAAGGTTCACTTCAGCTGATGTATGCGGAATTGCAAGTTGTTTCTCCTCTGGTGCCAACTAGAGAAGCTCATTTTCTGCGCTATTGTCAACAAAATGAAGAGGAGGGAAGTTGGGCAATTGTCGATTTCCCAATTGACAGTTTCCATGGTAGCTTCCAACCTTCCTTTCCCCGGTACAAGAGATGGCCTTCCGGCTGTCTCATCCAAGATATGCCCAATGGATACTCAAGGGTTACCTGGGTAGAACATGCAGAGGTAGAGGAGAAGCCTGTCCATCAAATATTCAGTCATTATGTCTACAGTGGGATGGCTTTTGGGGCGCATAGATGGTTGGCTGTTTTACAGAGGCAATGTGAAAGGGTTGCAAGTCTCATGGCCAGAAATATATCAGACCTCGGAGTGATACCTTCTCCTGAGGCAAGAAGGAATTTGATGAGACTAGCCCAGAGAATGATAAGAACATTCAGTGTGAACATAAGCACATCCGGTGGGCAGGCATGGACGGCTCTATCGGATTCCCCAGATGACACTATTCGAATAACCACAAGGAAAGTCTCAGAGGCTGGCCAACCCAATGGAGTCATTCTCAGTGCAGTTTCCACCACCTGGCTCCCTTATTCTCACTACCGTGTCTTTGAGCTCTTAAGGGATGAACGTCGCAGAGCTCAGCTTGATGTTCTTTCCAATGGAACTTCCTTGCAAGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAATTGCATTTCTGTTCTTCGCGTTAATGTAGGTTACACCACTGAATTTTGTTTCTCATTATACTTTGTACATTTTTTAGTGGGAAAAATTCAAATTTCAAAAAAAAAGAAGAAAAAAAAGGAGGGTTCCTTGAAATTGTCATTTTGTACCATCGTTGTCTATAGGACCACTTGGTTTGAGCCTCATTTTCAGTCTATTCAATTGCTTATACCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

716

Amino Acids

81.33

Weight (kDa)

6.54

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 146	3.5e-19	Homeodomain
START	PF01852	294 - 518	2.4e-41	START domain
PDF2_C	PF25797	535 - 654	1.9e-40	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
AccB1I	GGYRCC	1 cut(s)	1246
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1800
AccI	GTMKAC	1 cut(s)	1491
AccII	CGCG	1 cut(s)	1953
AccIII	TCCGGA	1 cut(s)	650
AciI	CCGC	4 cut(s)	557, 692, 707, 1220
AclWI	GGATC	2 cut(s)	298, 1172
AcoI	YGGCCR	2 cut(s)	1569, 1759
AcsI	RAATTY	6 cut(s)	319, 672, 1621, 1976, 2019, 2025
AcuI	CTGAAG	4 cut(s)	228, 996, 1062, 1190
AfaI	GTAC	5 cut(s)	218, 775, 1370, 2001, 2080
AflII	CTTAAG	2 cut(s)	1024, 1837
AjnI	CCWGG	6 cut(s)	306, 396, 658, 1430, 1799, 1927
AjuI	GAANNNNNNNTTGG	4 cut(s)	751, 783, 1344, 1376
AleI	CACNNNNGTG	1 cut(s)	1821
Alw21I	GWGCWC	4 cut(s)	917, 988, 1836, 1861
Alw26I	GTCTC	5 cut(s)	230, 1397, 1568, 1624, 1753
Alw44I	GTGCAC	1 cut(s)	913
AlwI	GGATC	2 cut(s)	298, 1172
AlwNI	CAGNNNCTG	1 cut(s)	1757
Aor13HI	TCCGGA	1 cut(s)	650
AoxI	GGCC	6 cut(s)	664, 693, 1001, 1379, 1569, 1759
ApaLI	GTGCAC	1 cut(s)	913
ApeKI	GCWGC	3 cut(s)	253, 518, 881
ApoI	RAATTY	6 cut(s)	319, 672, 1621, 1976, 2019, 2025
ArsI	GACNNNNNNTTYG	2 cut(s)	1465, 1497
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	1128
AspLEI	GCGC	3 cut(s)	528, 1275, 1516
AspS9I	GGNCC	4 cut(s)	664, 686, 694, 2097
AsuC2I	CCSGG	2 cut(s)	452, 1366
AsuHPI	GGTGA	2 cut(s)	290, 784
AsuII	TTCGAA	1 cut(s)	1729
AvaII	GGWCC	2 cut(s)	686, 2097
