Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

40998370 .. 41004471

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00247640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2337 bp

ATGTATGGGGATTGCCAAGTAATGTCAACCATGGGAGGTGGGAACGTAGTCAACTCTGAAACCCTCTTTTCCTCGCCGATGCAAAACCCTAACTTCAACTTCATGCCTTTCCAGCCTTTCTCTTCCATCCTTCCGAAGGAAGAAACTGGGCTTATGACTAGAGGAAAGGAGGAGATGATGGAGAGTGGCTCTGGGAGTGAACATGCTGAAGAAAAGTACTCCGGCAACGAACAAGAGACCGAAGAACAACTGCAACAACAGCCTTCCAAAAAGAAACGCTACCATCGCCATACCGCTCACCAGATCCAAGAAATGGAAAAGTACTACACAGACCACAATTCCCTTTTCCGCTACTTTTTATTTAAGGAGTGTCCACACCCAGATGACAAGCAGAGGCAAAAGCTGAGCCTAGATCTGGGGCTGAAACCACGCCAGGCACAACAAGACCGGGCTGATAATGTCATGCTTAGAGCTGAAAATGATACCCTAAAAATGAGAATTACAGGCTTCAAGCTGCACTGCGCAACATTATATGCCCTAACTGTGGAGTTGGAACGAGTTTGTTGCCTCTCCGGGTTCCCTGGGGGCCGGCAAATTCAAACGATGGGACCAGCAGCCCCTCTAATGACAGCATCTTTAGACTTGGACATGAATATCTATTCAAGGCATTTCCCTGACTCAATGATAAGTTCATGTACTGATCATCATATGATTCCCATGAGTAGTTTGCCACCAGAGCCTTCTCACTTCCCTGAGGGAGGTCTGTTGTTAGATGAAGAGAAGACACTTGCAATGAAGGTCGCTGCTTCCTCCCTTGAAGAACTTGTTAAGATGTGCACTGCTAGTGAGCCTCTTTGGATGAAAAACAGTGAGAATGGAATGGAAATGCTTAATGCTGAAGAACGAGCTCGTATGTTCCCTTGGCCTTTGAACTTCAAGCAGAACTTAAGTGATTTAAGAACTGAAGCTACTCGTGATACTGCTGTGGTCATAATGAATAGCATTAATCTTGTGGATGCCTTCCTTGATGCTAATAAGTGGATGGAATTGTTTCCTTCTATTGTTTCTAAAGCAAAAACAGTTCAAGTAATCTCAGCAGATCCTTCTGGTCAGGCAAATGGTTCACTTCAGCTGATATATGCGGAATTGCAAGTTGTTTCTCCTCTGGTGCCAACTAGAGAAGCTCATTTCCTGCGCTATTGTCAACAAAATGAAGAGGAGGGAAGTTGGGCAATTGTCGATTTCCCAATTGATAGTTTCCATGGCAGCTTCCAACCTTCCTTTCCCCGGTACAAGAGATGGCCTTCCGGCTGTCTCATCCAAGATATGCCCAATGGATACTCAAGGGTTACCTGGGTAGAACATGCAGAGGTAGAGGAGAAACCTGTCCATCAAATATTCAGTCATTATGTCTACAGTGGGATGGCTTTTGGGGCGCATAGATGGTTGGCTGTTTTACAGAGGCAATGTGAAAGGGTTGCAAGTCTCATGGCCAGAAATATATCAGACCTCGGAGTGATACCTTCTCCTGAGGCGAGAAGGAATTTGATGAGACTAGCCCAGAGAATGATAAGAACATTCAGTGTGAACATGAGCACATCCAGTGGGCAGGCATGGACGGCTCTATCGGATTCCCCAGATGACACTATTCGAATAACCACAAGGAAAGTCTCAGAGGCTGGCCAACCCAATGGAGTCATTCTCAGTGCAGTTTCCACCACCTGGCTCCCTTATTCTCACTACCGTGTCTTTGAGCTCTTAAGGGACGAACGTCGCAGAGCTCAGCTTGATGTTCTTTCCAATGGAACTTCCTTGCAAGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAATTGTATTTCTGTACTTCGCGTTAATGTAGCTAGCAACTCAACGCAGAACATAGAGCTGATGCTACAAGAGAGTTGCACCGATCAGTCAGGAAGCCTGGTTGTGTACGCAACCATGGACGTGAACGATATCCAATTGGCAATGAGCGGAGAGGATCCATCCTGCATTCCCATCCTTCCTCTAGGGTTTGCCATTGTCCCAGTTGAGTCCACTACCAAGAGTACTACTACAACATCCCCGTCTGCCCAAGACAGCCGCAACTCGGGTTGCCTTATGACAGTGGGACTCCAAGTTGTTGCCAGCCCAAACCCTACTGCAAAGCTCAACCTCTCCACCGTCAGTGCCATTAACAACCACCTGTGCAACTCGGTCCAGCAGATCATCTCAGCTCTCGGCAACACCACCACAACAACTACTGATAATGGCAACACTGTTGGTGGAGGTGGCTCTTGCTCCGAGCCAACTGCTGCGAGCTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

778

Amino Acids

86.3

Weight (kDa)

5.61

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
START	PF01852	267 - 492	1.9e-41	START domain
PDF2_C	PF25797	509 - 749	1.1e-80	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	1168
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1722
AccBSI	CCGCTC	2 cut(s)	296, 2001
AccI	GTMKAC	1 cut(s)	1413
AccII	CGCG	1 cut(s)	1875
AciI	CCGC	5 cut(s)	294, 349, 1142, 2001, 2110
AclWI	GGATC	4 cut(s)	298, 1094, 2003, 2016
AcoI	YGGCCR	2 cut(s)	1491, 1681
AcsI	RAATTY	2 cut(s)	594, 1543
AcuI	CTGAAG	4 cut(s)	228, 918, 984, 1112
AfaI	GTAC	7 cut(s)	218, 323, 697, 1292, 1869, 1961, 2077
AfiI	CCNNNNNNNGG	8 cut(s)	136, 313, 415, 544, 758, 1287, 1722, 2116
AflII	CTTAAG	2 cut(s)	946, 1759
AgsI	TTSAA	8 cut(s)	97, 511, 599, 663, 818, 931, 937, 1085
AjiI	CACGTC	1 cut(s)	1975
AjnI	CCWGG	6 cut(s)	432, 580, 1352, 1721, 1849, 1950
AjuI	GAANNNNNNNTTGG	2 cut(s)	1266, 1298
AleI	CACNNNNGTG	1 cut(s)	1743
Alw21I	GWGCWC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
Alw26I	GTCTC	5 cut(s)	230, 1319, 1490, 1546, 1675
Alw44I	GTGCAC	1 cut(s)	835
AlwI	GGATC	4 cut(s)	298, 1094, 2003, 2016
AlwNI	CAGNNNCTG	1 cut(s)	1679
Ama87I	CYCGRG	1 cut(s)	2116
AoxI	GGCC	5 cut(s)	586, 923, 1301, 1491, 1681
ApaLI	GTGCAC	1 cut(s)	835
ApeKI	GCWGC	5 cut(s)	514, 614, 803, 1266, 2321
ApoI	RAATTY	2 cut(s)	594, 1543
ArsI	GACNNNNNNTTYG	2 cut(s)	1387, 1419
AseI	ATTAAT	1 cut(s)	1005
Asp700I	GAANNNNTTC	1 cut(s)	1050
AspLEI	GCGC	3 cut(s)	524, 1197, 1438
AspS9I	GGNCC	3 cut(s)	586, 608, 2224
AsuC2I	CCSGG	3 cut(s)	449, 574, 1288
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	1651
AsuNHI	GCTAGC	1 cut(s)	1886
AvaI	CYCGRG	1 cut(s)	2116
AvaII	GGWCC	2 cut(s)	608, 2224
AxyI	CCTNAGG	2 cut(s)	753, 1530
BaeGI	GKGCMC	1 cut(s)	839
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BalI	TGGCCA	2 cut(s)	1493, 1683
