Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

23020767 .. 23026819

Gene Structure 6053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG253600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2415 bp

ATGTATGGGGATTGCCAAGTAATGACAACCATGGGAGGCGGGAACGTAGTCAACTCTGAAACCCTCTTTTCCTCGCCGATCCAAAACCCTAACTTCAACTTCATGCCTTTCCAGCCTTTCTCTTCCATCCTTCCGAAGGAAGAAACTGGGCTTATGACTAGAGGAAAGGAAGAGATGATGGAGAGTGGGTCTGGGAGTGAACATGCTGAAGAAAAGTACTCCGGCAACGAACAAGAGACCGAAGAACAACTGCAACAACAGCCTCCCAAAAAGAAACGCTACCATCGCCATACCGCTCACCAGATCCAGGAAATGGAAAATTTATTTAAGGAGTGTCCACACCCAGATGACAAGCAGAGGCAAAAGCTGAGCCTAGATCTGGGGCTGAAACCACGCCAGGTCAAGTTTTGGTTTCAAAATCGCCGAACCCAAATGAAGGCACAACAAGACCGGGCTGATAATGCCATGCTTAGAGCTGAAAATGATACCCTAAAAAATGAGAATTACAGGCTTCAAGCTGCACTGCGCAACATTATATGCCCTAACTGTGGAGGCGCGGCATTGATTGGGGACATTGCCTTGGATGAACACCAACTTCGTCTCGAAAATGCTAGACTCCGAGAAGAGTTGGAACGAGTTTGTTGCCTCTCCGGGTACCCTGGGGGCCGGCAAATTCAAACCATGGGACCAGCAGCCCCTCTAATGGCGGCATCTTTGGACTTGGACATGAATATCTATTCAAGGCATTTACCAGACCCAATGATGAGTTCTTGTACTGATCATCATATGATTCCCATGAGTATTTTGCCACCAGAGCCTTCTCACTTCCCTGAGGGAGGTCTGTTGTTAGATGATGAGAAGACGCTTGCAATGAAGCTCGCTGCTTCATCCCTCGAAGAACTTGTTAAGATGTGCACTGCTAGTGAGCCTCTTTGGATGAAAAACAGTGACAATGGAATGGAAATGCTTAATGCTGAAGAACGAGCTCGTATGTTCCCATGGCCTTTGAACTTCAAGCAGAACTCAAGTGATTTAAGAACTGAAGCTACTCGTGATACTGCTGTGGTCATAATGAATAGCATTAATCTTGTGGATGCCTTCCTTGATGCTAATAAGTGGATGGAATTGTTTCCTTCTATTGTTTCCAAAGCAAAAACAGTTCAAGTTATCTCAGCAGATCCTTCTGGTCAAGCAAATGGTTCACTTCAGCTGATGTATGCGGAATTGCAAGTTGTATCTCCTCTGGTGCCAACTAGAGAAACTCATTTTCTGCGCTATTGTCAACAAAATGAAGAGGAGGGAAGTTGGGCAATTGTCGATTTCCCAATTGATAGTTTCCATGGTAGCTTCCAACCTTCCTTTCCCAGGTACAAGAGATGGCCTTCCGGCTGTCTCATCCAAGATATGCCCAATGGATACTCAAGGGTTACCTGGGTAGAACATGCAGAGGTAGAAGAGAAGCCTGTCCATCAAATATTCAGTCACTATGTTTACAGTGGGATGGCTTTTGGGGCGCATAGATGGTTAGCTGTTTTACAGAGGCAATGTGAAAGGGTTGCAAGTCTCATGGCCAGAAATATATCAGACCTCGGAGTGATACCTTCTCCTGAGGCAAGAAGGAATTTGATGAGACTAGCCCAGAGAATGATAAGAACATTCAGTGTGAACATGAGCACATCCGGTGGGCAGGCATGGACCGCTCTATCGGATTCCCCAGATGACACTATTCGAATAACCACAAGGAAAGTCTCAGAGGCTGGCCAACCCAATGGAGTCATTCTCAGTGCAGTTTCCACCACCTGGCTTCCTTATTCTCACTACCGTGTCTTTGAGCTCTTAAGGGACGAACGTCGCAGAGCTCAGCTTGATGTTCTTTCCAATGGAACTTCCTTGCAAGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAATTGCATTTCTGTTCTTCGCGTTAATGTAGCTAGCAACTCAACGCAGAACATAGAGCTGATGCTACAAGAGAGTTGCACCGATCCGTCAGGAAGCCTAGTTGTGTACGCAACCATGGACGTGAACGACATCCAATTGGCAATGAGCGGAGAGGATCCATCCTGCATTCCCATCCTTCCTCTAGGGTTTGCCATTGTCCCAGTTGAGTCCACTACCGAGAGTACTACTACAACATCCCCGTCAGCCCAAGACAGCCGCAACTCGGGTTGCCTTATGACGGTGGGACTCCAAGTTGTTGCCAGCCCAAACCCTTCTGCAAAGCTCAACCTCTCCACCGTCACTGCCATTAACAACCACCTGTGCAACTCGGTCCAGCAGATCATCTCAGCTCTCGGCAACACCACCACAACAACTACTGATAATGGCAACACTGTTGGTGGTGGTGGCTCTTGCTCCGAGCTAACTGCTGCGAGCTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

