Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

10002480 .. 10005529

Gene Structure 3050 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0126700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCATTGGTTACCCATCAAATGCAGGGTTCGTTTGTGACATATCCGTCCAGGCCTTTGTCATGGAGCAAGGGGATGAAGTTGAAGCGGTGTCTAACAACACTTCACATTGTTGGGAGAACAGAGAGTTGCTCTATTATAAAGCACAATATTTGTTTCAGTGTAGGGGCTTCTCCCATGCGTGGACCAAAACTTAAACCATTGAGAGTTTCAGCCTTCAAGGGCAATGCCCAGAATGATAAATCTGGAGGTAGAAAAGGTGGATCAAAGCTTCCTAAGAATTCAGTCAAACTAAAAGAGAATGAGGATACCAAAGCGGGATCTCCCCAGGCAAATGATATCCCTATTTCCTATGCCTCTGAAGCAAATGAGAGTATTGCATCTTCCCCTGCCATACATAATCTGTTTAAGAAATGGTTGAGAATGCTCCGAACGCATTCATCAGGTGAAGTAGTAGATGGGATTTTGGGAGAAGAACCTCCTCAAAAGGTGATATCAGAAACTGAGCATGAGACTCAAAACGAGGAGAGAGATGGTATTCTAAGGATGGTTTGGTGCAGTTTTCTCAGTCTAAATGCTACAATAAAAATACCCTTGCTTATCTTCATCCCCTCGTACCTGGCAGTGAATATACTTTATGGCGCCGAAGTTTCAAAGGAGTTAACTCCTTTGTGGGTTCTGGGACCCTTCATTGCAGCTCTCTACATCAAGATGCTTCAGTGGTTGTGTGCGCTCTATGTTTTCAGCTTTAAGCAGACTGTTAAAGTAATCAAGAACTTACCCACTTATTACCTGGTGGCGTATAGATACATTTTTCATGGGAAGCTTAAAGAGGATGTATATGCTCGTTTCTGGCAACCTGTAGTTGACATTAAGAATTTAGATTACAAGAAACTGTCCAGAAGAAAGCTGAAAGTATTACAAGAGTTAATAGTGGAGAAGTACCTTGATTTTGTGGAATCAATATGGCCATATTATTGCAGAGCAATCAGATTCTTAAAGAGGGCTAATCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

339

Amino Acids

38.66

Weight (kDa)

