Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

3415754 .. 3421837

Gene Structure 6084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G029000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2496 bp

ATGTATGGGGATTGCCAAGTAATGTCAACCATGGGAGGTGGGAACGTAGTCACCTCGGAAACCCTCTTTTCATCTCCGATCCAAAACCCTAACTTCAACTTCATGCCTTCCCAGCTCCCTTTCCAACCTTTCTCTTCCATCATCAATCCTAAAGAAGAAAACGGGCTGCTGATGAGAGGCAAGGAGGAGATGATGGAGAGTGGTTCTGGAAGTGAGCAAGTTGAAGAAAAGTCTGGAAACGAGCAAGAGGCTGATCAACTTCAACAGCCCCCTAAGAAGAAACGCTATCATCGCCACACTGCTCATCAGATCCAAGAAATGGAGAATTTGTTTAAGGAGTGTCCTCACCCAGACGACAAGCAGAGGCAAAAACTGAGCCAGGAGCTGGGACTGAAGCCACGCCAGGTCAAGTTTTGGTTCCAAAACCGACGAACTCAAATGAAGGCACAACAAGACCGGTCGGATAATGTGATGCTTAGAGCAGAAAATGATAGCCTGAAGAACGAGAATTACCGGCTACAGACGGCGCTGCGCAATATTATATGCCCTAATTGTGGAGGACCATCTATGATTGCGGACATTGGCTTGGATGAACAACAACTTCGACTTGAGAATGCTCGACTCAGAGAAGAGTTGGAACGAGTTTGTTGTCTGAGTTCACGATATACTACTGGCCGGCAAATCCAAACAATGGCACCTGGAGATCCTCTCATGTCAGCATCCAGTTTGGATTTGGATATGAACATCTATTCAAGGCATTTCCAAGACCCAATGACTTCTTGTGGGGACATGATCCCCATGCCTTTGTTGCCACCAGAAGTGCCTTCCCACTACAATGAGGGTGGTGTATTGTTAGATGAGGAAAAGTCTCTTGCAGTGGAGCTTGCCGCTTCATCGGTGGATGAACTTGTTAAGATGTGCCAGGCTGGTGAGCCTCTTTGGATCCGGAACAGTGAAATTGGGAAGGAAGTGCTTAATGTTAAAGAATATACCCGGATGTTCCCACCGTGGCCTTTGAACCTCAAGCACCACTCAAGTGATCAGTTTAGGACAGAAGCTACTCGTGATAGTGCTGTGGTTATCATGAATAGCATCAATCTTGTAGATTGCTTCCTTGATGCTAATAAGTGGATGGAGCTGTTTCCTTCTATTGTTTCTAGAGCCAAAACTGTTCAAGTTATTCAAGCAGACCCCTCTGGTCAAGCAAATGGTTCTCTTCAGCTGATGTATGCCGAATTGCAAATTCTTTCTCCTCTGGTGCCAACTAGAGAAGCACATTTTCTACGTTATTGTCAACAAAATGCGGAGGAGGGATGTTGGGCAATTGTAGATTTTCCCATAGATAGCTTCCATGACAACCTCCAGTCGTCGTTTCCCCGATACAAGAGATTGCCCTCCGGCTGCCTTATCCAAGACATGCCCAATGGATACTCAAAAATTACATGGGTAGAACATGCAGAGATAGAGGAGAAGCCTGTCCACCAAATATTGAGCCACTATATCTACAGTGGGATGGCTTTCGGGGCGCAACGCTGGCTTGCAATCTTACAAAGGCAGTGTGAAAGGGTTGCAAGTCTCATGGCCAGAAATATATCAGACCTTGGAGTGATACCTTCCCCAGAAGCACGAAAGAATTTGATGAAACTGTCACAGAGAATGATAAGAACATTTTGTGTAAACATGAGCACCTCCAATGGGCAGTCATGGACGGCTCTATCTGATTCCCCAGACGACACTGTTAGAATAACCACAAGGAAGGTCACAGACCCTGGTCAACCCATTGGTGTTATTCTCAGTGCTGTGTCCACAACCTGGCTCCCATATTCTCACTACCGTGTCTTCGAACTCCTACGGGACGAACATCGCAGAGCTCAGCTTGATGTTCTTTCCAATGGGAATTCCTTGCACGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGCAATTGCATTTCTCTTCTTCGCATAAACGTAGCTAGCAACTCAGCACAGAACGTAGAGCTAATGCTACAAGAGAGCTGCACCGACGAGTCGGGCAGCCTTGTGGTGTACACAACCATGGACGTGGACGGCATCCAATTGGCAATGAGTGGAGAGGACCCTTCCTGCATTCCCCTCCTTCCTCTCGGCTTTGTCATTGTCCCACTGCACCCTATGGAATCTACCGGTCCAACACCCAATCACCTCACCTCATCATCGCCAGATCATCGTCAAGAAGACAGCACTGCCACCACCACCACGACCAGCAATGTTATCAACTCAGGTTGTCTGCTGACTGTGGGACTCCAAGTCCTTGCCAGCACAAGTCCTTCCGCAAAACTCAACCTCTCCAGCGTCACCGCCATTAACAACCATCTCTGCAACTCGGTGCAGCAGATTATCTCCGCTCTCAGTAGCGGCAGCGACACGTGCATTGCCGCTGCTACAACTGAGAATGGCAGCGTTGGTGGCGGCGCCTCTTGCTCCGACCCAACTGCTTCCAGCCCCAGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

832

Amino Acids

92.22

Weight (kDa)

5.42

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	533
AccB1I	GGYRCC	3 cut(s)	694, 1258, 2453
AccB7I	CCANNNNNTGG	4 cut(s)	319, 385, 691, 1812
AccBSI	CCGCTC	1 cut(s)	2387
AccIII	TCCGGA	1 cut(s)	945
AciI	CCGC	9 cut(s)	575, 888, 1304, 2313, 2340, 2385, 2397, 2418, 2451
AclWI	GGATC	6 cut(s)	73, 304, 698, 787, 937, 950
AcoI	YGGCCR	2 cut(s)	673, 1581
AcsI	RAATTY	4 cut(s)	325, 1242, 1633, 1897
AcuI	CTGAAG	3 cut(s)	413, 518, 1202
AcvI	CACGTG	1 cut(s)	2409
AcyI	GRCGYC	1 cut(s)	2454
AdeI	CACNNNGTG	1 cut(s)	1912
AfaI	GTAC	1 cut(s)	2051
AfiI	CCNNNNNNNGG	7 cut(s)	319, 385, 554, 691, 1695, 1812, 2487
AflIII	ACRYGT	1 cut(s)	2406
AgeI	ACCGGT	2 cut(s)	456, 2165
AgsI	TTSAA	7 cut(s)	97, 224, 263, 753, 1018, 1175, 1184
AhdI	GACNNNNNGTC	1 cut(s)	2288
AjiI	CACGTC	1 cut(s)	2065
AjnI	CCWGG	8 cut(s)	378, 402, 697, 921, 1768, 1811, 1939, 2486
AleI	CACNNNNGTG	2 cut(s)	1035, 1833
Alw21I	GWGCWC	2 cut(s)	1688, 1873
Alw26I	GTCTC	2 cut(s)	873, 1580
AlwI	GGATC	6 cut(s)	73, 304, 698, 787, 937, 950
AlwNI	CAGNNNCTG	2 cut(s)	385, 1769
Aor13HI	TCCGGA	1 cut(s)	945
AoxI	GGCC	3 cut(s)	673, 1010, 1581
ApeKI	GCWGC	9 cut(s)	166, 529, 1401, 2019, 2037, 2371, 2400, 2420, 2439
ApoI	RAATTY	4 cut(s)	325, 1242, 1633, 1897
AsiGI	ACCGGT	2 cut(s)	456, 2165
AspLEI	GCGC	4 cut(s)	529, 534, 1528, 2456
AspS9I	GGNCC	3 cut(s)	560, 2098, 2168
AsuC2I	CCSGG	1 cut(s)	994
AsuHPI	GGTGA	6 cut(s)	43, 338, 941, 2174, 2179, 2329
AsuII	TTCGAA	1 cut(s)	1842
AsuNHI	GCTAGC	1 cut(s)	1976
AvaII	GGWCC	3 cut(s)	560, 2098, 2168
BalI	TGGCCA	1 cut(s)	1583
BamHI	GGATCC	1 cut(s)	942
BanI	GGYRCC	3 cut(s)	694, 1258, 2453
BanII	GRGCYC	1 cut(s)	1873
