Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

10021085 .. 10026426

Gene Structure 5342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0127100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3252 bp

ATGGCTTTGCTTAGAGTTTCATGGGCTGTTTTGTTTCTTTGGGTTTTCTCAGTTTTGTGCTTAAAGGCAGAGTCTGATAGTTCAGAGGTCTCTTTTAAGTTCTTGAAAGCTCCTCATGCATTTTCTCATCTGAACTCAGCCACATTTGCATTTGAAGCTTTGGTTGGTGGGAATGCTAGCACATGCACCAATTGCAGTTTCAGTTGCAAGCTAGATGATGGCATTGGTTCGAATTGTGGAACTGGGAAAGTTTTGTACTCAGGATTGCAGGATGGAAAACATACATTTGATGTCTGCACCAATGGGACTCAAGGAGTTGGTTGTGCCTACTATAACTGGACTGTTGATACAGTACCCCCAACAGCATCTGTTACTGCCTCAAGATCTTTTACAAATGCTACGAGTGTATCAGTAAATATTTCTTTCAGTGAATCCTGCAACGGCGGAGGAGGTTTTGGATGCTCATCTGTGAACACCTGCAACCTGCTAGTCTATGGTGCTGGCGAAGTTATACCATCTTCACTTAATATTCTGGAGCCAAACCTCAAATATTCTCTTGATGTGGGTTTATCATCTTCTGTTCACTATGGACGAGTGATCCTGGTAATGGATAAGAACTTCTGCTCTGATGTTGCTGGAAACAGATTCGTAAGAACCAAAAATTCGCGTTTCTATGTACGCATTGATAGAAGACCTGTCTTTTCCAACCTGAGGATTCATATTCCTGAAACGCTACTTCAGTTAAATGGTGAAACTCGAACAGTGCAGGCGACTAATAATCATAATAACTTAAAGATGTATCTATATTTCTCAGAACCTGTCCTGAATACATCTGCACAAATTTTAAACACTATCAACATAAGTCAGGGCTTACTTTTACCGGATAGCACAAACAACTCTGGAAATCGCAGATTTGGCTTTGCGGTTTCAAACACATCTAGCATTGCTATAATCACGGTGAGCCTCGATTCAAATTTGATAATAACCAGACAAGGGACTCCAGTTTCTCCAATTTCACCAGCAACTTTCCTTTTCGATTCTCAAAGGCCTGCAGTGAAGTTGAGTACAACCTCAAGCATGAGAACAAGAGAAGACACTATTTCTATATTAATAAAATTCATAAAGCCTGTATTTGGTTTCAACTCTTCTTTTTTAGCACTCTCAGGAGGGCATTTACAAAGCTTTTGTGAAGTAAGTAGGAGTATGTACACTGTCAATATAGAAGCAATTAATGATATTGTTTCGGTCAATGTTCCTGAAAATGTAACTGGGGATGTTGCTGGAAACAAAAATCTAGCGTCAAATGTTCTTCAAGTATCACACTATTCAGTGCCCATGATATCTTCTCTGGTATTTGCATTTGTGACTGCTCTTTTTGCGTTGACATCCATAACTGCGGGGCTGCTTTCTATTTCAACTGCAAGCCTTCAATCCCTTTGGACATTTAGGAGAGCATCTTCTTTGGCATCTCATCCAGCAAGAAATCTTTTCAGAATTGCTTGTCATATTCAAATCTTTGCACTCTCTAGATGGTTGGCAGTTACATTGCCAGTTGATTATTATGAATTTGCAAGGGGTTTACAATGGAGTATTCCTTACTTTAATCTCCCATGGGAAGCTGGGAAAAGCTTCCAAGCCTCAATTCCTTCCACCAGCTCAAAGTCCTACAGGACTGAAGGCTATGATTCAGAAATTTTCAAAAGCATGCAACTAGAAGAAGAGAGTTCTAATAAGGTTACTTCAGTATATGGGTTGCCACTTACTCCAATGGAATACAGAATGTTTTTTGAGTTGGAGGGTGAAAATATTAAACCTGAAGCCGAATATCTCTCCAGTTCTTATAACTCGAACAGGTGGAGGAATTTCGATCGAAGCATGTTCTGGTTAGCGGTGATTAGTGGTAGTTTGATCCTAGTACATGTTTTACTCCTTTTCATTCTGAAACTGAGGAAGAAAAGTTCTGAGAGACAGAGAGGTTATGGAGCACTCACATTCCCAAGATTTGAGATATTTCTTGTAATTCTTGCATTACCTTGTATTTTTGAGGCCTCAGCTGCACTAGTTAGAGGAGGAGCTTCATCTGGAGTTATAGTTGGCAGTCTGTTGTTGGCTGTCACGTCTTTTCTGCTGCTAGTCTTGTTCCTTTTCCTCTCAATTGGCATTACATTTGGAAAGTTACTTCAATACAAGGAAGTACATCAAGAAGGCGAGAAATTTCTCTGGTTTCAAGATATTGTCCGAGTGACACTGGGTCCAGGAAAAAGAGGTCAGTGGACTTGGAAAAAAAAACCAAGCTCTGTATATCTAATCATTTTTGGCCCTCTCTTTGAAGATCTCAGAGGCCCCCCAAAGTACATGCTCTCTCAGATTTCTGTGGGCAATGCTCGCAAGCAAGGTGACCGTATTATTGACTCTGATGATGAAACAGAAGACGCAGAAGCACCTTTTATCCAGAAGGTGTTTGGAATACTCAGAATATACTACACACTATTAGAATGTTTGAAAAGGGTTTTTGTTGGGATCATGGCTGGTGTCTACATGGACAGATGGAACTCTAAAACTCCTTCAATTACCTTATTGTGCATAACCTCTTTTCAACTTTTCTTCCTCGTTCTTAAGAAGCCATTTATCAAGAAAAAGGTTCAGTTGGTTGAGATGATCTCGGTTTCCAGTGAAGTAGGTTTATTTGCAACTTGCTTGGTTCTCTTGGAGAAGGATTTTTCAGCCAGTGACAGAACTAAAGTTGGTATTTTCATGATAATACTGTTCTTAGTTGGATACATTGCACAGATGATTAATGAGTGGTATGCATTGTATAGACAAACATTGCTTCTGGACCCTGCCGAGAACTCCTTCTTAACTGGTTTGAAATTAGCTGTAACTGGCTGTCTCTTGTTATTCATCCCGCGGAATTTGATCAATAACTTGGAAAGCAAGTTCCAAGCGAGGCAACAGGTGGTGGAAGCAACAAGGGATTCTAGCTCTTCTGGGAACCGGAGCTCCGGGAGTAGGGGGACCACTCCAACTGATAAACCATGGCTAAAACAGCTGAGAGAGTTGGCAAAGTCTAGCTTTAGTAAAGAAGGAAGTAGTGGAGTTGCAAATGATCCTTCGAGCAGTAATACTCGAGCTAGATGGAGTGGGTTTTGGAGCAGCAAAAGGAGTGGGAGCTCATCTCAAAAGTCTTCTAGTGATTCCAAATCAAAATCAAGGTTGTACAATGACTTGGAGGCTATTTTTGCATCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

1083

Amino Acids

119.83

Weight (kDa)

9.22

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Big_12	PF19078	346 - 437	1e-05	Bacterial Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1842
AarI	CACCTGC	1 cut(s)	485
Acc36I	ACCTGC	2 cut(s)	485, 492
AccI	GTMKAC	1 cut(s)	2535
AccII	CGCG	2 cut(s)	667, 2908
AciI	CCGC	6 cut(s)	444, 923, 1397, 1889, 2906, 2908
AclWI	GGATC	4 cut(s)	592, 1903, 2528, 3101
AcsI	RAATTY	9 cut(s)	661, 840, 973, 1115, 1565, 1692, 1861, 2213, 2911
AcuI	CTGAAG	4 cut(s)	722, 1695, 1725, 1836
AfaI	GTAC	9 cut(s)	257, 354, 678, 1066, 1208, 1917, 2196, 2354, 3218
AfiI	CCNNNNNNNGG	5 cut(s)	607, 711, 993, 1133, 3009
AflII	CTTAAG	1 cut(s)	2615
AflIII	ACRYGT	1 cut(s)	1918
AhdI	GACNNNNNGTC	1 cut(s)	2250
AhlI	ACTAGT	1 cut(s)	2059
AjiI	CACGTC	1 cut(s)	2118
AjnI	CCWGG	2 cut(s)	600, 2254
AjuI	GAANNNNNNNTTGG	6 cut(s)	147, 179, 182, 214, 1626, 1658