9.67

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	641
AciI	CCGC	2 cut(s)	88, 317
AclWI	GGATC	2 cut(s)	271, 328
AcoI	YGGCCR	1 cut(s)	968
AcsI	RAATTY	2 cut(s)	280, 877
AcuI	CTGAAG	2 cut(s)	381, 701
AcyI	GRCGYC	1 cut(s)	642
AfaI	GTAC	2 cut(s)	617, 944
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	3 cut(s)	85, 220, 654
AjnI	CCWGG	4 cut(s)	50, 327, 618, 792
AluBI	AGCT	5 cut(s)	271, 698, 747, 826, 910
AluI	AGCT	5 cut(s)	271, 698, 747, 826, 910
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	271, 328
AlwNI	CAGNNNCTG	1 cut(s)	503
AoxI	GGCC	2 cut(s)	53, 968
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	2 cut(s)	280, 877
Asp700I	GAANNNNTTC	1 cut(s)	436
AspLEI	GCGC	2 cut(s)	644, 733
AspS9I	GGNCC	2 cut(s)	185, 683
AsuHPI	GGTGA	2 cut(s)	458, 502
AvaII	GGWCC	2 cut(s)	185, 683
BalI	TGGCCA	1 cut(s)	970
BanI	GGYRCC	1 cut(s)	641
BarI	GAAGNNNNNNTAC	2 cut(s)	367, 399
BbvI	GCAGC	1 cut(s)	707
BccI	CCATC	4 cut(s)	24, 452, 527, 541
BciT130I	CCWGG	4 cut(s)	52, 329, 620, 794
BciVI	GTATCC	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	301
BisI	GCNGC	1 cut(s)	696
BlsI	GCNGC	1 cut(s)	697
Bme1390I	CCNGG	4 cut(s)	52, 329, 620, 794
Bme18I	GGWCC	2 cut(s)	185, 683
BmgT120I	GGNCC	2 cut(s)	185, 683
BmiI	GGNNCC	3 cut(s)	643, 684, 685
BmrFI	CCNGG	4 cut(s)	52, 329, 620, 794
BmsI	GCATC	2 cut(s)	389, 702
BplI	GAGNNNNNCTC	2 cut(s)	116, 148
BpmI	CTGGAG	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	642
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse3DI	GCAATG	2 cut(s)	232, 690
BseBI	CCWGG	4 cut(s)	52, 329, 620, 794
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	4 cut(s)	81, 552, 606, 841
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMI	GCAATG	2 cut(s)	232, 690
BseMII	CTCAG	2 cut(s)	495, 580
BseRI	GAGGAG	2 cut(s)	471, 539
BseXI	GCAGC	1 cut(s)	707
BsgI	GTGCAG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	55, 970
BshNI	GGYRCC	1 cut(s)	641
BslFI	GGGAC	1 cut(s)	696
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	1 cut(s)	696
BsmI	GAATGC	2 cut(s)	429, 436
BsnI	GGCC	2 cut(s)	55, 970
Bsp143I	GATC	2 cut(s)	263, 320
BspACI	CCGC	2 cut(s)	88, 317
BspANI	GGCC	2 cut(s)	55, 970
BspCNI	CTCAG	2 cut(s)	496, 579
BspLI	GGNNCC	3 cut(s)	643, 684, 685
BspPI	GGATC	2 cut(s)	271, 328
BspT107I	GGYRCC	1 cut(s)	641
BsrDI	GCAATG	2 cut(s)	232, 690
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	2 cut(s)	263, 320
BssNI	GRCGYC	1 cut(s)	642
Bst2UI	CCWGG	4 cut(s)	52, 329, 620, 794
Bst4CI	ACNGT	2 cut(s)	760, 897
BstACI	GRCGYC	1 cut(s)	642
BstDEI	CTNAG	4 cut(s)	276, 504, 542, 566
BstEII	GGTNACC	1 cut(s)	10
BstF5I	GGATG	4 cut(s)	81, 552, 606, 841
BstH2I	RGCGCY	1 cut(s)	645
BstHHI	GCGC	2 cut(s)	644, 733
BstKTI	GATC	2 cut(s)	266, 323
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	2 cut(s)	263, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 433
BstNI	CCWGG	4 cut(s)	52, 329, 620, 794
BstPI	GGTNACC	1 cut(s)	10
BstSCI	CCNGG	4 cut(s)	50, 327, 618, 792
BstSFI	CTRYAG	1 cut(s)	861
BstV1I	GCAGC	1 cut(s)	707
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuI	GTATCC	1 cut(s)	301
BsuRI	GGCC	2 cut(s)	55, 970
BtsCI	GGATG	4 cut(s)	81, 552, 606, 841
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	166, 630, 725
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	2 cut(s)	644, 733
Cfr13I	GGNCC	2 cut(s)	185, 683
CsiI	ACCWGGT	1 cut(s)	792
Csp6I	GTAC	2 cut(s)	616, 943
CviAII	CATG	4 cut(s)	63, 178, 509, 818
CviQI	GTAC	2 cut(s)	616, 943
DdeI	CTNAG	4 cut(s)	276, 504, 542, 566
DinI	GGCGCC	1 cut(s)	643
DpnI	GATC	2 cut(s)	265, 322
DpnII	GATC	2 cut(s)	263, 320
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	968
Eco147I	AGGCCT	1 cut(s)	55
Eco32I	GATATC	2 cut(s)	340, 495
Eco47I	GGWCC	2 cut(s)	185, 683
Eco57I	CTGAAG	2 cut(s)	381, 701
Eco91I	GGTNACC	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	683
EcoO65I	GGTNACC	1 cut(s)	10
EcoRI	GAATTC	1 cut(s)	280
EcoRII	CCWGG	4 cut(s)	50, 327, 618, 792
EcoRV	GATATC	2 cut(s)	340, 495
EgeI	GGCGCC	1 cut(s)	643
EheI	GGCGCC	1 cut(s)	643
FaeI	CATG	4 cut(s)	66, 181, 512, 821
FaqI	GGGAC	1 cut(s)	696
FatI	CATG	4 cut(s)	62, 177, 508, 817