BauI	CACGAG	1 cut(s)	1062
BbrPI	CACGTG	1 cut(s)	2409
BbsI	GAAGAC	2 cut(s)	1831, 2223
Bbv12I	GWGCWC	2 cut(s)	1688, 1873
BbvI	GCAGC	9 cut(s)	153, 516, 1388, 2006, 2049, 2383, 2407, 2412, 2451
BccI	CCATC	6 cut(s)	146, 187, 571, 1126, 1507, 2361
BceAI	ACGGC	3 cut(s)	540, 1725, 2086
BcgI	CGANNNNNNTGC	2 cut(s)	2456, 2490
BciT130I	CCWGG	8 cut(s)	380, 404, 699, 923, 1770, 1813, 1941, 2488
BciVI	GTATCC	1 cut(s)	1421
BclI	TGATCA	2 cut(s)	253, 1039
BcnI	CCSGG	1 cut(s)	994
BcoDI	GTCTC	2 cut(s)	873, 1580
BfaI	CTAG	3 cut(s)	1158, 1266, 1977
BfmI	CTRYAG	2 cut(s)	518, 1504
BfoI	RGCGCY	2 cut(s)	530, 2457
BfuI	GTATCC	1 cut(s)	1421
BlpI	GCTNAGC	1 cut(s)	1872
Bme1390I	CCNGG	9 cut(s)	380, 404, 699, 923, 994, 1770, 1813, 1941, 2488
Bme18I	GGWCC	3 cut(s)	560, 2098, 2168
BmeRI	GACNNNNNGTC	1 cut(s)	2288
BmgBI	CACGTC	1 cut(s)	2065
BmgT120I	GGNCC	3 cut(s)	560, 2098, 2168
BmiI	GGNNCC	7 cut(s)	419, 696, 944, 1260, 1817, 2100, 2455
BmrFI	CCNGG	9 cut(s)	380, 404, 699, 923, 994, 1770, 1813, 1941, 2488
BmsI	GCATC	5 cut(s)	462, 728, 1101, 1108, 2082
BmtI	GCTAGC	1 cut(s)	1980
BoxI	GACNNNNGTC	1 cut(s)	1770
BpiI	GAAGAC	2 cut(s)	1831, 2223
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
BpmI	CTGGAG	3 cut(s)	720, 1346, 2314
Bpu1102I	GCTNAGC	1 cut(s)	1872
Bpu14I	TTCGAA	1 cut(s)	1842
BpuEI	CTTGAG	3 cut(s)	629, 1007, 1018
BpuMI	CCSGG	1 cut(s)	994
BsaAI	YACGTR	1 cut(s)	2409
BsaHI	GRCGYC	1 cut(s)	2454
BsaJI	CCNNGG	7 cut(s)	30, 54, 1007, 1600, 1768, 2058, 2486
BsaWI	WCCGGW	3 cut(s)	456, 945, 2165
BsaXI	ACNNNNNCTCC	2 cut(s)	314, 344
Bsc4I	CCNNNNNNNGG	7 cut(s)	319, 385, 554, 691, 1695, 1812, 2487
Bse118I	RCCGGY	4 cut(s)	456, 513, 675, 2165
Bse1I	ACTGG	3 cut(s)	676, 723, 1363
Bse3DI	GCAATG	4 cut(s)	1920, 2091, 2254, 2412
BseAI	TCCGGA	1 cut(s)	945
BseBI	CCWGG	8 cut(s)	380, 404, 699, 923, 1770, 1813, 1941, 2488
BseDI	CCNNGG	7 cut(s)	30, 54, 1007, 1600, 1768, 2058, 2486
BseGI	GGATG	9 cut(s)	595, 719, 907, 1002, 1137, 1319, 1518, 1936, 2073
BseLI	CCNNNNNNNGG	7 cut(s)	319, 385, 554, 691, 1695, 1812, 2487
BseMI	GCAATG	4 cut(s)	1920, 2091, 2254, 2412
BseMII	CTCAG	9 cut(s)	365, 637, 644, 1807, 1886, 1998, 2274, 2404, 2421
BseNI	ACTGG	3 cut(s)	676, 723, 1363
BseRI	GAGGAG	4 cut(s)	200, 1242, 1322, 1481
