Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

38213572 .. 38216270

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1280500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGCCGGCATCCAGTTTGGATTTGGATATGAATATCTATGCAAGGCATTTCCAAGAGTACCCGATGACTTCTTGTGCGGAAATGATTCACATGCCTCTGTTGCCACCACACGTACCTTCTCCCTACCCTGTTCCTGCTGGGAGTTGGGGCGGTGTCTTATCAGATGACGAAAGGTCACTTGCAGTAGAGCTTGCAGCATCCTCTGCTGCCGAACTTATTAAGATGTGCCAGACTGGTGAGCCTCTTTGGATCCGGAACAGTGAAAACGGGAAGGAAGTGCTTAATGTTGAAGAACATGCCCGCATATTCCCACTACGGCTTTTGAATCTCAAGCAGCAGCCAAGTGATCAGTGCAGGACAGAAGCTACTCGCGATAGTGCTGTGGTTATCATGAATGGCATTAATCTTGTAGATGCCTTCCTTGACGCTAATAAGTGGATGGAATTATTTCCTTCTATAGTTTCTAGAGCTAAAACTGTTCAAGTTATTTCAGCAGATCCTTCGGGTCAAGCAAACGGTTCCCTTCAGCTGATGTATGCGGAATTGCAAGTTGTTTCTCCTCTGGTGCCAACCGGAGAAGCTTATTTTCTACGTTATTGTCAACAAAATGAAGAGGAGGGAAGCTGGGCAATTGTTGATTTTCCCACAGATAGCTTCCATGACAAACTTCAATCATCTTTTCCCAGGTACAAGAGATGGCCATCCGGCTGTCTTATCCAAGATATGCCCAATGGATACTCAAGGGTTACATGGATAGAACATGCAGAAATAGAGGAGAAGTCTGTCCATCAAATATTCAGTCACTATGTCTACAAAGGGATGGCATTTGGAGCGCAACGATGGCTTGCAGTCTTACAAAGGCAATTGATACCTTCACCTGAAGCACGCAAGAACATGATGAAATTGGCTCAGAGAATGTTAAGAACAGTTTGTGTAAACATGAGCACCTCCAATGGGCTGTCATGGACGGATCTATCTGATTCCCCAGATGACACAGTTCGAATAACCACAAGGAAAGTCACAGACCCTGGTCAACCCATTGGGGTCATTCTCACTGCTGTTTCCACCACTTGGCTCCCTTACTCACATTACTGTGTCTTCGAACTCCTACGGGAGGAACGTCGCAGAGCTCAGGTATCGAGCAACTCATCGCAGAACGCAGAGCTAATGCTACAAGAGAGCTGCACCGACGAGTCAGGCAGCCTGGTGGTGTATGCAACCATGGATGTTGATGGCATCCAGCTAGCAATGAGCGGAGAGGACCCATCCTGCATTCCCCTCCTTCTTCTAGGCTTTGTAATCGTCCCAGTGCTGCCTATGCAATCTAGTACTAGCACTGCAGCCGATCATGGAAGCTCATCGCCAGATCAGAATCATGAAAGCAGCATCATGAACACGGGTTGTTTGCTGACTGTGGGACTCCAAGTTCTTGCCAGCACAAGCCCATCTGCCAAACTCAACCTCTCCAGTGTCACCGCGATTAACAACCATCTGTGCAACTCGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

503

Amino Acids

55.49

Weight (kDa)

5.1

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	64 - 288	5e-39	START domain
PDF2_C	PF25797	292 - 378	7.1e-24	PDF2-like, C-terminal domain
PDF2_C	PF25797	381 - 501	2e-28	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	565
AccB7I	CCANNNNNTGG	1 cut(s)	1071
AccBSI	CCGCTC	1 cut(s)	1254
AccI	GTMKAC	1 cut(s)	810
AccII	CGCG	2 cut(s)	372, 1478
AccIII	TCCGGA	1 cut(s)	252
AciI	CCGC	6 cut(s)	77, 150, 301, 539, 1254, 1476
AclWI	GGATC	4 cut(s)	244, 257, 491, 978
AcoI	YGGCCR	1 cut(s)	698
AcuI	CTGAAG	2 cut(s)	509, 900
AfaI	GTAC	4 cut(s)	59, 114, 689, 1330
AfiI	CCNNNNNNNGG	3 cut(s)	954, 1071, 1114
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	4 cut(s)	290, 325, 482, 671