AloI	GAACNNNNNNTCC	6 cut(s)	1942, 1974, 2921, 2953, 2984, 3016
Alw21I	GWGCWC	3 cut(s)	1987, 3002, 3173
Alw26I	GTCTC	3 cut(s)	94, 1960, 2894
AlwI	GGATC	4 cut(s)	592, 1903, 2528, 3101
AlwNI	CAGNNNCTG	3 cut(s)	74, 368, 818
Ama87I	CYCGRG	1 cut(s)	3126
AoxI	GGCC	4 cut(s)	1046, 2046, 2317, 2341
ApeKI	GCWGC	4 cut(s)	1402, 2054, 2128, 3153
ApoI	RAATTY	9 cut(s)	661, 840, 973, 1115, 1565, 1692, 1861, 2213, 2911
AseI	ATTAAT	3 cut(s)	1109, 1230, 2796
Asp700I	GAANNNNTTC	2 cut(s)	1628, 2852
AspS9I	GGNCC	5 cut(s)	2252, 2318, 2342, 2836, 3015
AsuC2I	CCSGG	1 cut(s)	3004
AsuHPI	GGTGA	6 cut(s)	761, 970, 1008, 1811, 1903, 2408
AsuII	TTCGAA	1 cut(s)	230
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	3126
AvaII	GGWCC	3 cut(s)	2252, 2836, 3015
AxyI	CCTNAGG	1 cut(s)	710
BaeGI	GKGCMC	1 cut(s)	1335
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BanII	GRGCYC	2 cut(s)	3002, 3173
BbsI	GAAGAC	4 cut(s)	697, 1098, 2436, 3177
Bbv12I	GWGCWC	3 cut(s)	1987, 3002, 3173
BbvCI	CCTCAGC	1 cut(s)	2050
BbvI	GCAGC	4 cut(s)	1389, 2041, 2115, 3165
BccI	CCATC	6 cut(s)	212, 266, 523, 1524, 2541, 3129
BceAI	ACGGC	1 cut(s)	457
BciT130I	CCWGG	2 cut(s)	602, 2256
BciVI	GTATCC	1 cut(s)	2771
BclI	TGATCA	1 cut(s)	2916
BcnI	CCSGG	1 cut(s)	3004
BcoDI	GTCTC	3 cut(s)	94, 1960, 2894
BcuI	ACTAGT	1 cut(s)	2059
BfmI	CTRYAG	2 cut(s)	1050, 1666
BfrI	CTTAAG	1 cut(s)	2615
BfuAI	ACCTGC	2 cut(s)	485, 492
BfuI	GTATCC	1 cut(s)	2771
BglII	AGATCT	2 cut(s)	383, 2332
BisI	GCNGC	4 cut(s)	1403, 2055, 2129, 3154
BlsI	GCNGC	4 cut(s)	1404, 2056, 2130, 3155
Bme1390I	CCNGG	3 cut(s)	602, 2256, 3004
Bme18I	GGWCC	3 cut(s)	2252, 2836, 3015
BmeRI	GACNNNNNGTC	1 cut(s)	2250
BmeT110I	CYCGRG	1 cut(s)	3126
BmgBI	CACGTC	1 cut(s)	2118
BmgT120I	GGNCC	5 cut(s)	2252, 2318, 2342, 2836, 3015
BmiI	GGNNCC	6 cut(s)	537, 2253, 2344, 2838, 2993, 3016
BmrFI	CCNGG	3 cut(s)	602, 2256, 3004
BmrI	ACTGGG	3 cut(s)	252, 1278, 2258
BmsI	GCATC	4 cut(s)	374, 449, 1463, 1475
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	3 cut(s)	252, 1278, 2258
BpiI	GAAGAC	4 cut(s)	697, 1098, 2436, 3177
BplI	GAGNNNNNCTC	4 cut(s)	2645, 2677, 3160, 3192
BpmI	CTGGAG	4 cut(s)	554, 984, 1816, 2103
Bpu10I	CCTNAGC	1 cut(s)	2050
Bpu14I	TTCGAA	1 cut(s)	230