BseXI	GCAGC	9 cut(s)	153, 516, 1388, 2006, 2049, 2383, 2407, 2412, 2451
BseYI	CCCAGC	2 cut(s)	111, 385
BsgI	GTGCAG	3 cut(s)	2005, 2132, 2390
Bsh1285I	CGRYCG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	675, 1012, 1583
BshNI	GGYRCC	3 cut(s)	694, 1258, 2453
BshTI	ACCGGT	2 cut(s)	456, 2165
BsiEI	CGRYCG	1 cut(s)	461
BsiHKAI	GWGCWC	2 cut(s)	1688, 1873
BsiSI	CCGG	7 cut(s)	457, 514, 676, 946, 994, 1398, 2166
BslFI	GGGAC	5 cut(s)	402, 800, 1868, 2126, 2295
BslI	CCNNNNNNNGG	7 cut(s)	319, 385, 554, 691, 1695, 1812, 2487
BsmAI	GTCTC	2 cut(s)	873, 1580
BsmFI	GGGAC	5 cut(s)	402, 800, 1868, 2126, 2295
BsmI	GAATGC	2 cut(s)	619, 2109
BsnI	GGCC	3 cut(s)	675, 1012, 1583
Bsp119I	TTCGAA	1 cut(s)	1842
Bsp1286I	GDGCHC	2 cut(s)	1688, 1873
Bsp13I	TCCGGA	1 cut(s)	945
Bsp1407I	TGTACA	1 cut(s)	2049
Bsp143I	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
Bsp1720I	GCTNAGC	1 cut(s)	1872
Bsp19I	CCATGG	2 cut(s)	30, 2058
BspACI	CCGC	9 cut(s)	575, 888, 1304, 2313, 2340, 2385, 2397, 2418, 2451
BspANI	GGCC	3 cut(s)	675, 1012, 1583
BspCNI	CTCAG	9 cut(s)	366, 636, 645, 1806, 1885, 1997, 2273, 2403, 2422
BspEI	TCCGGA	1 cut(s)	945
BspHI	TCATGA	1 cut(s)	1083
BspLI	GGNNCC	7 cut(s)	419, 696, 944, 1260, 1817, 2100, 2455
BspOI	GCTAGC	1 cut(s)	1980
BspPI	GGATC	6 cut(s)	73, 304, 698, 787, 937, 950
BspT104I	TTCGAA	1 cut(s)	1842
BspT107I	GGYRCC	3 cut(s)	694, 1258, 2453
BsrBI	CCGCTC	1 cut(s)	2387
BsrDI	GCAATG	4 cut(s)	1920, 2091, 2254, 2412
BsrFI	RCCGGY	4 cut(s)	456, 513, 675, 2165
BsrGI	TGTACA	1 cut(s)	2049
BsrI	ACTGG	3 cut(s)	676, 723, 1363
BssAI	RCCGGY	4 cut(s)	456, 513, 675, 2165
BssECI	CCNNGG	7 cut(s)	30, 54, 1007, 1600, 1768, 2058, 2486
BssMI	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
BssNI	GRCGYC	1 cut(s)	2454
BssSI	CACGAG	1 cut(s)	1062
BssT1I	CCWWGG	3 cut(s)	30, 1600, 2058
Bst2BI	CACGAG	1 cut(s)	1062
Bst2UI	CCWGG	8 cut(s)	380, 404, 699, 923, 1770, 1813, 1941, 2488
Bst4CI	ACNGT	8 cut(s)	953, 1008, 1171, 1508, 1647, 1738, 1835, 2278
Bst6I	CTCTTC	4 cut(s)	139, 624, 1221, 1962
BstACI	GRCGYC	1 cut(s)	2454
BstAUI	TGTACA	1 cut(s)	2049
BstBAI	YACGTR	1 cut(s)	2409
BstBI	TTCGAA	1 cut(s)	1842
BstC8I	GCNNGC	6 cut(s)	677, 885, 1535, 1539, 1978, 2299
BstDSI	CCRYGG	3 cut(s)	30, 1007, 2058