BamHI	GGATCC	1 cut(s)	2008
BanI	GGYRCC	1 cut(s)	1168
BanII	GRGCYC	4 cut(s)	910, 1758, 1783, 2330
BauI	CACGAG	1 cut(s)	972
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
BbvI	GCAGC	5 cut(s)	501, 626, 790, 1278, 2308
BceAI	ACGGC	1 cut(s)	1635
BcgI	CGANNNNNNTGC	4 cut(s)	546, 580, 2300, 2334
BciT130I	CCWGG	6 cut(s)	434, 582, 1354, 1723, 1851, 1952
BciVI	GTATCC	1 cut(s)	1331
BclI	TGATCA	1 cut(s)	700
BcnI	CCSGG	3 cut(s)	449, 574, 1288
BcoDI	GTCTC	5 cut(s)	230, 1319, 1490, 1546, 1675
BfaI	CTAG	7 cut(s)	159, 410, 843, 1176, 1556, 1887, 2036
BfmI	CTRYAG	1 cut(s)	1414
BfrI	CTTAAG	2 cut(s)	946, 1759
BfuI	GTATCC	1 cut(s)	1331
BglII	AGATCT	1 cut(s)	412
BisI	GCNGC	6 cut(s)	515, 615, 804, 1267, 2110, 2322
BlpI	GCTNAGC	2 cut(s)	404, 1782
BlsI	GCNGC	6 cut(s)	516, 616, 805, 1268, 2111, 2323
BmcAI	AGTACT	3 cut(s)	218, 323, 2077
Bme1390I	CCNGG	9 cut(s)	434, 449, 574, 582, 1288, 1354, 1723, 1851, 1952
Bme18I	GGWCC	2 cut(s)	608, 2224
BmeT110I	CYCGRG	1 cut(s)	2116
BmgBI	CACGTC	1 cut(s)	1975
BmgT120I	GGNCC	3 cut(s)	586, 608, 2224
BmiI	GGNNCC	6 cut(s)	578, 587, 609, 1170, 1727, 2010
BmrFI	CCNGG	9 cut(s)	434, 449, 574, 582, 1288, 1354, 1723, 1851, 1952
BmrI	ACTGGG	2 cut(s)	156, 2048
BmsI	GCATC	5 cut(s)	69, 641, 1006, 1018, 1905
BmtI	GCTAGC	1 cut(s)	1890
BmuI	ACTGGG	2 cut(s)	156, 2048
BoxI	GACNNNNGTC	1 cut(s)	1770
BpiI	GAAGAC	1 cut(s)	788
BplI	GAGNNNNNCTC	4 cut(s)	173, 205, 1686, 1718
Bpu1102I	GCTNAGC	2 cut(s)	404, 1782
Bpu14I	TTCGAA	1 cut(s)	1651
BpuEI	CTTGAG	1 cut(s)	1327
BpuMI	CCSGG	3 cut(s)	449, 574, 1288
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	9 cut(s)	30, 580, 581, 920, 1261, 1286, 1353, 1510, 1968
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 313, 415, 544, 758, 1287, 1722, 2116
Bse118I	RCCGGY	1 cut(s)	588
Bse1I	ACTGG	3 cut(s)	151, 1602, 2054
Bse21I	CCTNAGG	2 cut(s)	753, 1530
Bse3DI	GCAATG	4 cut(s)	798, 1472, 1830, 2001
BseBI	CCWGG	6 cut(s)	434, 582, 1354, 1723, 1851, 1952
BseDI	CCNNGG	9 cut(s)	30, 580, 581, 920, 1261, 1286, 1353, 1510, 1968
BseLI	CCNNNNNNNGG	8 cut(s)	136, 313, 415, 544, 758, 1287, 1722, 2116
BseMI	GCAATG	4 cut(s)	798, 1472, 1830, 2001
BseMII	CTCAG	8 cut(s)	395, 744, 1107, 1521, 1686, 1717, 1796, 2253