AxyI	CCTNAGG	2 cut(s)	831, 1608
BaeGI	GKGCMC	1 cut(s)	917
BaeI	ACNNNNGTAYC	2 cut(s)	1047, 1080
BalI	TGGCCA	2 cut(s)	1571, 1761
BanI	GGYRCC	1 cut(s)	1246
BanII	GRGCYC	3 cut(s)	988, 1836, 1861
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	866
Bbv12I	GWGCWC	4 cut(s)	917, 988, 1836, 1861
BbvI	GCAGC	3 cut(s)	265, 505, 868
BceAI	ACGGC	1 cut(s)	1713
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BciT130I	CCWGG	6 cut(s)	308, 398, 660, 1432, 1801, 1929
BciVI	GTATCC	2 cut(s)	647, 1409
BclI	TGATCA	2 cut(s)	778, 789
BcnI	CCSGG	2 cut(s)	452, 1366
BcoDI	GTCTC	5 cut(s)	230, 1397, 1568, 1624, 1753
BfaI	CTAG	6 cut(s)	159, 374, 612, 921, 1254, 1634
BfmI	CTRYAG	3 cut(s)	251, 1492, 2092
BfrI	CTTAAG	2 cut(s)	1024, 1837
BfuI	GTATCC	2 cut(s)	647, 1409
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	6 cut(s)	254, 519, 558, 693, 708, 882
BlpI	GCTNAGC	2 cut(s)	368, 1860
BlsI	GCNGC	6 cut(s)	255, 520, 559, 694, 709, 883
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	8 cut(s)	308, 398, 452, 660, 1366, 1432, 1801, 1929
Bme18I	GGWCC	2 cut(s)	686, 2097
BmgT120I	GGNCC	4 cut(s)	664, 686, 694, 2097
BmiI	GGNNCC	6 cut(s)	665, 687, 696, 1248, 1805, 2059
BmrFI	CCNGG	8 cut(s)	308, 398, 452, 660, 1366, 1432, 1801, 1929
BmrI	ACTGGG	1 cut(s)	156
BmsI	GCATC	4 cut(s)	69, 719, 1084, 1096
BmuI	ACTGGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	866
BplI	GAGNNNNNCTC	2 cut(s)	1764, 1796
Bpu1102I	GCTNAGC	2 cut(s)	368, 1860
Bpu14I	TTCGAA	1 cut(s)	1729
BpuEI	CTTGAG	1 cut(s)	1405
BpuMI	CCSGG	2 cut(s)	452, 1366
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	9 cut(s)	30, 579, 658, 659, 998, 1339, 1364, 1431, 1588
BsaWI	WCCGGW	2 cut(s)	650, 1679
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	1 cut(s)	151
Bse21I	CCTNAGG	2 cut(s)	831, 1608
Bse3DI	GCAATG	4 cut(s)	573, 876, 1550, 1908
BseAI	TCCGGA	1 cut(s)	650
BseBI	CCWGG	6 cut(s)	308, 398, 660, 1432, 1801, 1929
BseDI	CCNNGG	9 cut(s)	30, 579, 658, 659, 998, 1339, 1364, 1431, 1588
BseMI	GCAATG	4 cut(s)	573, 876, 1550, 1908
BseMII	CTCAG	7 cut(s)	359, 822, 1185, 1599, 1764, 1795, 1874
BseNI	ACTGG	1 cut(s)	151
BseRI	GAGGAG	4 cut(s)	185, 1230, 1310, 1469
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	3 cut(s)	265, 505, 868
BsgI	GTGCAG	2 cut(s)	504, 1806
Bsh1236I	CGCG	1 cut(s)	1953
BshFI	GGCC	6 cut(s)	666, 695, 1003, 1381, 1571, 1761
BshNI	GGYRCC	1 cut(s)	1246
BsiHKAI	GWGCWC	4 cut(s)	917, 988, 1836, 1861
BsiSI	CCGG	6 cut(s)	451, 651, 667, 1366, 1386, 1680
BslFI	GGGAC	3 cut(s)	396, 584, 699
BsmAI	GTCTC	5 cut(s)	230, 1397, 1568, 1624, 1753