BstF5I	GGATG	9 cut(s)	595, 719, 907, 1002, 1137, 1319, 1518, 1936, 2073
BstH2I	RGCGCY	2 cut(s)	530, 2457
BstHHI	GCGC	4 cut(s)	529, 534, 1528, 2456
BstKTI	GATC	8 cut(s)	81, 256, 312, 706, 795, 945, 1042, 2206
BstMAI	GTCTC	2 cut(s)	873, 1580
BstMBI	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
BstMCI	CGRYCG	1 cut(s)	461
BstMWI	GCNNNNNNNGC	9 cut(s)	112, 291, 808, 1523, 1534, 1922, 2409, 2448, 2460
BstNI	CCWGG	8 cut(s)	380, 404, 699, 923, 1770, 1813, 1941, 2488
BstNSI	RCATGY	2 cut(s)	1420, 1457
BstPAI	GACNNNNGTC	1 cut(s)	1770
BstSCI	CCNGG	9 cut(s)	378, 402, 697, 921, 992, 1768, 1811, 1939, 2486
BstSFI	CTRYAG	2 cut(s)	518, 1504
BstV1I	GCAGC	9 cut(s)	153, 516, 1388, 2006, 2049, 2383, 2407, 2412, 2451
BstV2I	GAAGAC	2 cut(s)	1831, 2223
BstX2I	RGATCY	3 cut(s)	309, 703, 942
BstXI	CCANNNNNNTGG	1 cut(s)	2065
BstYI	RGATCY	3 cut(s)	309, 703, 942
BsuI	GTATCC	1 cut(s)	1421
BsuRI	GGCC	3 cut(s)	675, 1012, 1583
BtgI	CCRYGG	3 cut(s)	30, 1007, 2058
BtgZI	GCGATG	3 cut(s)	275, 1847, 2181
BtrI	CACGTC	1 cut(s)	2065
BtsCI	GGATG	9 cut(s)	595, 719, 907, 1002, 1137, 1319, 1518, 1936, 2073
BtsI	GCAGTG	5 cut(s)	297, 882, 1562, 2144, 2223
BtsIMutI	CAGTG	9 cut(s)	297, 882, 958, 1513, 1562, 1734, 1801, 2144, 2223
Cac8I	GCNNGC	6 cut(s)	677, 885, 1535, 1539, 1978, 2299
CaiI	CAGNNNCTG	2 cut(s)	385, 1769
CciI	TCATGA	1 cut(s)	1083
CfoI	GCGC	4 cut(s)	529, 534, 1528, 2456
Cfr10I	RCCGGY	4 cut(s)	456, 513, 675, 2165
Cfr13I	GGNCC	3 cut(s)	560, 2098, 2168
CseI	GACGC	1 cut(s)	2323
Csp6I	GTAC	1 cut(s)	2050
CspAI	ACCGGT	2 cut(s)	456, 2165
CspCI	CAANNNNNGTGG	2 cut(s)	823, 858
CviQI	GTAC	1 cut(s)	2050
DinI	GGCGCC	1 cut(s)	2455
DpnI	GATC	8 cut(s)	80, 255, 311, 705, 794, 944, 1041, 2205
DpnII	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
DraIII	CACNNNGTG	1 cut(s)	1912
DriI	GACNNNNNGTC	1 cut(s)	2288
EaeI	YGGCCR	2 cut(s)	673, 1581
Eam1104I	CTCTTC	4 cut(s)	139, 624, 1221, 1962
Eam1105I	GACNNNNNGTC	1 cut(s)	2288
EarI	CTCTTC	4 cut(s)	139, 624, 1221, 1962
Ecl136II	GAGCTC	1 cut(s)	1871
Eco130I	CCWWGG	3 cut(s)	30, 1600, 2058
Eco24I	GRGCYC	1 cut(s)	1873
Eco47I	GGWCC	3 cut(s)	560, 2098, 2168
Eco53kI	GAGCTC	1 cut(s)	1871
Eco57I	CTGAAG	3 cut(s)	413, 518, 1202
Eco72I	CACGTG	1 cut(s)	2409
EcoICRI	GAGCTC	1 cut(s)	1871
EcoO109I	RGGNCCY	1 cut(s)	2098