BseNI	ACTGG	3 cut(s)	151, 1602, 2054
BseRI	GAGGAG	4 cut(s)	185, 1152, 1232, 1391
BseSI	GKGCMC	1 cut(s)	839
BseXI	GCAGC	5 cut(s)	501, 626, 790, 1278, 2308
BsgI	GTGCAG	2 cut(s)	500, 1728
Bsh1236I	CGCG	1 cut(s)	1875
BshFI	GGCC	5 cut(s)	588, 925, 1303, 1493, 1683
BshNI	GGYRCC	1 cut(s)	1168
BsiHKAI	GWGCWC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
BsiHKCI	CYCGRG	1 cut(s)	2116
BsiSI	CCGG	6 cut(s)	222, 448, 573, 589, 1288, 1308
BslFI	GGGAC	4 cut(s)	621, 1778, 2036, 2151
BslI	CCNNNNNNNGG	8 cut(s)	136, 313, 415, 544, 758, 1287, 1722, 2116
BsmAI	GTCTC	5 cut(s)	230, 1319, 1490, 1546, 1675
BsmFI	GGGAC	4 cut(s)	621, 1778, 2036, 2151
BsmI	GAATGC	1 cut(s)	2019
BsnI	GGCC	5 cut(s)	588, 925, 1303, 1493, 1683
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	2116
Bsp119I	TTCGAA	1 cut(s)	1651
Bsp1286I	GDGCHC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
Bsp143I	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
Bsp1720I	GCTNAGC	2 cut(s)	404, 1782
Bsp19I	CCATGG	3 cut(s)	30, 1261, 1968
BspACI	CCGC	5 cut(s)	294, 349, 1142, 2001, 2110
BspANI	GGCC	5 cut(s)	588, 925, 1303, 1493, 1683
BspCNI	CTCAG	8 cut(s)	396, 745, 1106, 1522, 1685, 1716, 1795, 2252
BspFNI	CGCG	1 cut(s)	1875
BspLI	GGNNCC	6 cut(s)	578, 587, 609, 1170, 1727, 2010
BspOI	GCTAGC	1 cut(s)	1890
BspPI	GGATC	4 cut(s)	298, 1094, 2003, 2016
BspT104I	TTCGAA	1 cut(s)	1651
BspT107I	GGYRCC	1 cut(s)	1168
BspTI	CTTAAG	2 cut(s)	946, 1759
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	2 cut(s)	296, 2001
BsrDI	GCAATG	4 cut(s)	798, 1472, 1830, 2001
BsrFI	RCCGGY	1 cut(s)	588
BsrI	ACTGG	3 cut(s)	151, 1602, 2054
BssAI	RCCGGY	1 cut(s)	588
BssECI	CCNNGG	9 cut(s)	30, 580, 581, 920, 1261, 1286, 1353, 1510, 1968
BssMI	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
BssSI	CACGAG	1 cut(s)	972
BssT1I	CCWWGG	4 cut(s)	30, 920, 1261, 1968
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	6 cut(s)	434, 582, 1354, 1723, 1851, 1952
Bst4CI	ACNGT	8 cut(s)	544, 869, 1081, 1418, 1745, 2134, 2191, 2287
Bst6I	CTCTTC	3 cut(s)	127, 771, 1209
BstAFI	CTTAAG	2 cut(s)	946, 1759
BstBI	TTCGAA	1 cut(s)	1651
BstC8I	GCNNGC	6 cut(s)	590, 1611, 1681, 1888, 2155, 2326
BstDEI	CTNAG	9 cut(s)	404, 467, 753, 1093, 1530, 1672, 1703, 1782, 2239