BsmFI	GGGAC	3 cut(s)	396, 584, 699
BsnI	GGCC	6 cut(s)	666, 695, 1003, 1381, 1571, 1761
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	1729
Bsp1286I	GDGCHC	4 cut(s)	917, 988, 1836, 1861
Bsp13I	TCCGGA	1 cut(s)	650
Bsp1407I	TGTACA	1 cut(s)	1999
Bsp143I	GATC	5 cut(s)	303, 376, 778, 789, 1177
Bsp1720I	GCTNAGC	2 cut(s)	368, 1860
Bsp19I	CCATGG	2 cut(s)	30, 1339
BspACI	CCGC	4 cut(s)	557, 692, 707, 1220
BspANI	GGCC	6 cut(s)	666, 695, 1003, 1381, 1571, 1761
BspCNI	CTCAG	7 cut(s)	360, 823, 1184, 1600, 1763, 1794, 1873
BspEI	TCCGGA	1 cut(s)	650
BspFNI	CGCG	1 cut(s)	1953
BspLI	GGNNCC	6 cut(s)	665, 687, 696, 1248, 1805, 2059
BspMAI	CTGCAG	1 cut(s)	255
BspPI	GGATC	2 cut(s)	298, 1172
BspT104I	TTCGAA	1 cut(s)	1729
BspT107I	GGYRCC	1 cut(s)	1246
BspTI	CTTAAG	2 cut(s)	1024, 1837
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	4 cut(s)	573, 876, 1550, 1908
BsrFI	RCCGGY	1 cut(s)	666
BsrGI	TGTACA	1 cut(s)	1999
BsrI	ACTGG	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	666
BssECI	CCNNGG	9 cut(s)	30, 579, 658, 659, 998, 1339, 1364, 1431, 1588
BssMI	GATC	5 cut(s)	303, 376, 778, 789, 1177
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	4 cut(s)	30, 579, 998, 1339
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	6 cut(s)	308, 398, 660, 1432, 1801, 1929
Bst4CI	ACNGT	6 cut(s)	548, 947, 1159, 1334, 1496, 1823
Bst6I	CTCTTC	3 cut(s)	127, 618, 1287
BstAFI	CTTAAG	2 cut(s)	1024, 1837
BstAUI	TGTACA	1 cut(s)	1999
BstBI	TTCGAA	1 cut(s)	1729
BstC8I	GCNNGC	5 cut(s)	668, 867, 879, 1689, 1759
BstDEI	CTNAG	9 cut(s)	368, 470, 831, 1113, 1171, 1608, 1750, 1781, 1860
BstDSI	CCRYGG	2 cut(s)	30, 1339
BstEII	GGTNACC	1 cut(s)	1426
BstENI	CCTNNNNNAGG	2 cut(s)	134, 834
BstFNI	CGCG	1 cut(s)	1953
BstHHI	GCGC	3 cut(s)	528, 1275, 1516
BstKTI	GATC	5 cut(s)	306, 379, 781, 792, 1180
BstMAI	GTCTC	5 cut(s)	230, 1397, 1568, 1624, 1753
BstMBI	GATC	5 cut(s)	303, 376, 778, 789, 1177
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1511, 1697, 1910
BstNI	CCWGG	6 cut(s)	308, 398, 660, 1432, 1801, 1929
BstNSI	RCATGY	1 cut(s)	1445
BstPI	GGTNACC	1 cut(s)	1426
BstSCI	CCNGG	8 cut(s)	306, 396, 450, 658, 1364, 1430, 1799, 1927
BstSFI	CTRYAG	3 cut(s)	251, 1492, 2092
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	1 cut(s)	1953
BstV1I	GCAGC	3 cut(s)	265, 505, 868
BstV2I	GAAGAC	1 cut(s)	866
BstX2I	RGATCY	3 cut(s)	303, 376, 1177
BstXI	CCANNNNNNTGG	1 cut(s)	1769
BstYI	RGATCY	3 cut(s)	303, 376, 1177
Bsu36I	CCTNAGG	2 cut(s)	831, 1608
BsuI	GTATCC	2 cut(s)	647, 1409