EcoRI	GAATTC	1 cut(s)	1897
EcoRII	CCWGG	8 cut(s)	378, 402, 697, 921, 1768, 1811, 1939, 2486
EcoT14I	CCWWGG	3 cut(s)	30, 1600, 2058
EcoT38I	GRGCYC	1 cut(s)	1873
EgeI	GGCGCC	1 cut(s)	2455
EheI	GGCGCC	1 cut(s)	2455
ErhI	CCWWGG	3 cut(s)	30, 1600, 2058
FaqI	GGGAC	5 cut(s)	402, 800, 1868, 2126, 2295
FbaI	TGATCA	2 cut(s)	253, 1039
FokI	GGATG	9 cut(s)	602, 706, 914, 1009, 1144, 1326, 1525, 1923, 2060
FriOI	GRGCYC	1 cut(s)	1873
FspBI	CTAG	3 cut(s)	1158, 1266, 1977
FspI	TGCGCA	1 cut(s)	533
GlaI	GCGC	4 cut(s)	528, 533, 1527, 2455
GsaI	CCCAGC	2 cut(s)	115, 389
GsuI	CTGGAG	3 cut(s)	720, 1346, 2314
HaeII	RGCGCY	2 cut(s)	530, 2457
HaeIII	GGCC	3 cut(s)	675, 1012, 1583
HapII	CCGG	7 cut(s)	457, 514, 676, 946, 994, 1398, 2166
HgaI	GACGC	1 cut(s)	2323
HhaI	GCGC	4 cut(s)	529, 534, 1528, 2456
Hin1I	GRCGYC	1 cut(s)	2454
Hin6I	GCGC	4 cut(s)	527, 532, 1526, 2454
HinP1I	GCGC	4 cut(s)	527, 532, 1526, 2454
HincII	GTYRAC	3 cut(s)	27, 1295, 1775
HindII	GTYRAC	3 cut(s)	27, 1295, 1775
HinfI	GANTC	5 cut(s)	621, 1721, 2030, 2159, 2283
HpaII	CCGG	7 cut(s)	457, 514, 676, 946, 994, 1398, 2166
HphI	GGTGA	6 cut(s)	43, 338, 941, 2174, 2179, 2329
Hpy188I	TCNGA	9 cut(s)	58, 78, 309, 463, 626, 654, 1597, 1720, 2467
Hpy188III	TCNNGA	8 cut(s)	207, 234, 660, 946, 1064, 1084, 1158, 2213
Hpy99I	CGWCG	3 cut(s)	432, 1372, 2030
HpyCH4III	ACNGT	8 cut(s)	953, 1008, 1171, 1508, 1647, 1738, 1835, 2278
HpyCH4IV	ACGT	6 cut(s)	45, 1285, 1971, 1995, 2064, 2408
HpyF10VI	GCNNNNNNNGC	9 cut(s)	112, 291, 808, 1523, 1534, 1922, 2409, 2448, 2460
HpySE526I	ACGT	6 cut(s)	45, 1285, 1971, 1995, 2064, 2408
Hsp92I	GRCGYC	1 cut(s)	2454
HspAI	GCGC	4 cut(s)	527, 532, 1526, 2454
KasI	GGCGCC	1 cut(s)	2453
Kpn2I	TCCGGA	1 cut(s)	945
KroI	GCCGGC	1 cut(s)	675
KroNI	GCCGGC	1 cut(s)	677
Ksp22I	TGATCA	2 cut(s)	253, 1039
Kzo9I	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
LmnI	GCTCC	6 cut(s)	120, 382, 880, 1135, 1821, 2468
Lsp1109I	GCAGC	9 cut(s)	153, 516, 1388, 2006, 2049, 2383, 2407, 2412, 2451
LweI	GCATC	5 cut(s)	462, 728, 1101, 1108, 2082
MaeI	CTAG	3 cut(s)	1158, 1266, 1977
MaeII	ACGT	6 cut(s)	45, 1285, 1971, 1995, 2064, 2408
MaeIII	GTNAC	4 cut(s)	49, 1647, 1759, 2335
MalI	GATC	8 cut(s)	80, 255, 311, 705, 794, 944, 1041, 2205
MbiI	CCGCTC	1 cut(s)	2387