BstDSI	CCRYGG	3 cut(s)	30, 1261, 1968
BstEII	GGTNACC	1 cut(s)	1348
BstENI	CCTNNNNNAGG	2 cut(s)	134, 756
BstFNI	CGCG	1 cut(s)	1875
BstHHI	GCGC	3 cut(s)	524, 1197, 1438
BstKTI	GATC	7 cut(s)	306, 415, 703, 1102, 1939, 2011, 2235
BstMAI	GTCTC	5 cut(s)	230, 1319, 1490, 1546, 1675
BstMBI	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 736, 1433, 1619, 1832
BstNI	CCWGG	6 cut(s)	434, 582, 1354, 1723, 1851, 1952
BstNSI	RCATGY	2 cut(s)	206, 1367
BstPAI	GACNNNNGTC	1 cut(s)	1770
BstPI	GGTNACC	1 cut(s)	1348
BstSCI	CCNGG	9 cut(s)	432, 447, 572, 580, 1286, 1352, 1721, 1849, 1950
BstSFI	CTRYAG	1 cut(s)	1414
BstSLI	GKGCMC	1 cut(s)	839
BstUI	CGCG	1 cut(s)	1875
BstV1I	GCAGC	5 cut(s)	501, 626, 790, 1278, 2308
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	4 cut(s)	303, 412, 1099, 2008
BstXI	CCANNNNNNTGG	1 cut(s)	1691
BstYI	RGATCY	4 cut(s)	303, 412, 1099, 2008
Bsu36I	CCTNAGG	2 cut(s)	753, 1530
BsuI	GTATCC	1 cut(s)	1331
BsuRI	GGCC	5 cut(s)	588, 925, 1303, 1493, 1683
BtgI	CCRYGG	3 cut(s)	30, 1261, 1968
BtgZI	GCGATG	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	1975
BtsI	GCAGTG	2 cut(s)	517, 837
Cac8I	GCNNGC	6 cut(s)	590, 1611, 1681, 1888, 2155, 2326
CaiI	CAGNNNCTG	1 cut(s)	1679
CfoI	GCGC	3 cut(s)	524, 1197, 1438
Cfr10I	RCCGGY	1 cut(s)	588
Cfr13I	GGNCC	3 cut(s)	586, 608, 2224
Csp6I	GTAC	7 cut(s)	217, 322, 696, 1291, 1868, 1960, 2076
CviQI	GTAC	7 cut(s)	217, 322, 696, 1291, 1868, 1960, 2076
DdeI	CTNAG	9 cut(s)	404, 467, 753, 1093, 1530, 1672, 1703, 1782, 2239
DpnI	GATC	7 cut(s)	305, 414, 702, 1101, 1938, 2010, 2234
DpnII	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
EaeI	YGGCCR	2 cut(s)	1491, 1681
Eam1104I	CTCTTC	3 cut(s)	127, 771, 1209
EarI	CTCTTC	3 cut(s)	127, 771, 1209
Ecl136II	GAGCTC	4 cut(s)	908, 1756, 1781, 2328
Eco130I	CCWWGG	4 cut(s)	30, 920, 1261, 1968
Eco24I	GRGCYC	4 cut(s)	910, 1758, 1783, 2330
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	1984
Eco47I	GGWCC	2 cut(s)	608, 2224
Eco53kI	GAGCTC	4 cut(s)	908, 1756, 1781, 2328
Eco57I	CTGAAG	4 cut(s)	228, 918, 984, 1112
Eco81I	CCTNAGG	2 cut(s)	753, 1530
Eco88I	CYCGRG	1 cut(s)	2116
Eco91I	GGTNACC	1 cut(s)	1348
EcoICRI	GAGCTC	4 cut(s)	908, 1756, 1781, 2328
