Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

10011219 .. 10015264

Gene Structure 4046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0126900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2898 bp

ATGGGTGGCACTGAAATGTCTCATTTCATGCTGTTTCTTGCAATACTTCATTCCCTTCTTGCTGTTGCTTCTGGAGATAATTCGAGAGACTCCAGCCGTCTTCTGAGAATCAAATCAGAACTCGTAGATCCATCAGGAGTTCTGAACAACTGGTCTCCAAGAGCTCATATATGCAGTTGGAATGGCCTTGAATGTTCAAATGATCAGATGCATATTATTAGTCTGAACCTATCTGGATCAGGACTATCAGGTTCCATCCCACATGAGCTTTGGAACCTCACTTCAATCCAAACACTTGATTTGTCATCAAATTTCTTCACCGGCTCACTTCCACCTGAGCTCCGCCAGCTTCAAAATCTTAAAGCACTTCTCCTATTCTCCAATTTTCTCTCCGGTGAGATTCCTGAGGAAATAGGCGCTTTGAAGAACTTGCAAGTTCTAAGAATAGGAGATAACATGATATCAGGTGTGATTCCACCAAGCATTGGCAACTTGACTGACTTGAGAGTGTTGGGGCTTGCCTATTGCCAATTAAATGGAAGCATTCCAGTTGAAATTGGTAACTTGAAGCATCTAATATCTCTTGACTTGCAGAACAATAGTCTCAGTGGCCTCATACCAGAAGAGATTCATGGCTGCGAAGAGCTTGAGGACTTTGCAGCATCAAACAACAAGCTTGAAGGAGACATCCCTTTGATGGGATCACTTAAATCACTGCAAATTCTCAACCTGGCCAACAACAGCCTTTCTGGATCAATTCCTACCGCATTAAGTCAGCTCCACAATTTGAAGTACTTGAATCTGCTTGGAAACAGATTGAGTGGCGCCATTCCTTCGGAGCTTAACCAGTTGGTTCAACTTGAGATGCTTGACTTATCAAGGAACAATCTCTCAGGCAGCATACAACTTCTGATCAGCACACAATTAAAGAATCTTGCAGCTTTGGTTCTGTCTGATAATGCTTTGACAGGTAGCATTCCAACCAACTTCTGCATAAGAGGTTCTTCAAATCTTCGACAACTTCTTCTGGCTCGAAACAAGCTCTCTGGAGAGTTTCCTTTGGCAGTGCTGAGCTGTTCCTCGCTCCAACAGCTAGATCTTTCAGATAATCATTTTGGAGGGGAACTACCTACTTCCCTGGACAAACTAGGGAATCTCACAGATCTTGTGCTCAACAATAACAGCTTCACAGGAACTCTACTTCCTGAAATCGGAAACTTGAGTTCCTTGGAAAATCTGTTTCTGTTTCACAACATGATCACAGGTGGAATTCCGGTGGAGATAGGAAAGCTGCAGAGGCTGAAAACCATCTACCTTTACGACAACCAGATGTCAGGACCGATACCAAGTGAGTTAACCAACTGCTCAAGCTTGACAGCAATTGATTTCTTTGGCAACCGTTTCTCAGGCTCCATCCCCGCCACCATCGGAAAACTCAAGAACCTTTTTTTGCTCCAGCTGAGGCAGAATGACTTGTCTGGTCCTATTCCACCAAGCTTAGGCTACTGCAGAAGCCTTCAGTTGTTGGCCTTAGCTGATAACAAGCTCTCAGGAACCTTGCCACCCACATTCAGATTCATTTCCCAACTAAGCACCATTACTCTTTACAACAACTCCTTTCAAGGCCCTCTTCCTCAATCCCTTTTTCTTCTCAAAAACCTCAAGATCATAAATTTCTCTCACAATCGGTTTAGTGGAACCATCTTCCCTCTCTCTGGTTCAAGTTATCTGACAGCAATGGACTTGACCAACAATAGCTTTTCGGGTTCCATCCCTTCTGGACTTTCCATGTGCAGAAATTTAACCCGTCTCCGCCTTGCACATAATCACCTCACCGGCACCATGCCTTCCGAATTTGGCCAACTCACACAGCTCAACTTTCTTGACTTGTCATTCAACAACCTCACAGATGAAATCCCGCCTCAGTTGTCTTCTTGTAAGAAACTTGAGCATTTCTTAGTTAACAATAACCAATTCACAGGAGCAATACCTCCATGGTTAGGTAGCCTTCAAGAACTAGGAGAACTAGACTTCTCGTCTAACAACTTTCATGGAACAGTACCTGCAGAGCTTGGAAACTGTTCAAAACTACTCAAGCTTTCTCTGCATGACAACAGTCTCTCCAGTATTATCCCAGCGGAGATAGGAAATCTCACTTCTCTCAATGTCCTAAATCTTCAGAGAAACAATTTTTCAGGGTCTATTCCATCGACAATCCAGAACTGCAAGAAGCTCTATGAACTGAGGCTGTCAGAGAACTTGTTGACAGGTTTGATCCCATATGAGCTTGGAGAGTTAACCGAGCTGCAAGTAATCCTGGATCTAAGCACAAACTTGTTCTCCGGTGAAATCCCATCTTCTCTAGGAGATCTAATGAAGTTGGAGAGACTGAACCTCTCTTTCAATCAGCTCCAAGGAAGAGTTCCTGCTTCACTTGGGAAGCTGACCAGTCTTCACATGTTGAACCTGTCAAATAATCATCTTGAGGGCCAAATCCCTTCAACCTTTTCAGGATTCCCACTGAGCTCTTTCTTAGGTAATGATCACAAGCTTTGCGGCCCACCATTAGCATCGTGTAGGGAATCTGAGGCCCAGAATGTAAAGCGCCTTTCACGTACTGCAGCAACTGGTATTACAGTGGCCATAGTGTTAACTTCCACAGCAATATGCTTGGTGATGATTTACATCATGCTGAGGATATGGTGCAAGTGGAGAAAAGTTTTGATTTCAAACTCGGACGCTTCTGGTGGAAAAGAAGAGGAGAAATGGGGATTTGGGAATGAGAAGAAGAGGGTTGGTGAGTACTGGAAAGTGAATTCTGTGGCGCAGGTGCCTTCAGAAACTGCAGAAATGAAGAAACAGAATAATGCATCATTCTACACCACCACCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

965

Amino Acids

105.3

Weight (kDa)

6.2

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 66	1.3e-08	Leucine rich repeat N-terminal domain
LRR_14	PF23598	73 - 149	1.7e-06	Leucine-rich repeat region
LRR_14	PF23598	132 - 200	1.3e-08	Leucine-rich repeat region
LRR_14	PF23598	161 - 261	1.4e-08	Leucine-rich repeat region
LRR_8	PF13855	238 - 297	1.5e-07	Leucine rich repeat
LRR_14	PF23598	337 - 438	2.9e-07	Leucine-rich repeat region
LRR_14	PF23598	569 - 703	2.1e-07	Leucine-rich repeat region
LRR_8	PF13855	576 - 635	1.9e-06	Leucine rich repeat
LRR_8	PF13855	599 - 659	3.7e-06	Leucine rich repeat
LRR_14	PF23598	691 - 827	5e-11	Leucine-rich repeat region
LRR_8	PF13855	772 - 828	7.5e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2818
Acc36I	ACCTGC	2 cut(s)	2071, 2818
AccB1I	GGYRCC	3 cut(s)	824, 1838, 2830
AccB7I	CCANNNNNTGG	1 cut(s)	485
AciI	CCGC	7 cut(s)	343, 765, 1419, 1813, 1919, 2138, 2556
AclWI	GGATC	6 cut(s)	122, 244, 709, 760, 2269, 2328
AcoI	YGGCCR	3 cut(s)	732, 1858, 2640