BsuRI	GGCC	6 cut(s)	666, 695, 1003, 1381, 1571, 1761
BtgI	CCRYGG	2 cut(s)	30, 1339
BtgZI	GCGATG	1 cut(s)	269
BtsI	GCAGTG	2 cut(s)	521, 915
BtsIMutI	CAGTG	7 cut(s)	521, 915, 952, 1501, 1666, 1789, 1971
Cac8I	GCNNGC	5 cut(s)	668, 867, 879, 1689, 1759
CaiI	CAGNNNCTG	1 cut(s)	1757
CfoI	GCGC	3 cut(s)	528, 1275, 1516
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	4 cut(s)	664, 686, 694, 2097
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	5 cut(s)	217, 774, 1369, 2000, 2079
CspCI	CAANNNNNGTGG	2 cut(s)	2089, 2124
CviQI	GTAC	5 cut(s)	217, 774, 1369, 2000, 2079
DdeI	CTNAG	9 cut(s)	368, 470, 831, 1113, 1171, 1608, 1750, 1781, 1860
DpnI	GATC	5 cut(s)	305, 378, 780, 791, 1179
DpnII	GATC	5 cut(s)	303, 376, 778, 789, 1177
EaeI	YGGCCR	2 cut(s)	1569, 1759
Eam1104I	CTCTTC	3 cut(s)	127, 618, 1287
EarI	CTCTTC	3 cut(s)	127, 618, 1287
Ecl136II	GAGCTC	3 cut(s)	986, 1834, 1859
Eco130I	CCWWGG	4 cut(s)	30, 579, 998, 1339
Eco24I	GRGCYC	3 cut(s)	988, 1836, 1861
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	686, 2097
Eco53kI	GAGCTC	3 cut(s)	986, 1834, 1859
Eco57I	CTGAAG	4 cut(s)	228, 996, 1062, 1190
Eco81I	CCTNAGG	2 cut(s)	831, 1608
Eco91I	GGTNACC	1 cut(s)	1426
EcoICRI	GAGCTC	3 cut(s)	986, 1834, 1859
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 834
EcoO65I	GGTNACC	1 cut(s)	1426
EcoRII	CCWGG	6 cut(s)	306, 396, 658, 1430, 1799, 1927
EcoT14I	CCWWGG	4 cut(s)	30, 579, 998, 1339
EcoT38I	GRGCYC	3 cut(s)	988, 1836, 1861
ErhI	CCWWGG	4 cut(s)	30, 579, 998, 1339
FalI	AAGNNNNNCTT	4 cut(s)	1007, 1039, 1188, 1220
FaqI	GGGAC	3 cut(s)	396, 584, 699
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	2 cut(s)	778, 789
FblI	GTMKAC	1 cut(s)	1491
Fnu4HI	GCNGC	6 cut(s)	254, 519, 558, 693, 708, 882
FriOI	GRGCYC	3 cut(s)	988, 1836, 1861
Fsp4HI	GCNGC	6 cut(s)	254, 519, 558, 693, 708, 882
FspBI	CTAG	6 cut(s)	159, 374, 612, 921, 1254, 1634
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	3 cut(s)	527, 1274, 1515
GluI	GCNGC	6 cut(s)	254, 519, 558, 693, 708, 882
HaeIII	GGCC	6 cut(s)	666, 695, 1003, 1381, 1571, 1761
HapII	CCGG	6 cut(s)	451, 651, 667, 1366, 1386, 1680
HgaI	GACGC	1 cut(s)	871
HhaI	GCGC	3 cut(s)	528, 1275, 1516
Hin6I	GCGC	3 cut(s)	526, 1273, 1514
HinP1I	GCGC	3 cut(s)	526, 1273, 1514
HincII	GTYRAC	3 cut(s)	27, 52, 1283
HindII	GTYRAC	3 cut(s)	27, 52, 1283
HinfI	GANTC	3 cut(s)	615, 1709, 1773
HpaII	CCGG	6 cut(s)	451, 651, 667, 1366, 1386, 1680
HphI	GGTGA	2 cut(s)	290, 784
Hpy166II	GTNNAC	9 cut(s)	27, 52, 200, 338, 915, 1202, 1283, 1492, 1666
Hpy188I	TCNGA	7 cut(s)	58, 135, 620, 1585, 1592, 1708, 1753