BpuEI	CTTGAG	3 cut(s)	294, 364, 1057
BpuMI	CCSGG	1 cut(s)	3004
BsaBI	GATNNNNATC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	1610, 2906, 3035
BsaWI	WCCGGW	2 cut(s)	880, 2994
BsaXI	ACNNNNNCTCC	4 cut(s)	2076, 2106, 2984, 3014
Bsc4I	CCNNNNNNNGG	5 cut(s)	607, 711, 993, 1133, 3009
Bse21I	CCTNAGG	1 cut(s)	710
Bse3DI	GCAATG	5 cut(s)	942, 1544, 2386, 2781, 2825
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	2 cut(s)	602, 2256
BseDI	CCNNGG	3 cut(s)	1610, 2906, 3035
BseGI	GGATG	7 cut(s)	277, 464, 1279, 1385, 1471, 2901, 3242
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	5 cut(s)	607, 711, 993, 1133, 3009
BseMI	GCAATG	5 cut(s)	942, 1544, 2386, 2781, 2825
BseRI	GAGGAG	4 cut(s)	102, 462, 2082, 2085
BseSI	GKGCMC	1 cut(s)	1335
BseXI	GCAGC	4 cut(s)	1389, 2041, 2115, 3165
BseYI	CCCAGC	1 cut(s)	1619
BsgI	GTGCAG	4 cut(s)	280, 785, 819, 2040
Bsh1236I	CGCG	2 cut(s)	667, 2908
Bsh1285I	CGRYCG	1 cut(s)	1870
BshFI	GGCC	4 cut(s)	1048, 2048, 2319, 2343
BsiEI	CGRYCG	1 cut(s)	1870
BsiHKAI	GWGCWC	3 cut(s)	1987, 3002, 3173
BsiHKCI	CYCGRG	1 cut(s)	3126
BsiSI	CCGG	3 cut(s)	881, 2995, 3003
BslFI	GGGAC	3 cut(s)	319, 1009, 3028
BslI	CCNNNNNNNGG	5 cut(s)	607, 711, 993, 1133, 3009
BsmAI	GTCTC	3 cut(s)	94, 1960, 2894
BsmFI	GGGAC	3 cut(s)	319, 1009, 3028
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	1048, 2048, 2319, 2343
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	3126
Bsp119I	TTCGAA	1 cut(s)	230
Bsp1286I	GDGCHC	4 cut(s)	1335, 1987, 3002, 3173
Bsp1407I	TGTACA	2 cut(s)	1206, 3216
Bsp143I	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
Bsp19I	CCATGG	2 cut(s)	1610, 3035
BspACI	CCGC	6 cut(s)	444, 923, 1397, 1889, 2906, 2908
BspANI	GGCC	4 cut(s)	1048, 2048, 2319, 2343
BspFNI	CGCG	2 cut(s)	667, 2908
BspHI	TCATGA	1 cut(s)	2754
BspLI	GGNNCC	6 cut(s)	537, 2253, 2344, 2838, 2993, 3016
BspMAI	CTGCAG	1 cut(s)	1054
BspMI	ACCTGC	2 cut(s)	485, 492
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	4 cut(s)	592, 1903, 2528, 3101
BspQI	GCTCTTC	1 cut(s)	2989
BspT104I	TTCGAA	1 cut(s)	230
BspTI	CTTAAG	1 cut(s)	2615
BspTNI	GGTCTC	1 cut(s)	94
BsrDI	GCAATG	5 cut(s)	942, 1544, 2386, 2781, 2825
BsrGI	TGTACA	2 cut(s)	1206, 3216
BssECI	CCNNGG	3 cut(s)	1610, 2906, 3035