AcsI	RAATTY	7 cut(s)	310, 720, 1269, 1672, 1798, 1853, 2815
AcuI	CTGAAG	3 cut(s)	1502, 2162, 2820
AcyI	GRCGYC	1 cut(s)	825
AfaI	GTAC	4 cut(s)	794, 2061, 2617, 2804
AfiI	CCNNNNNNNGG	7 cut(s)	485, 697, 698, 1211, 1499, 1715, 2000
AflIII	ACRYGT	1 cut(s)	2457
AhdI	GACNNNNNGTC	1 cut(s)	2035
AjnI	CCWGG	3 cut(s)	729, 1137, 2316
AjuI	GAANNNNNNNTTGG	2 cut(s)	2406, 2438
AloI	GAACNNNNNNTCC	2 cut(s)	1186, 1218
Alw21I	GWGCWC	4 cut(s)	166, 342, 1173, 2528
Alw26I	GTCTC	8 cut(s)	24, 81, 159, 608, 678, 1814, 2123, 2380
AlwI	GGATC	6 cut(s)	122, 244, 709, 760, 2269, 2328
AlwNI	CAGNNNCTG	4 cut(s)	1300, 2063, 2627, 2843
ApeKI	GCWGC	7 cut(s)	636, 659, 897, 938, 1291, 2305, 2621
ApoI	RAATTY	7 cut(s)	310, 720, 1269, 1672, 1798, 1853, 2815
Asp700I	GAANNNNTTC	2 cut(s)	627, 2080
AspLEI	GCGC	4 cut(s)	419, 827, 2607, 2827
AspS9I	GGNCC	6 cut(s)	1337, 1481, 1625, 2488, 2558, 2590
AsuHPI	GGTGA	7 cut(s)	310, 407, 1820, 1825, 2357, 2686, 2810
AvaII	GGWCC	2 cut(s)	1337, 1481
AxyI	CCTNAGG	1 cut(s)	405
BalI	TGGCCA	3 cut(s)	734, 1860, 2642
BanI	GGYRCC	3 cut(s)	824, 1838, 2830
BanII	GRGCYC	3 cut(s)	166, 342, 2528
BbsI	GAAGAC	3 cut(s)	92, 1923, 2444
Bbv12I	GWGCWC	4 cut(s)	166, 342, 1173, 2528
BbvCI	CCTCAGC	2 cut(s)	1460, 2693
BbvI	GCAGC	7 cut(s)	623, 671, 909, 950, 1278, 2292, 2633
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	3 cut(s)	731, 1139, 2318
BclI	TGATCA	4 cut(s)	202, 912, 1257, 2542
BcoDI	GTCTC	8 cut(s)	24, 81, 159, 608, 678, 1814, 2123, 2380
BfaI	CTAG	5 cut(s)	1094, 1148, 2018, 2027, 2363
BfmI	CTRYAG	5 cut(s)	1292, 1507, 2064, 2619, 2844
BfoI	RGCGCY	3 cut(s)	420, 828, 2608
BfuAI	ACCTGC	2 cut(s)	2071, 2818
BglII	AGATCT	3 cut(s)	1096, 1162, 2368
BisI	GCNGC	8 cut(s)	637, 660, 898, 939, 1292, 2306, 2557, 2622
BlpI	GCTNAGC	1 cut(s)	1070
BlsI	GCNGC	8 cut(s)	638, 661, 899, 940, 1293, 2307, 2558, 2623
BmcAI	AGTACT	2 cut(s)	794, 2804
Bme1390I	CCNGG	3 cut(s)	731, 1139, 2318
Bme18I	GGWCC	2 cut(s)	1337, 1481
BmeRI	GACNNNNNGTC	1 cut(s)	2035
BmgT120I	GGNCC	6 cut(s)	1337, 1481, 1625, 2488, 2558, 2590
BmiI	GGNNCC	9 cut(s)	253, 275, 826, 1411, 1555, 1699, 1768, 1840, 2832