Hpy188III	TCNNGA	5 cut(s)	602, 651, 830, 1052, 1607
Hpy8I	GTNNAC	9 cut(s)	27, 52, 200, 338, 915, 1202, 1283, 1492, 1666
Hpy99I	CGWCG	1 cut(s)	1854
HpyCH4III	ACNGT	6 cut(s)	548, 947, 1159, 1334, 1496, 1823
HpyCH4IV	ACGT	2 cut(s)	45, 1849
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1511, 1697, 1910
HpyF3I	CTNAG	9 cut(s)	368, 470, 831, 1113, 1171, 1608, 1750, 1781, 1860
HpySE526I	ACGT	2 cut(s)	45, 1849
HspAI	GCGC	3 cut(s)	526, 1273, 1514
Kpn2I	TCCGGA	1 cut(s)	650
KroI	GCCGGC	1 cut(s)	666
KroNI	GCCGGC	1 cut(s)	668
Ksp22I	TGATCA	2 cut(s)	778, 789
Kzo9I	GATC	5 cut(s)	303, 376, 778, 789, 1177
LmnI	GCTCC	1 cut(s)	1809
Lsp1109I	GCAGC	3 cut(s)	265, 505, 868
LweI	GCATC	4 cut(s)	69, 719, 1084, 1096
MaeI	CTAG	6 cut(s)	159, 374, 612, 921, 1254, 1634
MaeII	ACGT	2 cut(s)	45, 1849
MaeIII	GTNAC	2 cut(s)	1426, 1964
MalI	GATC	5 cut(s)	305, 378, 780, 791, 1179
MboI	GATC	5 cut(s)	303, 376, 778, 789, 1177
MfeI	CAATTG	3 cut(s)	1311, 1326, 2132
MflI	RGATCY	3 cut(s)	303, 376, 1177
MhlI	GDGCHC	4 cut(s)	917, 988, 1836, 1861
MlsI	TGGCCA	2 cut(s)	1571, 1761
MluNI	TGGCCA	2 cut(s)	1571, 1761
MlyI	GAGTC	2 cut(s)	609, 1782
MmeI	TCCRAC	2 cut(s)	609, 1375
Mox20I	TGGCCA	2 cut(s)	1571, 1761
MroI	TCCGGA	1 cut(s)	650
MroNI	GCCGGC	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	1128
MscI	TGGCCA	2 cut(s)	1571, 1761
MseI	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1083, 1838, 1956
MslI	CAYNNNNRTG	2 cut(s)	345, 1821
Msp20I	TGGCCA	2 cut(s)	1571, 1761
MspA1I	CMGCKG	2 cut(s)	692, 1210
MspCI	CTTAAG	2 cut(s)	1024, 1837
MspI	CCGG	6 cut(s)	451, 651, 667, 1366, 1386, 1680
MspR9I	CCNGG	8 cut(s)	308, 398, 452, 660, 1366, 1432, 1801, 1929
MunI	CAATTG	3 cut(s)	1311, 1326, 2132
MvaI	CCWGG	6 cut(s)	308, 398, 660, 1432, 1801, 1929
MvnI	CGCG	1 cut(s)	1953
MwoI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1511, 1697, 1910
NaeI	GCCGGC	1 cut(s)	668
NciI	CCSGG	2 cut(s)	452, 1366
NcoI	CCATGG	2 cut(s)	30, 1339
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	5 cut(s)	303, 376, 778, 789, 1177
NgoMIV	GCCGGC	1 cut(s)	666
NlaIV	GGNNCC	6 cut(s)	665, 687, 696, 1248, 1805, 2059
NsbI	TGCGCA	1 cut(s)	527
NspI	RCATGY	1 cut(s)	1445
NspV	TTCGAA	1 cut(s)	1729
OliI	CACNNNNGTG	1 cut(s)	1821
PasI	CCCWGGG	1 cut(s)	659
PdiI	GCCGGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	1128
PfeI	GAWTC	1 cut(s)	1709
PflMI	CCANNNNNTGG	2 cut(s)	313, 1800
PfoI	TCCNGGA	2 cut(s)	306, 1927
PkrI	GCNGC	6 cut(s)	255, 520, 559, 694, 709, 883
PleI	GAGTC	2 cut(s)	609, 1781
PpsI	GAGTC	2 cut(s)	609, 1781