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 756
EcoO65I	GGTNACC	1 cut(s)	1348
EcoRII	CCWGG	6 cut(s)	432, 580, 1352, 1721, 1849, 1950
EcoRV	GATATC	1 cut(s)	1984
EcoT14I	CCWWGG	4 cut(s)	30, 920, 1261, 1968
EcoT38I	GRGCYC	4 cut(s)	910, 1758, 1783, 2330
ErhI	CCWWGG	4 cut(s)	30, 920, 1261, 1968
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FaqI	GGGAC	4 cut(s)	621, 1778, 2036, 2151
FauNDI	CATATG	1 cut(s)	708
FbaI	TGATCA	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	1413
Fnu4HI	GCNGC	6 cut(s)	515, 615, 804, 1267, 2110, 2322
FriOI	GRGCYC	4 cut(s)	910, 1758, 1783, 2330
Fsp4HI	GCNGC	6 cut(s)	515, 615, 804, 1267, 2110, 2322
FspBI	CTAG	7 cut(s)	159, 410, 843, 1176, 1556, 1887, 2036
FspI	TGCGCA	1 cut(s)	523
GlaI	GCGC	3 cut(s)	523, 1196, 1437
GluI	GCNGC	6 cut(s)	515, 615, 804, 1267, 2110, 2322
HaeIII	GGCC	5 cut(s)	588, 925, 1303, 1493, 1683
HapII	CCGG	6 cut(s)	222, 448, 573, 589, 1288, 1308
HhaI	GCGC	3 cut(s)	524, 1197, 1438
Hin6I	GCGC	3 cut(s)	522, 1195, 1436
HinP1I	GCGC	3 cut(s)	522, 1195, 1436
HincII	GTYRAC	3 cut(s)	27, 52, 1205
HindII	GTYRAC	3 cut(s)	27, 52, 1205
HinfI	GANTC	6 cut(s)	677, 712, 1631, 1695, 2060, 2139
HpaII	CCGG	6 cut(s)	222, 448, 573, 589, 1288, 1308
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	7 cut(s)	58, 135, 1507, 1514, 1630, 1675, 2311
Hpy188III	TCNNGA	3 cut(s)	974, 1529, 1944
Hpy99I	CGWCG	1 cut(s)	1776
HpyCH4III	ACNGT	8 cut(s)	544, 869, 1081, 1418, 1745, 2134, 2191, 2287
HpyCH4IV	ACGT	3 cut(s)	45, 1771, 1974
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 736, 1433, 1619, 1832
HpyF3I	CTNAG	9 cut(s)	404, 467, 753, 1093, 1530, 1672, 1703, 1782, 2239
HpySE526I	ACGT	3 cut(s)	45, 1771, 1974
HspAI	GCGC	3 cut(s)	522, 1195, 1436
KroI	GCCGGC	1 cut(s)	588
KroNI	GCCGGC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	700
Kzo9I	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
LmnI	GCTCC	3 cut(s)	1731, 2312, 2333
Lsp1109I	GCAGC	5 cut(s)	501, 626, 790, 1278, 2308
LweI	GCATC	5 cut(s)	69, 641, 1006, 1018, 1905
MaeI	CTAG	7 cut(s)	159, 410, 843, 1176, 1556, 1887, 2036
MaeII	ACGT	3 cut(s)	45, 1771, 1974
MaeIII	GTNAC	1 cut(s)	1348
MalI	GATC	7 cut(s)	305, 414, 702, 1101, 1938, 2010, 2234
MbiI	CCGCTC	2 cut(s)	296, 2001