AhdI	GACNNNNNGTC	1 cut(s)	172
AjnI	CCWGG	3 cut(s)	683, 1027, 1203
AloI	GAACNNNNNNTCC	2 cut(s)	1410, 1442
Alw21I	GWGCWC	2 cut(s)	947, 1132
AlwI	GGATC	4 cut(s)	244, 257, 491, 978
AlwNI	CAGNNNCTG	1 cut(s)	1028
Aor13HI	TCCGGA	1 cut(s)	252
AoxI	GGCC	1 cut(s)	698
ApeKI	GCWGC	9 cut(s)	194, 206, 334, 337, 1182, 1200, 1312, 1340, 1383
ArsI	GACNNNNNNTTYG	2 cut(s)	784, 816
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	2 cut(s)	84, 447
AspLEI	GCGC	1 cut(s)	835
AspS9I	GGNCC	1 cut(s)	1261
AsuHPI	GGTGA	3 cut(s)	248, 867, 1465
AsuII	TTCGAA	2 cut(s)	1000, 1101
AsuNHI	GCTAGC	1 cut(s)	1243
AvaII	GGWCC	1 cut(s)	1261
BalI	TGGCCA	1 cut(s)	700
BamHI	GGATCC	1 cut(s)	249
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	1132
BbsI	GAAGAC	1 cut(s)	1090
Bbv12I	GWGCWC	2 cut(s)	947, 1132
BbvI	GCAGC	9 cut(s)	193, 206, 346, 349, 1169, 1212, 1299, 1352, 1395
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	483, 517
BciT130I	CCWGG	3 cut(s)	685, 1029, 1205
BciVI	GTATCC	1 cut(s)	728
BclI	TGATCA	1 cut(s)	346
BfaI	CTAG	5 cut(s)	465, 1244, 1289, 1326, 1332
BfmI	CTRYAG	2 cut(s)	456, 1338
BfuI	GTATCC	1 cut(s)	728
BisI	GCNGC	9 cut(s)	195, 207, 335, 338, 1183, 1201, 1313, 1341, 1384
BlsI	GCNGC	9 cut(s)	196, 208, 336, 339, 1184, 1202, 1314, 1342, 1385
BmcAI	AGTACT	1 cut(s)	1330
Bme1390I	CCNGG	3 cut(s)	685, 1029, 1205
Bme18I	GGWCC	1 cut(s)	1261
BmeRI	GACNNNNNGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	1261
BmiI	GGNNCC	5 cut(s)	251, 520, 567, 1076, 1263
BmrFI	CCNGG	3 cut(s)	685, 1029, 1205
BmrI	ACTGGG	1 cut(s)	1301
BmsI	GCATC	5 cut(s)	17, 206, 403, 1245, 1395
BmtI	GCTAGC	1 cut(s)	1247
BmuI	ACTGGG	1 cut(s)	1301
BoxI	GACNNNNGTC	1 cut(s)	1029
BpiI	GAAGAC	1 cut(s)	1090
BpmI	CTGGAG	1 cut(s)	1450
Bpu10I	CCTNAGC	1 cut(s)	1131
Bpu14I	TTCGAA	2 cut(s)	1000, 1101
BpuEI	CTTGAG	2 cut(s)	314, 724
BsaAI	YACGTR	1 cut(s)	112
BsaBI	GATNNNNATC	2 cut(s)	700, 1371
BsaJI	CCNNGG	3 cut(s)	683, 1027, 1221
BsaWI	WCCGGW	2 cut(s)	252, 572
Bsc4I	CCNNNNNNNGG	3 cut(s)	954, 1071, 1114
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	4 cut(s)	12, 238, 1307, 1467
Bse3DI	GCAATG	1 cut(s)	1254
Bse8I	GATNNNNATC	2 cut(s)	700, 1371
BseAI	TCCGGA	1 cut(s)	252
BseBI	CCWGG	3 cut(s)	685, 1029, 1205
BseDI	CCNNGG	3 cut(s)	683, 1027, 1221
BseGI	GGATG	8 cut(s)	8, 197, 444, 701, 825, 1231, 1236, 1265
BseJI	GATNNNNATC	2 cut(s)	700, 1371
BseLI	CCNNNNNNNGG	3 cut(s)	954, 1071, 1114
BseMI	GCAATG	1 cut(s)	1254
BseMII	CTCAG	2 cut(s)	923, 1145