BssMI	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
BssT1I	CCWWGG	2 cut(s)	1610, 3035
Bst2UI	CCWGG	2 cut(s)	602, 2256
Bst4CI	ACNGT	7 cut(s)	343, 352, 763, 958, 1213, 2402, 2766
Bst6I	CTCTTC	3 cut(s)	1150, 1713, 2989
BstAFI	CTTAAG	1 cut(s)	2615
BstAPI	GCANNNNNTGC	1 cut(s)	192
BstAUI	TGTACA	2 cut(s)	1206, 3216
BstBI	TTCGAA	1 cut(s)	230
BstC8I	GCNNGC	9 cut(s)	178, 209, 502, 768, 1050, 1423, 1706, 2386, 2390
BstDSI	CCRYGG	3 cut(s)	1610, 2906, 3035
BstEII	GGTNACC	1 cut(s)	2396
BstF5I	GGATG	7 cut(s)	277, 464, 1279, 1385, 1471, 2901, 3242
BstFNI	CGCG	2 cut(s)	667, 2908
BstKTI	GATC	9 cut(s)	386, 600, 1870, 1911, 2335, 2523, 2661, 2919, 3109
BstMAI	GTCTC	3 cut(s)	94, 1960, 2894
BstMBI	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
BstMCI	CGRYCG	1 cut(s)	1870
BstNI	CCWGG	2 cut(s)	602, 2256
BstNSI	RCATGY	5 cut(s)	186, 1708, 1879, 1922, 2359
BstPI	GGTNACC	1 cut(s)	2396
BstSCI	CCNGG	3 cut(s)	600, 2254, 3002
BstSFI	CTRYAG	2 cut(s)	1050, 1666
BstSLI	GKGCMC	1 cut(s)	1335
BstUI	CGCG	2 cut(s)	667, 2908
BstV1I	GCAGC	4 cut(s)	1389, 2041, 2115, 3165
BstV2I	GAAGAC	4 cut(s)	697, 1098, 2436, 3177
BstX2I	RGATCY	2 cut(s)	383, 2332
BstYI	RGATCY	2 cut(s)	383, 2332
Bsu36I	CCTNAGG	1 cut(s)	710
BsuI	GTATCC	1 cut(s)	2771
BsuRI	GGCC	4 cut(s)	1048, 2048, 2319, 2343
BtgI	CCRYGG	3 cut(s)	1610, 2906, 3035
BtrI	CACGTC	1 cut(s)	2118
BtsCI	GGATG	7 cut(s)	277, 464, 1279, 1385, 1471, 2901, 3242
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	9 cut(s)	433, 768, 1059, 1209, 1335, 2246, 2276, 2677, 2734
BveI	ACCTGC	2 cut(s)	485, 492
Cac8I	GCNNGC	9 cut(s)	178, 209, 502, 768, 1050, 1423, 1706, 2386, 2390
CaiI	CAGNNNCTG	3 cut(s)	74, 368, 818
CciI	TCATGA	1 cut(s)	2754
Cfr13I	GGNCC	5 cut(s)	2252, 2318, 2342, 2836, 3015
Cfr42I	CCGCGG	1 cut(s)	2909
CseI	GACGC	2 cut(s)	1287, 2441
Csp6I	GTAC	9 cut(s)	256, 353, 677, 1065, 1207, 1916, 2195, 2353, 3217
CspCI	CAANNNNNGTGG	2 cut(s)	3145, 3180
CviQI	GTAC	9 cut(s)	256, 353, 677, 1065, 1207, 1916, 2195, 2353, 3217
DpnI	GATC	9 cut(s)	385, 599, 1869, 1910, 2334, 2522, 2660, 2918, 3108
DpnII	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
DraI	TTTAAA	1 cut(s)	846
DriI	GACNNNNNGTC	1 cut(s)	2250
Eam1104I	CTCTTC	3 cut(s)	1150, 1713, 2989