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	3 cut(s)	988, 1836, 1861
Psp6I	CCWGG	6 cut(s)	306, 396, 658, 1430, 1799, 1927
PspEI	GGTNACC	1 cut(s)	1426
PspGI	CCWGG	6 cut(s)	306, 396, 658, 1430, 1799, 1927
PspN4I	GGNNCC	6 cut(s)	665, 687, 696, 1248, 1805, 2059
PspPI	GGNCC	4 cut(s)	664, 686, 694, 2097
PsrI	GAACNNNNNNTAC	2 cut(s)	1030, 1062
PstI	CTGCAG	1 cut(s)	255
PstNI	CAGNNNCTG	1 cut(s)	1757
PsuI	RGATCY	3 cut(s)	303, 376, 1177
PvuII	CAGCTG	1 cut(s)	1210
RsaI	GTAC	5 cut(s)	218, 775, 1370, 2001, 2080
RsaNI	GTAC	5 cut(s)	217, 774, 1369, 2000, 2079
RseI	CAYNNNNRTG	2 cut(s)	345, 1821
SacI	GAGCTC	3 cut(s)	988, 1836, 1861
SaqAI	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1083, 1838, 1956
SatI	GCNGC	6 cut(s)	254, 519, 558, 693, 708, 882
Sau3AI	GATC	5 cut(s)	303, 376, 778, 789, 1177
Sau96I	GGNCC	4 cut(s)	664, 686, 694, 2097
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	2 cut(s)	609, 1782
ScrFI	CCNGG	8 cut(s)	308, 398, 452, 660, 1366, 1432, 1801, 1929
SduI	GDGCHC	4 cut(s)	917, 988, 1836, 1861
SfaNI	GCATC	4 cut(s)	69, 719, 1084, 1096
SfcI	CTRYAG	3 cut(s)	251, 1492, 2092
SfuI	TTCGAA	1 cut(s)	1729
SinI	GGWCC	2 cut(s)	686, 2097
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1821
SmlI	CTYRAG	3 cut(s)	1024, 1420, 1837
SmoI	CTYRAG	3 cut(s)	1024, 1420, 1837
SsiI	CCGC	4 cut(s)	557, 692, 707, 1220
SspI	AATATT	1 cut(s)	1476
SspMI	CTAG	6 cut(s)	159, 374, 612, 921, 1254, 1634
SstI	GAGCTC	3 cut(s)	988, 1836, 1861
StyD4I	CCNGG	8 cut(s)	306, 396, 450, 658, 1364, 1430, 1799, 1927
StyI	CCWWGG	4 cut(s)	30, 579, 998, 1339
TaaI	ACNGT	6 cut(s)	548, 947, 1159, 1334, 1496, 1823
TaiI	ACGT	2 cut(s)	48, 1852
TaqI	TCGA	4 cut(s)	603, 894, 1317, 1729
TaqII	GACCGA	1 cut(s)	254
TatI	WGTACW	3 cut(s)	216, 773, 1999
TauI	GCSGC	3 cut(s)	560, 695, 710
TfiI	GAWTC	1 cut(s)	1709
Tru1I	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1083, 1838, 1956
Tru9I	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1083, 1838, 1956
TscAI	CASTG	7 cut(s)	528, 922, 952, 1501, 1666, 1789, 1978
TseI	GCWGC	3 cut(s)	253, 518, 881
TspRI	CASTG	7 cut(s)	528, 922, 952, 1501, 1666, 1789, 1978
Van91I	CCANNNNNTGG	2 cut(s)	313, 1800
Vha464I	CTTAAG	2 cut(s)	1024, 1837
VneI	GTGCAC	1 cut(s)	913
VpaK11BI	GGWCC	2 cut(s)	686, 2097
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	2 cut(s)	134, 834
XapI	RAATTY	6 cut(s)	319, 672, 1621, 1976, 2019, 2025
XceI	RCATGY	1 cut(s)	1445
XmiI	GTMKAC	1 cut(s)	1491
XmnI	GAANNNNTTC	1 cut(s)	1128
XspI	CTAG	6 cut(s)	159, 374, 612, 921, 1254, 1634
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.