BmrFI	CCNGG	3 cut(s)	731, 1139, 2318
BmsI	GCATC	6 cut(s)	198, 580, 671, 855, 2579, 2879
BoxI	GACNNNNGTC	1 cut(s)	2115
BpiI	GAAGAC	3 cut(s)	92, 1923, 2444
BpmI	CTGGAG	5 cut(s)	76, 93, 1068, 1439, 2107
Bpu10I	CCTNAGC	5 cut(s)	336, 1460, 1498, 1531, 2693
Bpu1102I	GCTNAGC	1 cut(s)	1070
BsaAI	YACGTR	1 cut(s)	2615
BsaBI	GATNNNNATC	1 cut(s)	2684
BsaHI	GRCGYC	1 cut(s)	825
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	1137, 1227, 1994, 2413
BsaWI	WCCGGW	3 cut(s)	392, 1273, 2342
BsaXI	ACNNNNNCTCC	8 cut(s)	324, 354, 1598, 1628, 2105, 2135, 2324, 2354
Bsc4I	CCNNNNNNNGG	7 cut(s)	485, 697, 698, 1211, 1499, 1715, 2000
Bse118I	RCCGGY	2 cut(s)	320, 1835
Bse1I	ACTGG	7 cut(s)	155, 548, 847, 2124, 2448, 2632, 2810
Bse21I	CCTNAGG	1 cut(s)	405
Bse3DI	GCAATG	1 cut(s)	1743
Bse8I	GATNNNNATC	1 cut(s)	2684
BseBI	CCWGG	3 cut(s)	731, 1139, 2318
BseDI	CCNNGG	4 cut(s)	1137, 1227, 1994, 2413
BseGI	GGATG	4 cut(s)	255, 687, 1413, 1770
BseJI	GATNNNNATC	1 cut(s)	2684
BseLI	CCNNNNNNNGG	7 cut(s)	485, 697, 698, 1211, 1499, 1715, 2000
BseMI	GCAATG	1 cut(s)	1743
BseNI	ACTGG	7 cut(s)	155, 548, 847, 2124, 2448, 2632, 2810
BseRI	GAGGAG	1 cut(s)	2774
BseXI	GCAGC	7 cut(s)	623, 671, 909, 950, 1278, 2292, 2633
BseYI	CCCAGC	1 cut(s)	2134
BsgI	GTGCAG	1 cut(s)	1813
BshNI	GGYRCC	3 cut(s)	824, 1838, 2830
BsiHKAI	GWGCWC	4 cut(s)	166, 342, 1173, 2528
BsiSI	CCGG	5 cut(s)	321, 393, 1274, 1836, 2343
BslI	CCNNNNNNNGG	7 cut(s)	485, 697, 698, 1211, 1499, 1715, 2000
BsmAI	GTCTC	8 cut(s)	24, 81, 159, 608, 678, 1814, 2123, 2380
BsmBI	CGTCTC	1 cut(s)	1814
BsmI	GAATGC	2 cut(s)	543, 975
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	4 cut(s)	166, 342, 1173, 2528
Bsp1720I	GCTNAGC	1 cut(s)	1070
Bsp19I	CCATGG	1 cut(s)	1994
BspACI	CCGC	7 cut(s)	343, 765, 1419, 1813, 1919, 2138, 2556
BspLI	GGNNCC	9 cut(s)	253, 275, 826, 1411, 1555, 1699, 1768, 1840, 2832
BspMAI	CTGCAG	5 cut(s)	1296, 1511, 2068, 2623, 2848
BspMI	ACCTGC	2 cut(s)	2071, 2818
BspPI	GGATC	6 cut(s)	122, 244, 709, 760, 2269, 2328
BspQI	GCTCTTC	1 cut(s)	636
BspT107I	GGYRCC	3 cut(s)	824, 1838, 2830