Eam1105I	GACNNNNNGTC	1 cut(s)	2250
EarI	CTCTTC	3 cut(s)	1150, 1713, 2989
EciI	GGCGGA	1 cut(s)	459
Ecl136II	GAGCTC	2 cut(s)	3000, 3171
Eco130I	CCWWGG	2 cut(s)	1610, 3035
Eco147I	AGGCCT	2 cut(s)	1048, 2048
Eco24I	GRGCYC	2 cut(s)	3002, 3173
Eco31I	GGTCTC	1 cut(s)	94
Eco32I	GATATC	1 cut(s)	1341
Eco47I	GGWCC	3 cut(s)	2252, 2836, 3015
Eco53kI	GAGCTC	2 cut(s)	3000, 3171
Eco57I	CTGAAG	4 cut(s)	722, 1695, 1725, 1836
Eco81I	CCTNAGG	1 cut(s)	710
Eco88I	CYCGRG	1 cut(s)	3126
Eco91I	GGTNACC	1 cut(s)	2396
EcoICRI	GAGCTC	2 cut(s)	3000, 3171
EcoO109I	RGGNCCY	1 cut(s)	2342
EcoO65I	GGTNACC	1 cut(s)	2396
EcoRII	CCWGG	2 cut(s)	600, 2254
EcoRV	GATATC	1 cut(s)	1341
EcoT14I	CCWWGG	2 cut(s)	1610, 3035
EcoT22I	ATGCAT	2 cut(s)	121, 2812
EcoT38I	GRGCYC	2 cut(s)	3002, 3173
ErhI	CCWWGG	2 cut(s)	1610, 3035
FalI	AAGNNNNNCTT	2 cut(s)	3056, 3088
FaqI	GGGAC	3 cut(s)	319, 1009, 3028
FauI	CCCGC	2 cut(s)	1390, 2913
FbaI	TGATCA	1 cut(s)	2916
FblI	GTMKAC	1 cut(s)	2535
Fnu4HI	GCNGC	4 cut(s)	1403, 2055, 2129, 3154
FokI	GGATG	7 cut(s)	284, 471, 1286, 1372, 1458, 2888, 3229
FriOI	GRGCYC	2 cut(s)	3002, 3173
Fsp4HI	GCNGC	4 cut(s)	1403, 2055, 2129, 3154
GluI	GCNGC	4 cut(s)	1403, 2055, 2129, 3154
GsaI	CCCAGC	1 cut(s)	1623
GsuI	CTGGAG	4 cut(s)	554, 984, 1816, 2103
HaeIII	GGCC	4 cut(s)	1048, 2048, 2319, 2343
HapII	CCGG	3 cut(s)	881, 2995, 3003
HgaI	GACGC	2 cut(s)	1287, 2441
HincII	GTYRAC	1 cut(s)	1383
HindII	GTYRAC	1 cut(s)	1383
HindIII	AAGCTT	3 cut(s)	156, 1180, 1627
HpaII	CCGG	3 cut(s)	881, 2995, 3003
HphI	GGTGA	6 cut(s)	761, 970, 1008, 1811, 1903, 2408
Hpy166II	GTNNAC	7 cut(s)	472, 583, 1209, 1383, 1580, 2274, 2536
Hpy8I	GTNNAC	7 cut(s)	472, 583, 1209, 1383, 1580, 2274, 2536
HpyCH4III	ACNGT	7 cut(s)	343, 352, 763, 958, 1213, 2402, 2766
HpyCH4IV	ACGT	1 cut(s)	2117
HpySE526I	ACGT	1 cut(s)	2117
Ksp22I	TGATCA	1 cut(s)	2916
KspI	CCGCGG	1 cut(s)	2909
Kzo9I	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
LguI	GCTCTTC	1 cut(s)	2989
LmnI	GCTCC	8 cut(s)	115, 535, 1982, 2072, 2997, 3005, 3150, 3168
Lsp1109I	GCAGC	4 cut(s)	1389, 2041, 2115, 3165
LweI	GCATC	4 cut(s)	374, 449, 1463, 1475
MaeII	ACGT	1 cut(s)	2117
MalI	GATC	9 cut(s)	385, 599, 1869, 1910, 2334, 2522, 2660, 2918, 3108