MboI	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
MfeI	CAATTG	3 cut(s)	1323, 1945, 2078
MflI	RGATCY	3 cut(s)	309, 703, 942
MhlI	GDGCHC	2 cut(s)	1688, 1873
MlsI	TGGCCA	1 cut(s)	1583
MluNI	TGGCCA	1 cut(s)	1583
Mly113I	GGCGCC	1 cut(s)	2454
MlyI	GAGTC	3 cut(s)	615, 2039, 2277
MmeI	TCCRAC	5 cut(s)	148, 441, 615, 2195, 2490
Mox20I	TGGCCA	1 cut(s)	1583
MroI	TCCGGA	1 cut(s)	945
MroNI	GCCGGC	1 cut(s)	675
MscI	TGGCCA	1 cut(s)	1583
MseI	TTAA	5 cut(s)	333, 912, 975, 981, 2346
MslI	CAYNNNNRTG	5 cut(s)	834, 1035, 1833, 2057, 2063
Msp20I	TGGCCA	1 cut(s)	1583
MspA1I	CMGCKG	2 cut(s)	1222, 2420
MspI	CCGG	7 cut(s)	457, 514, 676, 946, 994, 1398, 2166
MspR9I	CCNGG	9 cut(s)	380, 404, 699, 923, 994, 1770, 1813, 1941, 2488
MteI	GCGCNGCGC	1 cut(s)	530
MunI	CAATTG	3 cut(s)	1323, 1945, 2078
Mva1269I	GAATGC	2 cut(s)	619, 2109
MvaI	CCWGG	8 cut(s)	380, 404, 699, 923, 1770, 1813, 1941, 2488
MwoI	GCNNNNNNNGC	9 cut(s)	112, 291, 808, 1523, 1534, 1922, 2409, 2448, 2460
NaeI	GCCGGC	1 cut(s)	677
NarI	GGCGCC	1 cut(s)	2454
NciI	CCSGG	1 cut(s)	994
NcoI	CCATGG	2 cut(s)	30, 2058
NdeII	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
NgoMIV	GCCGGC	1 cut(s)	675
NheI	GCTAGC	1 cut(s)	1976
NlaIV	GGNNCC	7 cut(s)	419, 696, 944, 1260, 1817, 2100, 2455
NmeAIII	GCCGAG	1 cut(s)	2106
NmuCI	GTSAC	4 cut(s)	49, 1647, 1759, 2335
NsbI	TGCGCA	1 cut(s)	533
NspI	RCATGY	2 cut(s)	1420, 1457
NspV	TTCGAA	1 cut(s)	1842
OliI	CACNNNNGTG	2 cut(s)	1035, 1833
PagI	TCATGA	1 cut(s)	1083
PctI	GAATGC	2 cut(s)	619, 2109
PdiI	GCCGGC	1 cut(s)	677
PfeI	GAWTC	2 cut(s)	1721, 2159
PflMI	CCANNNNNTGG	4 cut(s)	319, 385, 691, 1812
PinAI	ACCGGT	2 cut(s)	456, 2165
PleI	GAGTC	3 cut(s)	615, 2038, 2277
PluTI	GGCGCC	1 cut(s)	2457
PmaCI	CACGTG	1 cut(s)	2409
PmlI	CACGTG	1 cut(s)	2409
PpsI	GAGTC	3 cut(s)	615, 2038, 2277
Ppu21I	YACGTR	1 cut(s)	2409
PpuMI	RGGWCCY	1 cut(s)	2098
PshAI	GACNNNNGTC	1 cut(s)	1770
Psp124BI	GAGCTC	1 cut(s)	1873
Psp5II	RGGWCCY	1 cut(s)	2098
Psp6I	CCWGG	8 cut(s)	378, 402, 697, 921, 1768, 1811, 1939, 2486
PspCI	CACGTG	1 cut(s)	2409
PspFI	CCCAGC	2 cut(s)	111, 385
PspGI	CCWGG	8 cut(s)	378, 402, 697, 921, 1768, 1811, 1939, 2486
PspN4I	GGNNCC	7 cut(s)	419, 696, 944, 1260, 1817, 2100, 2455
PspPI	GGNCC	3 cut(s)	560, 2098, 2168