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	1743
BsrFI	RCCGGY	2 cut(s)	320, 1835
BsrI	ACTGG	7 cut(s)	155, 548, 847, 2124, 2448, 2632, 2810
BssAI	RCCGGY	2 cut(s)	320, 1835
BssECI	CCNNGG	4 cut(s)	1137, 1227, 1994, 2413
BssNI	GRCGYC	1 cut(s)	825
BssT1I	CCWWGG	3 cut(s)	1227, 1994, 2413
Bst2UI	CCWGG	3 cut(s)	731, 1139, 2318
Bst4CI	ACNGT	5 cut(s)	1400, 2059, 2081, 2117, 2638
Bst6I	CTCTTC	6 cut(s)	618, 636, 1635, 2413, 2751, 2783
BstACI	GRCGYC	1 cut(s)	825
BstBAI	YACGTR	1 cut(s)	2615
BstC8I	GCNNGC	2 cut(s)	347, 519
BstDSI	CCRYGG	1 cut(s)	1994
BstF5I	GGATG	4 cut(s)	255, 687, 1413, 1770
BstH2I	RGCGCY	3 cut(s)	420, 828, 2608
BstHHI	GCGC	4 cut(s)	419, 827, 2607, 2827
BstMAI	GTCTC	8 cut(s)	24, 81, 159, 608, 678, 1814, 2123, 2380
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 1090, 1297, 2104
BstNI	CCWGG	3 cut(s)	731, 1139, 2318
BstNSI	RCATGY	1 cut(s)	2461
BstPAI	GACNNNNGTC	1 cut(s)	2115
BstSCI	CCNGG	3 cut(s)	729, 1137, 2316
BstSFI	CTRYAG	5 cut(s)	1292, 1507, 2064, 2619, 2844
BstV1I	GCAGC	7 cut(s)	623, 671, 909, 950, 1278, 2292, 2633
BstV2I	GAAGAC	3 cut(s)	92, 1923, 2444
BstX2I	RGATCY	5 cut(s)	127, 1096, 1162, 2320, 2368
BstXI	CCANNNNNNTGG	1 cut(s)	536
BstYI	RGATCY	5 cut(s)	127, 1096, 1162, 2320, 2368
Bsu36I	CCTNAGG	1 cut(s)	405
BtgI	CCRYGG	1 cut(s)	1994
BtsCI	GGATG	4 cut(s)	255, 687, 1413, 1770
BtsI	GCAGTG	2 cut(s)	713, 1071
BtsIMutI	CAGTG	6 cut(s)	9, 613, 713, 1071, 2519, 2643
BveI	ACCTGC	2 cut(s)	2071, 2818
Cac8I	GCNNGC	2 cut(s)	347, 519
CaiI	CAGNNNCTG	4 cut(s)	1300, 2063, 2627, 2843
CfoI	GCGC	4 cut(s)	419, 827, 2607, 2827
Cfr10I	RCCGGY	2 cut(s)	320, 1835
Cfr13I	GGNCC	6 cut(s)	1337, 1481, 1625, 2488, 2558, 2590
CseI	GACGC	1 cut(s)	2747
Csp6I	GTAC	4 cut(s)	793, 2060, 2616, 2803
CviQI	GTAC	4 cut(s)	793, 2060, 2616, 2803
DinI	GGCGCC	1 cut(s)	826
DriI	GACNNNNNGTC	1 cut(s)	2035
EaeI	YGGCCR	3 cut(s)	732, 1858, 2640
Eam1104I	CTCTTC	6 cut(s)	618, 636, 1635, 2413, 2751, 2783
Eam1105I	GACNNNNNGTC	1 cut(s)	2035
EarI	CTCTTC	6 cut(s)	618, 636, 1635, 2413, 2751, 2783
EciI	GGCGGA	2 cut(s)	332, 1802
Ecl136II	GAGCTC	3 cut(s)	164, 340, 2526
Eco130I	CCWWGG	3 cut(s)	1227, 1994, 2413