MboI	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
MfeI	CAATTG	2 cut(s)	190, 2154
MflI	RGATCY	2 cut(s)	383, 2332
MhlI	GDGCHC	4 cut(s)	1335, 1987, 3002, 3173
MlyI	GAGTC	4 cut(s)	80, 301, 991, 2405
MmeI	TCCRAC	4 cut(s)	729, 1773, 2755, 3047
Mph1103I	ATGCAT	2 cut(s)	121, 2812
MroXI	GAANNNNTTC	2 cut(s)	1628, 2852
MslI	CAYNNNNRTG	1 cut(s)	3247
MspA1I	CMGCKG	3 cut(s)	2054, 2908, 3049
MspCI	CTTAAG	1 cut(s)	2615
MspI	CCGG	3 cut(s)	881, 2995, 3003
MspR9I	CCNGG	3 cut(s)	602, 2256, 3004
MunI	CAATTG	2 cut(s)	190, 2154
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	602, 2256
MvnI	CGCG	2 cut(s)	667, 2908
NciI	CCSGG	1 cut(s)	3004
NcoI	CCATGG	2 cut(s)	1610, 3035
NdeII	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
NheI	GCTAGC	1 cut(s)	176
NlaIV	GGNNCC	6 cut(s)	537, 2253, 2344, 2838, 2993, 3016
NmeAIII	GCCGAG	1 cut(s)	2869
NmuCI	GTSAC	5 cut(s)	1363, 2113, 2242, 2396, 2729
NsiI	ATGCAT	2 cut(s)	121, 2812
NspI	RCATGY	5 cut(s)	186, 1708, 1879, 1922, 2359
NspV	TTCGAA	1 cut(s)	230
PaeI	GCATGC	1 cut(s)	1708
PaeR7I	CTCGAG	1 cut(s)	3126
PagI	TCATGA	1 cut(s)	2754
PaqCI	CACCTGC	1 cut(s)	485
PceI	AGGCCT	2 cut(s)	1048, 2048
PciI	ACATGT	1 cut(s)	1918
PciSI	GCTCTTC	1 cut(s)	2989
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	1628, 2852
PfeI	GAWTC	8 cut(s)	431, 645, 715, 968, 1037, 1685, 2975, 3194
PfoI	TCCNGGA	2 cut(s)	2254, 3002
PkrI	GCNGC	4 cut(s)	1404, 2056, 2130, 3155
Ple19I	CGATCG	1 cut(s)	1870
PleI	GAGTC	4 cut(s)	79, 301, 991, 2405
PpsI	GAGTC	4 cut(s)	79, 301, 991, 2405
PscI	ACATGT	1 cut(s)	1918
PshBI	ATTAAT	3 cut(s)	1109, 1230, 2796
PsiI	TTATAA	1 cut(s)	1842
Psp124BI	GAGCTC	2 cut(s)	3002, 3173
Psp6I	CCWGG	2 cut(s)	600, 2254
PspEI	GGTNACC	1 cut(s)	2396
PspFI	CCCAGC	1 cut(s)	1619
PspGI	CCWGG	2 cut(s)	600, 2254
PspN4I	GGNNCC	6 cut(s)	537, 2253, 2344, 2838, 2993, 3016
PspPI	GGNCC	5 cut(s)	2252, 2318, 2342, 2836, 3015
PspXI	VCTCGAGB	1 cut(s)	3126
PstI	CTGCAG	1 cut(s)	1054
PstNI	CAGNNNCTG	3 cut(s)	74, 368, 818
PsuI	RGATCY	2 cut(s)	383, 2332
PvuI	CGATCG	1 cut(s)	1870
PvuII	CAGCTG	2 cut(s)	2054, 3049
RsaI	GTAC	9 cut(s)	257, 354, 678, 1066, 1208, 1917, 2196, 2354, 3218
RsaNI	GTAC	9 cut(s)	256, 353, 677, 1065, 1207, 1916, 2195, 2353, 3217
RseI	CAYNNNNRTG	1 cut(s)	3247