MboI	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
MboII	GAAGA	9 cut(s)	114, 152, 221, 254, 788, 793, 830, 911, 1226
MfeI	CAATTG	3 cut(s)	1233, 1248, 1988
MflI	RGATCY	4 cut(s)	303, 412, 1099, 2008
MhlI	GDGCHC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
MlsI	TGGCCA	2 cut(s)	1493, 1683
MluNI	TGGCCA	2 cut(s)	1493, 1683
MlyI	GAGTC	4 cut(s)	671, 1704, 2069, 2133
MmeI	TCCRAC	2 cut(s)	531, 1297
Mox20I	TGGCCA	2 cut(s)	1493, 1683
MroNI	GCCGGC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	1050
MscI	TGGCCA	2 cut(s)	1493, 1683
MseI	TTAA	9 cut(s)	363, 828, 891, 947, 956, 1005, 1760, 1878, 2202
MslI	CAYNNNNRTG	3 cut(s)	381, 1743, 1973
Msp20I	TGGCCA	2 cut(s)	1493, 1683
MspA1I	CMGCKG	1 cut(s)	1132
MspCI	CTTAAG	2 cut(s)	946, 1759
MspI	CCGG	6 cut(s)	222, 448, 573, 589, 1288, 1308
MspR9I	CCNGG	9 cut(s)	434, 449, 574, 582, 1288, 1354, 1723, 1851, 1952
MunI	CAATTG	3 cut(s)	1233, 1248, 1988
Mva1269I	GAATGC	1 cut(s)	2019
MvaI	CCWGG	6 cut(s)	434, 582, 1354, 1723, 1851, 1952
MvnI	CGCG	1 cut(s)	1875
MwoI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 736, 1433, 1619, 1832
NaeI	GCCGGC	1 cut(s)	590
NciI	CCSGG	3 cut(s)	449, 574, 1288
NcoI	CCATGG	3 cut(s)	30, 1261, 1968
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
NgoMIV	GCCGGC	1 cut(s)	588
NheI	GCTAGC	1 cut(s)	1886
NlaIV	GGNNCC	6 cut(s)	578, 587, 609, 1170, 1727, 2010
NmeAIII	GCCGAG	1 cut(s)	2226
NsbI	TGCGCA	1 cut(s)	523
NspI	RCATGY	2 cut(s)	206, 1367
NspV	TTCGAA	1 cut(s)	1651
OliI	CACNNNNGTG	1 cut(s)	1743
PasI	CCCWGGG	1 cut(s)	581
PctI	GAATGC	1 cut(s)	2019
PdiI	GCCGGC	1 cut(s)	590
PdmI	GAANNNNTTC	1 cut(s)	1050
PfeI	GAWTC	2 cut(s)	712, 1631
PflMI	CCANNNNNTGG	2 cut(s)	313, 1722
PfoI	TCCNGGA	1 cut(s)	1849
PkrI	GCNGC	6 cut(s)	516, 616, 805, 1268, 2111, 2323
PleI	GAGTC	4 cut(s)	671, 1703, 2068, 2133
PpsI	GAGTC	4 cut(s)	671, 1703, 2068, 2133
PshAI	GACNNNNGTC	1 cut(s)	1770
PshBI	ATTAAT	1 cut(s)	1005
Psp124BI	GAGCTC	4 cut(s)	910, 1758, 1783, 2330
Psp6I	CCWGG	6 cut(s)	432, 580, 1352, 1721, 1849, 1950
PspEI	GGTNACC	1 cut(s)	1348
PspGI	CCWGG	6 cut(s)	432, 580, 1352, 1721, 1849, 1950
PspN4I	GGNNCC	6 cut(s)	578, 587, 609, 1170, 1727, 2010
PspPI	GGNCC	3 cut(s)	586, 608, 2224
PsrI	GAACNNNNNNTAC	2 cut(s)	952, 984
PstNI	CAGNNNCTG	1 cut(s)	1679