Eco24I	GRGCYC	3 cut(s)	166, 342, 2528
Eco31I	GGTCTC	1 cut(s)	159
Eco32I	GATATC	1 cut(s)	462
Eco47I	GGWCC	2 cut(s)	1337, 1481
Eco53kI	GAGCTC	3 cut(s)	164, 340, 2526
Eco57I	CTGAAG	3 cut(s)	1502, 2162, 2820
Eco81I	CCTNAGG	1 cut(s)	405
EcoICRI	GAGCTC	3 cut(s)	164, 340, 2526
EcoO109I	RGGNCCY	1 cut(s)	1625
EcoRI	GAATTC	2 cut(s)	1269, 2815
EcoRII	CCWGG	3 cut(s)	729, 1137, 2316
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	3 cut(s)	1227, 1994, 2413
EcoT22I	ATGCAT	2 cut(s)	213, 2872
EcoT38I	GRGCYC	3 cut(s)	166, 342, 2528
EgeI	GGCGCC	1 cut(s)	826
EheI	GGCGCC	1 cut(s)	826
ErhI	CCWWGG	3 cut(s)	1227, 1994, 2413
Esp3I	CGTCTC	1 cut(s)	1814
FalI	AAGNNNNNCTT	4 cut(s)	988, 1020, 1614, 1646
FauI	CCCGC	2 cut(s)	1426, 1926
FauNDI	CATATG	1 cut(s)	2281
FbaI	TGATCA	4 cut(s)	202, 912, 1257, 2542
Fnu4HI	GCNGC	8 cut(s)	637, 660, 898, 939, 1292, 2306, 2557, 2622
FokI	GGATG	4 cut(s)	242, 674, 1400, 1757
FriOI	GRGCYC	3 cut(s)	166, 342, 2528
Fsp4HI	GCNGC	8 cut(s)	637, 660, 898, 939, 1292, 2306, 2557, 2622
FspBI	CTAG	5 cut(s)	1094, 1148, 2018, 2027, 2363
GlaI	GCGC	4 cut(s)	418, 826, 2606, 2826
GluI	GCNGC	8 cut(s)	637, 660, 898, 939, 1292, 2306, 2557, 2622
GsaI	CCCAGC	1 cut(s)	2138
GsuI	CTGGAG	5 cut(s)	76, 93, 1068, 1439, 2107
HaeII	RGCGCY	3 cut(s)	420, 828, 2608
HapII	CCGG	5 cut(s)	321, 393, 1274, 1836, 2343
HgaI	GACGC	1 cut(s)	2747
HhaI	GCGC	4 cut(s)	419, 827, 2607, 2827
Hin1I	GRCGYC	1 cut(s)	825
Hin6I	GCGC	4 cut(s)	417, 825, 2605, 2825
HinP1I	GCGC	4 cut(s)	417, 825, 2605, 2825
HincII	GTYRAC	5 cut(s)	1356, 1963, 2265, 2298, 2652
HindII	GTYRAC	5 cut(s)	1356, 1963, 2265, 2298, 2652
HindIII	AAGCTT	5 cut(s)	674, 1369, 1495, 2096, 2549
HpaI	GTTAAC	4 cut(s)	1356, 1963, 2298, 2652
HpaII	CCGG	5 cut(s)	321, 393, 1274, 1836, 2343
HphI	GGTGA	7 cut(s)	310, 407, 1820, 1825, 2357, 2686, 2810
Hpy166II	GTNNAC	5 cut(s)	1356, 1963, 2265, 2298, 2652
Hpy8I	GTNNAC	5 cut(s)	1356, 1963, 2265, 2298, 2652
HpyAV	CCTTC	9 cut(s)	65, 674, 843, 1526, 1785, 1857, 2018, 2508, 2844
HpyCH4III	ACNGT	5 cut(s)	1400, 2059, 2081, 2117, 2638
HpyCH4IV	ACGT	1 cut(s)	2614