SacI	GAGCTC	2 cut(s)	3002, 3173
SacII	CCGCGG	1 cut(s)	2909
SapI	GCTCTTC	1 cut(s)	2989
SatI	GCNGC	4 cut(s)	1403, 2055, 2129, 3154
Sau3AI	GATC	9 cut(s)	383, 597, 1867, 1908, 2332, 2520, 2658, 2916, 3106
Sau96I	GGNCC	5 cut(s)	2252, 2318, 2342, 2836, 3015
SchI	GAGTC	4 cut(s)	80, 301, 991, 2405
ScrFI	CCNGG	3 cut(s)	602, 2256, 3004
SduI	GDGCHC	4 cut(s)	1335, 1987, 3002, 3173
SfaNI	GCATC	4 cut(s)	374, 449, 1463, 1475
SfcI	CTRYAG	2 cut(s)	1050, 1666
Sfr274I	CTCGAG	1 cut(s)	3126
Sfr303I	CCGCGG	1 cut(s)	2909
SfuI	TTCGAA	1 cut(s)	230
SgrBI	CCGCGG	1 cut(s)	2909
SinI	GGWCC	3 cut(s)	2252, 2836, 3015
SlaI	CTCGAG	1 cut(s)	3126
SmiMI	CAYNNNNRTG	1 cut(s)	3247
SmlI	CTYRAG	5 cut(s)	309, 379, 1072, 2615, 3126
SmoI	CTYRAG	5 cut(s)	309, 379, 1072, 2615, 3126
SpeI	ACTAGT	1 cut(s)	2059
SphI	GCATGC	1 cut(s)	1708
SseBI	AGGCCT	2 cut(s)	1048, 2048
SsiI	CCGC	6 cut(s)	444, 923, 1397, 1889, 2906, 2908
SspI	AATATT	4 cut(s)	418, 529, 551, 1807
SstI	GAGCTC	2 cut(s)	3002, 3173
StuI	AGGCCT	2 cut(s)	1048, 2048
StyD4I	CCNGG	3 cut(s)	600, 2254, 3002
StyI	CCWWGG	2 cut(s)	1610, 3035
TaaI	ACNGT	7 cut(s)	343, 352, 763, 958, 1213, 2402, 2766
TaiI	ACGT	1 cut(s)	2120
TaqI	TCGA	9 cut(s)	230, 757, 966, 1035, 1847, 1866, 1870, 3113, 3127
TaqII	GACCGA	1 cut(s)	1234
TatI	WGTACW	7 cut(s)	255, 1064, 1206, 1915, 2194, 2352, 3216
TfiI	GAWTC	8 cut(s)	431, 645, 715, 968, 1037, 1685, 2975, 3194
TscAI	CASTG	9 cut(s)	433, 768, 1059, 1216, 1335, 2253, 2276, 2677, 2734
TseFI	GTSAC	5 cut(s)	1363, 2113, 2242, 2396, 2729
TseI	GCWGC	4 cut(s)	1402, 2054, 2128, 3153
Tsp45I	GTSAC	5 cut(s)	1363, 2113, 2242, 2396, 2729
TspDTI	ATGAA	9 cut(s)	9, 707, 1108, 1578, 1924, 2067, 2436, 2743, 2890
TspRI	CASTG	9 cut(s)	433, 768, 1059, 1216, 1335, 2253, 2276, 2677, 2734
Vha464I	CTTAAG	1 cut(s)	2615
VpaK11BI	GGWCC	3 cut(s)	2252, 2836, 3015
VspI	ATTAAT	3 cut(s)	1109, 1230, 2796
XapI	RAATTY	9 cut(s)	661, 840, 973, 1115, 1565, 1692, 1861, 2213, 2911
XbaI	TCTAGA	1 cut(s)	1526
XceI	RCATGY	5 cut(s)	186, 1708, 1879, 1922, 2359
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2459
XhoI	CTCGAG	1 cut(s)	3126
XmiI	GTMKAC	1 cut(s)	2535
XmnI	GAANNNNTTC	2 cut(s)	1628, 2852
Zsp2I	ATGCAT	2 cut(s)	121, 2812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.