BseNI	ACTGG	4 cut(s)	12, 238, 1307, 1467
BseRI	GAGGAG	3 cut(s)	549, 629, 788
BseXI	GCAGC	9 cut(s)	193, 206, 346, 349, 1169, 1212, 1299, 1352, 1395
BseYI	CCCAGC	2 cut(s)	137, 624
BsgI	GTGCAG	2 cut(s)	373, 1168
Bsh1236I	CGCG	2 cut(s)	372, 1478
BshFI	GGCC	1 cut(s)	700
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	2 cut(s)	947, 1132
BsiSI	CCGG	4 cut(s)	5, 253, 573, 705
BslFI	GGGAC	2 cut(s)	1289, 1431
BslI	CCNNNNNNNGG	3 cut(s)	954, 1071, 1114
BsmFI	GGGAC	2 cut(s)	1289, 1431
BsmI	GAATGC	1 cut(s)	1272
BsnI	GGCC	1 cut(s)	700
Bsp119I	TTCGAA	2 cut(s)	1000, 1101
Bsp1286I	GDGCHC	2 cut(s)	947, 1132
Bsp13I	TCCGGA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
Bsp19I	CCATGG	1 cut(s)	1221
Bsp68I	TCGCGA	1 cut(s)	372
BspACI	CCGC	6 cut(s)	77, 150, 301, 539, 1254, 1476
BspANI	GGCC	1 cut(s)	700
BspCNI	CTCAG	2 cut(s)	922, 1144
BspEI	TCCGGA	1 cut(s)	252
BspFNI	CGCG	2 cut(s)	372, 1478
BspHI	TCATGA	3 cut(s)	390, 1375, 1389
BspLI	GGNNCC	5 cut(s)	251, 520, 567, 1076, 1263
BspMAI	CTGCAG	1 cut(s)	1342
BspOI	GCTAGC	1 cut(s)	1247
BspPI	GGATC	4 cut(s)	244, 257, 491, 978
BspT104I	TTCGAA	2 cut(s)	1000, 1101
BspT107I	GGYRCC	1 cut(s)	565
BsrBI	CCGCTC	1 cut(s)	1254
BsrDI	GCAATG	1 cut(s)	1254
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	4 cut(s)	12, 238, 1307, 1467
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	3 cut(s)	683, 1027, 1221
BssMI	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
BssT1I	CCWWGG	1 cut(s)	1221
Bst2UI	CCWGG	3 cut(s)	685, 1029, 1205
Bst4CI	ACNGT	7 cut(s)	260, 478, 518, 928, 997, 1094, 1414
Bst6I	CTCTTC	1 cut(s)	606
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstBAI	YACGTR	1 cut(s)	112
BstBI	TTCGAA	2 cut(s)	1000, 1101
BstC8I	GCNNGC	7 cut(s)	6, 192, 301, 846, 886, 1245, 1435
BstDEI	CTNAG	2 cut(s)	909, 1131
BstDSI	CCRYGG	1 cut(s)	1221
BstENI	CCTNNNNNAGG	1 cut(s)	1112
BstF5I	GGATG	8 cut(s)	8, 197, 444, 701, 825, 1231, 1236, 1265
BstFNI	CGCG	2 cut(s)	372, 1478
BstHHI	GCGC	1 cut(s)	835
BstKTI	GATC	6 cut(s)	252, 349, 499, 973, 1348, 1369
BstMBI	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 203, 830, 841, 1318
BstNI	CCWGG	3 cut(s)	685, 1029, 1205
BstNSI	RCATGY	3 cut(s)	94, 299, 764
BstPAI	GACNNNNGTC	1 cut(s)	1029
BstSCI	CCNGG	3 cut(s)	683, 1027, 1203
BstSFI	CTRYAG	2 cut(s)	456, 1338
BstUI	CGCG	2 cut(s)	372, 1478
BstV1I	GCAGC	9 cut(s)	193, 206, 346, 349, 1169, 1212, 1299, 1352, 1395
BstV2I	GAAGAC	1 cut(s)	1090
BstX2I	RGATCY	3 cut(s)	249, 496, 970
BstYI	RGATCY	3 cut(s)	249, 496, 970