PsuI	RGATCY	4 cut(s)	303, 412, 1099, 2008
PvuII	CAGCTG	1 cut(s)	1132
RsaI	GTAC	7 cut(s)	218, 323, 697, 1292, 1869, 1961, 2077
RsaNI	GTAC	7 cut(s)	217, 322, 696, 1291, 1868, 1960, 2076
RseI	CAYNNNNRTG	3 cut(s)	381, 1743, 1973
SacI	GAGCTC	4 cut(s)	910, 1758, 1783, 2330
SaqAI	TTAA	9 cut(s)	363, 828, 891, 947, 956, 1005, 1760, 1878, 2202
SatI	GCNGC	6 cut(s)	515, 615, 804, 1267, 2110, 2322
Sau3AI	GATC	7 cut(s)	303, 412, 700, 1099, 1936, 2008, 2232
Sau96I	GGNCC	3 cut(s)	586, 608, 2224
ScaI	AGTACT	3 cut(s)	218, 323, 2077
SchI	GAGTC	4 cut(s)	671, 1704, 2069, 2133
ScrFI	CCNGG	9 cut(s)	434, 449, 574, 582, 1288, 1354, 1723, 1851, 1952
SduI	GDGCHC	6 cut(s)	839, 910, 1598, 1758, 1783, 2330
SfaNI	GCATC	5 cut(s)	69, 641, 1006, 1018, 1905
SfcI	CTRYAG	1 cut(s)	1414
SfuI	TTCGAA	1 cut(s)	1651
SinI	GGWCC	2 cut(s)	608, 2224
SmiMI	CAYNNNNRTG	3 cut(s)	381, 1743, 1973
SmlI	CTYRAG	3 cut(s)	946, 1342, 1759
SmoI	CTYRAG	3 cut(s)	946, 1342, 1759
SsiI	CCGC	5 cut(s)	294, 349, 1142, 2001, 2110
SspI	AATATT	1 cut(s)	1398
SspMI	CTAG	7 cut(s)	159, 410, 843, 1176, 1556, 1887, 2036
SstI	GAGCTC	4 cut(s)	910, 1758, 1783, 2330
StyD4I	CCNGG	9 cut(s)	432, 447, 572, 580, 1286, 1352, 1721, 1849, 1950
StyI	CCWWGG	4 cut(s)	30, 920, 1261, 1968
TaaI	ACNGT	8 cut(s)	544, 869, 1081, 1418, 1745, 2134, 2191, 2287
TaiI	ACGT	3 cut(s)	48, 1774, 1977
TaqI	TCGA	2 cut(s)	1239, 1651
TaqII	GACCGA	2 cut(s)	254, 2212
TatI	WGTACW	5 cut(s)	216, 321, 695, 1867, 2075
TauI	GCSGC	1 cut(s)	2112
TfiI	GAWTC	2 cut(s)	712, 1631
Tru1I	TTAA	9 cut(s)	363, 828, 891, 947, 956, 1005, 1760, 1878, 2202
Tru9I	TTAA	9 cut(s)	363, 828, 891, 947, 956, 1005, 1760, 1878, 2202
TseI	GCWGC	5 cut(s)	514, 614, 803, 1266, 2321
TspDTI	ATGAA	8 cut(s)	91, 665, 681, 789, 809, 875, 1010, 1227
Van91I	CCANNNNNTGG	2 cut(s)	313, 1722
Vha464I	CTTAAG	2 cut(s)	946, 1759
VneI	GTGCAC	1 cut(s)	835
VpaK11BI	GGWCC	2 cut(s)	608, 2224
VspI	ATTAAT	1 cut(s)	1005
XagI	CCTNNNNNAGG	2 cut(s)	134, 756
XapI	RAATTY	2 cut(s)	594, 1543
XceI	RCATGY	2 cut(s)	206, 1367
XmiI	GTMKAC	1 cut(s)	1413
XmnI	GAANNNNTTC	1 cut(s)	1050
XspI	CTAG	7 cut(s)	159, 410, 843, 1176, 1556, 1887, 2036
ZrmI	AGTACT	3 cut(s)	218, 323, 2077

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.