PspPPI	RGGWCCY	1 cut(s)	2098
PsrI	GAACNNNNNNTAC	2 cut(s)	494, 526
PstNI	CAGNNNCTG	2 cut(s)	385, 1769
PsuI	RGATCY	3 cut(s)	309, 703, 942
PvuII	CAGCTG	1 cut(s)	1222
RsaI	GTAC	1 cut(s)	2051
RsaNI	GTAC	1 cut(s)	2050
RseI	CAYNNNNRTG	5 cut(s)	834, 1035, 1833, 2057, 2063
SacI	GAGCTC	1 cut(s)	1873
SaqAI	TTAA	5 cut(s)	333, 912, 975, 981, 2346
Sau3AI	GATC	8 cut(s)	78, 253, 309, 703, 792, 942, 1039, 2203
Sau96I	GGNCC	3 cut(s)	560, 2098, 2168
SchI	GAGTC	3 cut(s)	615, 2039, 2277
ScrFI	CCNGG	9 cut(s)	380, 404, 699, 923, 994, 1770, 1813, 1941, 2488
SduI	GDGCHC	2 cut(s)	1688, 1873
SfaNI	GCATC	5 cut(s)	462, 728, 1101, 1108, 2082
SfcI	CTRYAG	2 cut(s)	518, 1504
SfoI	GGCGCC	1 cut(s)	2455
SfuI	TTCGAA	1 cut(s)	1842
SinI	GGWCC	3 cut(s)	560, 2098, 2168
SmiMI	CAYNNNNRTG	5 cut(s)	834, 1035, 1833, 2057, 2063
SmlI	CTYRAG	3 cut(s)	608, 1022, 1033
SmoI	CTYRAG	3 cut(s)	608, 1022, 1033
SsiI	CCGC	9 cut(s)	575, 888, 1304, 2313, 2340, 2385, 2397, 2418, 2451
SspDI	GGCGCC	1 cut(s)	2453
SspI	AATATT	2 cut(s)	538, 1488
SspMI	CTAG	3 cut(s)	1158, 1266, 1977
SstI	GAGCTC	1 cut(s)	1873
StyD4I	CCNGG	9 cut(s)	378, 402, 697, 921, 992, 1768, 1811, 1939, 2486
StyI	CCWWGG	3 cut(s)	30, 1600, 2058
TaaI	ACNGT	8 cut(s)	953, 1008, 1171, 1508, 1647, 1738, 1835, 2278
TaiI	ACGT	6 cut(s)	48, 1288, 1974, 1998, 2067, 2411
TaqI	TCGA	3 cut(s)	604, 619, 1842
TatI	WGTACW	1 cut(s)	2049
TauI	GCSGC	4 cut(s)	890, 2400, 2420, 2454
TfiI	GAWTC	2 cut(s)	1721, 2159
Tru1I	TTAA	5 cut(s)	333, 912, 975, 981, 2346
Tru9I	TTAA	5 cut(s)	333, 912, 975, 981, 2346
TscAI	CASTG	9 cut(s)	304, 882, 958, 1513, 1562, 1741, 1801, 2151, 2230
TseFI	GTSAC	4 cut(s)	49, 1647, 1759, 2335
TseI	GCWGC	9 cut(s)	166, 529, 1401, 2019, 2037, 2371, 2400, 2420, 2439
Tsp45I	GTSAC	4 cut(s)	49, 1647, 1759, 2335
TspDTI	ATGAA	9 cut(s)	60, 91, 455, 606, 755, 882, 918, 1100, 1655
TspRI	CASTG	9 cut(s)	304, 882, 958, 1513, 1562, 1741, 1801, 2151, 2230
Van91I	CCANNNNNTGG	4 cut(s)	319, 385, 691, 1812
VpaK11BI	GGWCC	3 cut(s)	560, 2098, 2168
XapI	RAATTY	4 cut(s)	325, 1242, 1633, 1897
XbaI	TCTAGA	1 cut(s)	1157
XceI	RCATGY	2 cut(s)	1420, 1457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	730
XspI	CTAG	3 cut(s)	1158, 1266, 1977

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.