BsuI	GTATCC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	700
BtgI	CCRYGG	1 cut(s)	1221
BtgZI	GCGATG	2 cut(s)	1134, 1344
BtsCI	GGATG	8 cut(s)	8, 197, 444, 701, 825, 1231, 1236, 1265
BtsI	GCAGTG	2 cut(s)	1053, 1335
BtsIMutI	CAGTG	6 cut(s)	265, 356, 1053, 1314, 1335, 1474
BtuMI	TCGCGA	1 cut(s)	372
Cac8I	GCNNGC	7 cut(s)	6, 192, 301, 846, 886, 1245, 1435
CaiI	CAGNNNCTG	1 cut(s)	1028
CciI	TCATGA	3 cut(s)	390, 1375, 1389
CfoI	GCGC	1 cut(s)	835
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	1261
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	4 cut(s)	58, 113, 688, 1329
CviQI	GTAC	4 cut(s)	58, 113, 688, 1329
DdeI	CTNAG	2 cut(s)	909, 1131
DpnI	GATC	6 cut(s)	251, 348, 498, 972, 1347, 1368
DpnII	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
DriI	GACNNNNNGTC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	698
Eam1104I	CTCTTC	1 cut(s)	606
Eam1105I	GACNNNNNGTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	1 cut(s)	1130
Eco130I	CCWWGG	1 cut(s)	1221
Eco24I	GRGCYC	1 cut(s)	1132
Eco47I	GGWCC	1 cut(s)	1261
Eco53kI	GAGCTC	1 cut(s)	1130
Eco57I	CTGAAG	2 cut(s)	509, 900
EcoICRI	GAGCTC	1 cut(s)	1130
EcoNI	CCTNNNNNAGG	1 cut(s)	1112
EcoO109I	RGGNCCY	1 cut(s)	1261
EcoRII	CCWGG	3 cut(s)	683, 1027, 1203
EcoT14I	CCWWGG	1 cut(s)	1221
EcoT38I	GRGCYC	1 cut(s)	1132
ErhI	CCWWGG	1 cut(s)	1221
FaqI	GGGAC	2 cut(s)	1289, 1431
FauI	CCCGC	1 cut(s)	308
FbaI	TGATCA	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	810
Fnu4HI	GCNGC	9 cut(s)	195, 207, 335, 338, 1183, 1201, 1313, 1341, 1384
FokI	GGATG	7 cut(s)	184, 451, 688, 832, 1223, 1238, 1252
FriOI	GRGCYC	1 cut(s)	1132
Fsp4HI	GCNGC	9 cut(s)	195, 207, 335, 338, 1183, 1201, 1313, 1341, 1384
FspBI	CTAG	5 cut(s)	465, 1244, 1289, 1326, 1332
GlaI	GCGC	1 cut(s)	834
GluI	GCNGC	9 cut(s)	195, 207, 335, 338, 1183, 1201, 1313, 1341, 1384
GsaI	CCCAGC	2 cut(s)	141, 628
GsuI	CTGGAG	1 cut(s)	1450
HaeIII	GGCC	1 cut(s)	700
HapII	CCGG	4 cut(s)	5, 253, 573, 705
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	835
Hin6I	GCGC	1 cut(s)	833
HinP1I	GCGC	1 cut(s)	833
HincII	GTYRAC	2 cut(s)	602, 1034
HindII	GTYRAC	2 cut(s)	602, 1034
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	6 cut(s)	85, 325, 980, 1193, 1372, 1419
HpaII	CCGG	4 cut(s)	5, 253, 573, 705
HphI	GGTGA	3 cut(s)	248, 867, 1465
Hpy166II	GTNNAC	4 cut(s)	602, 811, 937, 1034
Hpy188I	TCNGA	4 cut(s)	163, 912, 979, 1371
Hpy188III	TCNNGA	6 cut(s)	253, 371, 391, 465, 1376, 1390
Hpy8I	GTNNAC	4 cut(s)	602, 811, 937, 1034