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	696
FokI	GGATG	4 cut(s)	88, 559, 593, 848
Fsp4HI	GCNGC	1 cut(s)	696
GlaI	GCGC	2 cut(s)	643, 732
GluI	GCNGC	1 cut(s)	696
GsuI	CTGGAG	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	645
HaeIII	GGCC	2 cut(s)	55, 970
HhaI	GCGC	2 cut(s)	644, 733
Hin1I	GRCGYC	1 cut(s)	642
Hin1II	CATG	4 cut(s)	66, 181, 512, 821
Hin6I	GCGC	2 cut(s)	642, 731
HinP1I	GCGC	2 cut(s)	642, 731
HincII	GTYRAC	2 cut(s)	663, 868
HindII	GTYRAC	2 cut(s)	663, 868
HindIII	AAGCTT	2 cut(s)	269, 824
HinfI	GANTC	3 cut(s)	514, 959, 993
HpaI	GTTAAC	1 cut(s)	663
HphI	GGTGA	2 cut(s)	458, 502
Hpy166II	GTNNAC	3 cut(s)	185, 663, 868
Hpy188I	TCNGA	4 cut(s)	361, 431, 499, 992
Hpy188III	TCNNGA	4 cut(s)	246, 709, 772, 900
Hpy8I	GTNNAC	3 cut(s)	185, 663, 868
HpyAV	CCTTC	2 cut(s)	226, 697
HpyCH4III	ACNGT	2 cut(s)	760, 897
HpyCH4V	TGCA	5 cut(s)	25, 380, 558, 695, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 433
HpyF3I	CTNAG	4 cut(s)	276, 504, 542, 566
Hsp92I	GRCGYC	1 cut(s)	642
Hsp92II	CATG	4 cut(s)	66, 181, 512, 821
HspAI	GCGC	2 cut(s)	642, 731
KasI	GGCGCC	1 cut(s)	641
KflI	GGGWCCC	1 cut(s)	683
KspAI	GTTAAC	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	263, 320
LmnI	GCTCC	2 cut(s)	66, 432
Lsp1109I	GCAGC	1 cut(s)	707
LweI	GCATC	2 cut(s)	389, 702
MabI	ACCWGGT	1 cut(s)	792
MaeIII	GTNAC	2 cut(s)	10, 37
MalI	GATC	2 cut(s)	265, 322
MboI	GATC	2 cut(s)	263, 320
MboII	GAAGA	4 cut(s)	375, 485, 595, 915
MflI	RGATCY	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	970
MluCI	AATT	2 cut(s)	280, 877
MluNI	TGGCCA	1 cut(s)	970
Mly113I	GGCGCC	1 cut(s)	642
MlyI	GAGTC	1 cut(s)	508
MnlI	CCTC	9 cut(s)	242, 298, 367, 489, 492, 517, 622, 826, 996
Mox20I	TGGCCA	1 cut(s)	970
MroXI	GAANNNNTTC	1 cut(s)	436
MscI	TGGCCA	1 cut(s)	970
MseI	TTAA	9 cut(s)	195, 408, 662, 750, 762, 828, 873, 929, 998
MslI	CAYNNNNRTG	1 cut(s)	710
Msp20I	TGGCCA	1 cut(s)	970
MspR9I	CCNGG	4 cut(s)	52, 329, 620, 794
Mva1269I	GAATGC	2 cut(s)	429, 436
MvaI	CCWGG	4 cut(s)	52, 329, 620, 794
MwoI	GCNNNNNNNGC	2 cut(s)	362, 433
NarI	GGCGCC	1 cut(s)	642
NdeII	GATC	2 cut(s)	263, 320
NlaIII	CATG	4 cut(s)	66, 181, 512, 821
NlaIV	GGNNCC	3 cut(s)	643, 684, 685
NmuCI	GTSAC	1 cut(s)	37
PceI	AGGCCT	1 cut(s)	55
PctI	GAATGC	2 cut(s)	429, 436
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	959, 993
PkrI	GCNGC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	508
PluTI	GGCGCC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	508
PpuMI	RGGWCCY	1 cut(s)	683
PsiI	TTATAA	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	683
Psp6I	CCWGG	4 cut(s)	50, 327, 618, 792
PspEI	GGTNACC	1 cut(s)	10
PspGI	CCWGG	4 cut(s)	50, 327, 618, 792
PspN4I	GGNNCC	3 cut(s)	643, 684, 685
PspPI	GGNCC	2 cut(s)	185, 683
PspPPI	RGGWCCY	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	2 cut(s)	617, 944
RsaNI	GTAC	2 cut(s)	616, 943
RseI	CAYNNNNRTG	1 cut(s)	710
SaqAI	TTAA	9 cut(s)	195, 408, 662, 750, 762, 828, 873, 929, 998
SatI	GCNGC	1 cut(s)	696
Sau3AI	GATC	2 cut(s)	263, 320
Sau96I	GGNCC	2 cut(s)	185, 683
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	4 cut(s)	52, 329, 620, 794
SexAI	ACCWGGT	1 cut(s)	792
SfaNI	GCATC	2 cut(s)	389, 702
SfcI	CTRYAG	1 cut(s)	861
SfoI	GGCGCC	1 cut(s)	643
SinI	GGWCC	2 cut(s)	185, 683
SmiMI	CAYNNNNRTG	1 cut(s)	710
Sse9I	AATT	2 cut(s)	280, 877
SseBI	AGGCCT	1 cut(s)	55
SsiI	CCGC	2 cut(s)	88, 317
SspDI	GGCGCC	1 cut(s)	641
SspI	AATATT	1 cut(s)	151
StuI	AGGCCT	1 cut(s)	55
StyD4I	CCNGG	4 cut(s)	50, 327, 618, 792
TaaI	ACNGT	2 cut(s)	760, 897
TasI	AATT	2 cut(s)	280, 877
TfiI	GAWTC	2 cut(s)	959, 993
Tru1I	TTAA	9 cut(s)	195, 408, 662, 750, 762, 828, 873, 929, 998
Tru9I	TTAA	9 cut(s)	195, 408, 662, 750, 762, 828, 873, 929, 998
TscAI	CASTG	3 cut(s)	166, 630, 725
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	5 cut(s)	92, 429, 595, 679, 806
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	3 cut(s)	166, 630, 725
VpaK11BI	GGWCC	2 cut(s)	185, 683
XapI	RAATTY	2 cut(s)	280, 877
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmnI	GAANNNNTTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.