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 1090, 1297, 2104
HpySE526I	ACGT	1 cut(s)	2614
Hsp92I	GRCGYC	1 cut(s)	825
HspAI	GCGC	4 cut(s)	417, 825, 2605, 2825
KasI	GGCGCC	1 cut(s)	824
Ksp22I	TGATCA	4 cut(s)	202, 912, 1257, 2542
KspAI	GTTAAC	4 cut(s)	1356, 1963, 2298, 2652
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	8 cut(s)	345, 783, 838, 1089, 1415, 1458, 1982, 2415
Lsp1109I	GCAGC	7 cut(s)	623, 671, 909, 950, 1278, 2292, 2633
LweI	GCATC	6 cut(s)	198, 580, 671, 855, 2579, 2879
MaeI	CTAG	5 cut(s)	1094, 1148, 2018, 2027, 2363
MaeII	ACGT	1 cut(s)	2614
MaeIII	GTNAC	1 cut(s)	560
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	5 cut(s)	127, 1096, 1162, 2320, 2368
MhlI	GDGCHC	4 cut(s)	166, 342, 1173, 2528
MlsI	TGGCCA	3 cut(s)	734, 1860, 2642
MluNI	TGGCCA	3 cut(s)	734, 1860, 2642
Mly113I	GGCGCC	1 cut(s)	825
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	4 cut(s)	158, 1004, 1111, 2361
Mox20I	TGGCCA	3 cut(s)	734, 1860, 2642
Mph1103I	ATGCAT	2 cut(s)	213, 2872
MroXI	GAANNNNTTC	2 cut(s)	627, 2080
MscI	TGGCCA	3 cut(s)	734, 1860, 2642
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	3 cut(s)	734, 1860, 2642
MspA1I	CMGCKG	2 cut(s)	1459, 2138
MspI	CCGG	5 cut(s)	321, 393, 1274, 1836, 2343
MspR9I	CCNGG	3 cut(s)	731, 1139, 2318
MunI	CAATTG	1 cut(s)	1380
Mva1269I	GAATGC	2 cut(s)	543, 975
MvaI	CCWGG	3 cut(s)	731, 1139, 2318
MwoI	GCNNNNNNNGC	4 cut(s)	346, 1090, 1297, 2104
NarI	GGCGCC	1 cut(s)	825
NcoI	CCATGG	1 cut(s)	1994
NdeI	CATATG	1 cut(s)	2281
NlaIV	GGNNCC	9 cut(s)	253, 275, 826, 1411, 1555, 1699, 1768, 1840, 2832
NsiI	ATGCAT	2 cut(s)	213, 2872
NspI	RCATGY	1 cut(s)	2461
PaqCI	CACCTGC	1 cut(s)	2818
PciI	ACATGT	1 cut(s)	2457
PciSI	GCTCTTC	1 cut(s)	636
PctI	GAATGC	2 cut(s)	543, 975
PdmI	GAANNNNTTC	2 cut(s)	627, 2080
PflMI	CCANNNNNTGG	1 cut(s)	485
PfoI	TCCNGGA	1 cut(s)	2316
PkrI	GCNGC	8 cut(s)	638, 661, 899, 940, 1293, 2307, 2558, 2623
PleI	GAGTC	1 cut(s)	83
PluTI	GGCGCC	1 cut(s)	828
PpsI	GAGTC	1 cut(s)	83
Ppu21I	YACGTR	1 cut(s)	2615
PscI	ACATGT	1 cut(s)	2457
PshAI	GACNNNNGTC	1 cut(s)	2115
Psp124BI	GAGCTC	3 cut(s)	166, 342, 2528