Hpy99I	CGWCG	2 cut(s)	1125, 1193
HpyAV	CCTTC	8 cut(s)	126, 265, 427, 462, 510, 533, 882, 1292
HpyCH4III	ACNGT	7 cut(s)	260, 478, 518, 928, 997, 1094, 1414
HpyCH4IV	ACGT	3 cut(s)	111, 592, 1120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 203, 830, 841, 1318
HpyF3I	CTNAG	2 cut(s)	909, 1131
HpySE526I	ACGT	3 cut(s)	111, 592, 1120
HspAI	GCGC	1 cut(s)	833
Kpn2I	TCCGGA	1 cut(s)	252
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
LmnI	GCTCC	2 cut(s)	830, 1080
Lsp1109I	GCAGC	9 cut(s)	193, 206, 346, 349, 1169, 1212, 1299, 1352, 1395
LweI	GCATC	5 cut(s)	17, 206, 403, 1245, 1395
MaeI	CTAG	5 cut(s)	465, 1244, 1289, 1326, 1332
MaeII	ACGT	3 cut(s)	111, 592, 1120
MaeIII	GTNAC	5 cut(s)	174, 745, 800, 1018, 1471
MalI	GATC	6 cut(s)	251, 348, 498, 972, 1347, 1368
MbiI	CCGCTC	1 cut(s)	1254
MboI	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
MboII	GAAGA	4 cut(s)	302, 623, 1090, 1277
MfeI	CAATTG	2 cut(s)	630, 863
MflI	RGATCY	3 cut(s)	249, 496, 970
MhlI	GDGCHC	2 cut(s)	947, 1132
MlsI	TGGCCA	1 cut(s)	700
MluCI	AATT	5 cut(s)	443, 542, 630, 863, 902
MluNI	TGGCCA	1 cut(s)	700
MlyI	GAGTC	2 cut(s)	1202, 1413
Mox20I	TGGCCA	1 cut(s)	700
MroI	TCCGGA	1 cut(s)	252
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	2 cut(s)	84, 447
MscI	TGGCCA	1 cut(s)	700
MseI	TTAA	5 cut(s)	219, 282, 402, 920, 1482
MslI	CAYNNNNRTG	1 cut(s)	1092
Msp20I	TGGCCA	1 cut(s)	700
MspA1I	CMGCKG	1 cut(s)	529
MspI	CCGG	4 cut(s)	5, 253, 573, 705
MspR9I	CCNGG	3 cut(s)	685, 1029, 1205
MunI	CAATTG	2 cut(s)	630, 863
Mva1269I	GAATGC	1 cut(s)	1272
MvaI	CCWGG	3 cut(s)	685, 1029, 1205
MvnI	CGCG	2 cut(s)	372, 1478
MwoI	GCNNNNNNNGC	5 cut(s)	100, 203, 830, 841, 1318
NaeI	GCCGGC	1 cut(s)	6
NcoI	CCATGG	1 cut(s)	1221
NdeII	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
NgoMIV	GCCGGC	1 cut(s)	4
NheI	GCTAGC	1 cut(s)	1243
NlaIV	GGNNCC	5 cut(s)	251, 520, 567, 1076, 1263
NmuCI	GTSAC	4 cut(s)	174, 800, 1018, 1471
NruI	TCGCGA	1 cut(s)	372
NspI	RCATGY	3 cut(s)	94, 299, 764
NspV	TTCGAA	2 cut(s)	1000, 1101
PagI	TCATGA	3 cut(s)	390, 1375, 1389
PcsI	WCGNNNNNNNCGW	1 cut(s)	1117
PctI	GAATGC	1 cut(s)	1272
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	2 cut(s)	84, 447
PfeI	GAWTC	4 cut(s)	85, 325, 980, 1372
PflMI	CCANNNNNTGG	1 cut(s)	1071
PkrI	GCNGC	9 cut(s)	196, 208, 336, 339, 1184, 1202, 1314, 1342, 1385
PleI	GAGTC	2 cut(s)	1201, 1413
PpsI	GAGTC	2 cut(s)	1201, 1413
Ppu21I	YACGTR	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	1261
PshAI	GACNNNNGTC	1 cut(s)	1029
PshBI	ATTAAT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	1132
Psp5II	RGGWCCY	1 cut(s)	1261
Psp6I	CCWGG	3 cut(s)	683, 1027, 1203
PspFI	CCCAGC	2 cut(s)	137, 624
PspGI	CCWGG	3 cut(s)	683, 1027, 1203
PspN4I	GGNNCC	5 cut(s)	251, 520, 567, 1076, 1263
PspPI	GGNCC	1 cut(s)	1261
PspPPI	RGGWCCY	1 cut(s)	1261
PstI	CTGCAG	1 cut(s)	1342
PstNI	CAGNNNCTG	1 cut(s)	1028
PsuI	RGATCY	3 cut(s)	249, 496, 970
PvuII	CAGCTG	1 cut(s)	529
RruI	TCGCGA	1 cut(s)	372
RsaI	GTAC	4 cut(s)	59, 114, 689, 1330
RsaNI	GTAC	4 cut(s)	58, 113, 688, 1329
RseI	CAYNNNNRTG	1 cut(s)	1092
SacI	GAGCTC	1 cut(s)	1132
SaqAI	TTAA	5 cut(s)	219, 282, 402, 920, 1482
SatI	GCNGC	9 cut(s)	195, 207, 335, 338, 1183, 1201, 1313, 1341, 1384
Sau3AI	GATC	6 cut(s)	249, 346, 496, 970, 1345, 1366
Sau96I	GGNCC	1 cut(s)	1261
ScaI	AGTACT	1 cut(s)	1330
SchI	GAGTC	2 cut(s)	1202, 1413
ScrFI	CCNGG	3 cut(s)	685, 1029, 1205
SduI	GDGCHC	2 cut(s)	947, 1132
SfaNI	GCATC	5 cut(s)	17, 206, 403, 1245, 1395
SfcI	CTRYAG	2 cut(s)	456, 1338
SfuI	TTCGAA	2 cut(s)	1000, 1101
SinI	GGWCC	1 cut(s)	1261
SmiMI	CAYNNNNRTG	1 cut(s)	1092
SmlI	CTYRAG	2 cut(s)	329, 739
SmoI	CTYRAG	2 cut(s)	329, 739
Sse9I	AATT	5 cut(s)	443, 542, 630, 863, 902
SsiI	CCGC	6 cut(s)	77, 150, 301, 539, 1254, 1476
SspI	AATATT	1 cut(s)	795
SspMI	CTAG	5 cut(s)	465, 1244, 1289, 1326, 1332
SstI	GAGCTC	1 cut(s)	1132
StyD4I	CCNGG	3 cut(s)	683, 1027, 1203
StyI	CCWWGG	1 cut(s)	1221
TaaI	ACNGT	7 cut(s)	260, 478, 518, 928, 997, 1094, 1414
TaiI	ACGT	3 cut(s)	114, 595, 1123
TaqI	TCGA	3 cut(s)	1000, 1101, 1139
TasI	AATT	5 cut(s)	443, 542, 630, 863, 902
TatI	WGTACW	1 cut(s)	1328
TfiI	GAWTC	4 cut(s)	85, 325, 980, 1372
Tru1I	TTAA	5 cut(s)	219, 282, 402, 920, 1482
Tru9I	TTAA	5 cut(s)	219, 282, 402, 920, 1482
TscAI	CASTG	6 cut(s)	265, 356, 1060, 1314, 1342, 1474
TseFI	GTSAC	4 cut(s)	174, 800, 1018, 1471
TseI	GCWGC	9 cut(s)	194, 206, 334, 337, 1182, 1200, 1312, 1340, 1383
Tsp45I	GTSAC	4 cut(s)	174, 800, 1018, 1471
TspDTI	ATGAA	6 cut(s)	44, 407, 624, 914, 1392, 1406
TspGWI	ACGGA	1 cut(s)	983
TspRI	CASTG	6 cut(s)	265, 356, 1060, 1314, 1342, 1474
Van91I	CCANNNNNTGG	1 cut(s)	1071
VpaK11BI	GGWCC	1 cut(s)	1261
VspI	ATTAAT	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	1112
XbaI	TCTAGA	1 cut(s)	464
XceI	RCATGY	3 cut(s)	94, 299, 764
XcmI	CCANNNNNNNNNTGG	1 cut(s)	19
XmiI	GTMKAC	1 cut(s)	810
XmnI	GAANNNNTTC	2 cut(s)	84, 447
XspI	CTAG	5 cut(s)	465, 1244, 1289, 1326, 1332
ZrmI	AGTACT	1 cut(s)	1330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.