Psp6I	CCWGG	3 cut(s)	729, 1137, 2316
PspFI	CCCAGC	1 cut(s)	2134
PspGI	CCWGG	3 cut(s)	729, 1137, 2316
PspN4I	GGNNCC	9 cut(s)	253, 275, 826, 1411, 1555, 1699, 1768, 1840, 2832
PspPI	GGNCC	6 cut(s)	1337, 1481, 1625, 2488, 2558, 2590
PstI	CTGCAG	5 cut(s)	1296, 1511, 2068, 2623, 2848
PstNI	CAGNNNCTG	4 cut(s)	1300, 2063, 2627, 2843
PsuI	RGATCY	5 cut(s)	127, 1096, 1162, 2320, 2368
PvuII	CAGCTG	1 cut(s)	1459
RsaI	GTAC	4 cut(s)	794, 2061, 2617, 2804
RsaNI	GTAC	4 cut(s)	793, 2060, 2616, 2803
RseI	CAYNNNNRTG	1 cut(s)	14
SacI	GAGCTC	3 cut(s)	166, 342, 2528
SapI	GCTCTTC	1 cut(s)	636
SatI	GCNGC	8 cut(s)	637, 660, 898, 939, 1292, 2306, 2557, 2622
Sau96I	GGNCC	6 cut(s)	1337, 1481, 1625, 2488, 2558, 2590
ScaI	AGTACT	2 cut(s)	794, 2804
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	731, 1139, 2318
SduI	GDGCHC	4 cut(s)	166, 342, 1173, 2528
SfaNI	GCATC	6 cut(s)	198, 580, 671, 855, 2579, 2879
SfcI	CTRYAG	5 cut(s)	1292, 1507, 2064, 2619, 2844
SfoI	GGCGCC	1 cut(s)	826
SinI	GGWCC	2 cut(s)	1337, 1481
SmiMI	CAYNNNNRTG	1 cut(s)	14
SsiI	CCGC	7 cut(s)	343, 765, 1419, 1813, 1919, 2138, 2556
SspDI	GGCGCC	1 cut(s)	824
SspMI	CTAG	5 cut(s)	1094, 1148, 2018, 2027, 2363
SstI	GAGCTC	3 cut(s)	166, 342, 2528
StyD4I	CCNGG	3 cut(s)	729, 1137, 2316
StyI	CCWWGG	3 cut(s)	1227, 1994, 2413
TaaI	ACNGT	5 cut(s)	1400, 2059, 2081, 2117, 2638
TaiI	ACGT	1 cut(s)	2617
TaqI	TCGA	4 cut(s)	83, 1015, 1033, 2210
TaqII	GACCGA	1 cut(s)	1354
TatI	WGTACW	2 cut(s)	792, 2802
TauI	GCSGC	1 cut(s)	2559
TscAI	CASTG	6 cut(s)	16, 613, 720, 1071, 2526, 2643
TseI	GCWGC	7 cut(s)	636, 659, 897, 938, 1291, 2305, 2621
TspDTI	ATGAA	9 cut(s)	16, 38, 620, 1567, 1926, 2039, 2253, 2390, 2867
TspRI	CASTG	6 cut(s)	16, 613, 720, 1071, 2526, 2643
Van91I	CCANNNNNTGG	1 cut(s)	485
VpaK11BI	GGWCC	2 cut(s)	1337, 1481
XapI	RAATTY	7 cut(s)	310, 720, 1269, 1672, 1798, 1853, 2815
XceI	RCATGY	1 cut(s)	2461
XcmI	CCANNNNNNNNNTGG	1 cut(s)	267
XmnI	GAANNNNTTC	2 cut(s)	627, 2080
XspI	CTAG	5 cut(s)	1094, 1148, 2018, 2027, 2363
ZrmI	AGTACT	2 cut(s)	794, 2804
Zsp2I	ATGCAT	2 cut(s)	213, 2872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.