804

Amino Acids

89.16

Weight (kDa)

5.49

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 146	3.5e-19	Homeodomain
START	PF01852	294 - 518	9.1e-42	START domain
PDF2_C	PF25797	535 - 775	9.6e-81	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
Acc65I	GGTACC	1 cut(s)	654
AccB1I	GGYRCC	2 cut(s)	654, 1246
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1800
AccBSI	CCGCTC	3 cut(s)	296, 1700, 2079
AccII	CGCG	2 cut(s)	557, 1953
AciI	CCGC	8 cut(s)	39, 294, 557, 707, 1220, 1698, 2079, 2188
AclWI	GGATC	6 cut(s)	73, 298, 1172, 2009, 2081, 2094
AcoI	YGGCCR	2 cut(s)	1569, 1759
AcsI	RAATTY	3 cut(s)	319, 672, 1621
AcuI	CTGAAG	4 cut(s)	228, 996, 1062, 1190
AfaI	GTAC	6 cut(s)	218, 656, 775, 1370, 2039, 2155
AflII	CTTAAG	1 cut(s)	1837
AgsI	TTSAA	8 cut(s)	97, 416, 515, 677, 741, 1009, 1015, 1163
AjiI	CACGTC	1 cut(s)	2053
AjnI	CCWGG	7 cut(s)	306, 396, 658, 1364, 1430, 1799, 1927
AjuI	GAANNNNNNNTTGG	4 cut(s)	751, 783, 1344, 1376
AleI	CACNNNNGTG	1 cut(s)	1821
Alw21I	GWGCWC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
Alw26I	GTCTC	6 cut(s)	230, 605, 1397, 1568, 1624, 1753
Alw44I	GTGCAC	1 cut(s)	913
AlwI	GGATC	6 cut(s)	73, 298, 1172, 2009, 2081, 2094
AlwNI	CAGNNNCTG	1 cut(s)	1757
Ama87I	CYCGRG	1 cut(s)	2194
AoxI	GGCC	5 cut(s)	664, 1001, 1379, 1569, 1759
ApaLI	GTGCAC	1 cut(s)	913
ApeKI	GCWGC	4 cut(s)	518, 692, 881, 2399
ApoI	RAATTY	3 cut(s)	319, 672, 1621
ArsI	GACNNNNNNTTYG	2 cut(s)	1465, 1497
AseI	ATTAAT	1 cut(s)	1083
Asp700I	GAANNNNTTC	1 cut(s)	1128
Asp718I	GGTACC	1 cut(s)	654
AspLEI	GCGC	4 cut(s)	528, 557, 1275, 1516
AspS9I	GGNCC	4 cut(s)	664, 686, 1695, 2302
AsuC2I	CCSGG	2 cut(s)	452, 652
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	1729
AsuNHI	GCTAGC	1 cut(s)	1964
AvaI	CYCGRG	1 cut(s)	2194
AvaII	GGWCC	3 cut(s)	686, 1695, 2302
AxyI	CCTNAGG	2 cut(s)	831, 1608
BaeGI	GKGCMC	1 cut(s)	917
BaeI	ACNNNNGTAYC	2 cut(s)	1047, 1080
BalI	TGGCCA	2 cut(s)	1571, 1761
BamHI	GGATCC	1 cut(s)	2086
BanI	GGYRCC	2 cut(s)	654, 1246
BanII	GRGCYC	4 cut(s)	988, 1836, 1861, 2408
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	866
Bbv12I	GWGCWC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
BbvI	GCAGC	4 cut(s)	505, 704, 868, 2386
BcgI	CGANNNNNNTGC	4 cut(s)	624, 658, 2378, 2412
BciT130I	CCWGG	7 cut(s)	308, 398, 660, 1366, 1432, 1801, 1929
BciVI	GTATCC	1 cut(s)	1409
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	2 cut(s)	452, 652
BcoDI	GTCTC	6 cut(s)	230, 605, 1397, 1568, 1624, 1753
BfaI	CTAG	9 cut(s)	159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114
BfrI	CTTAAG	1 cut(s)	1837
BfuI	GTATCC	1 cut(s)	1409
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	7 cut(s)	519, 558, 693, 708, 882, 2188, 2400
BlpI	GCTNAGC	2 cut(s)	368, 1860
BlsI	GCNGC	7 cut(s)	520, 559, 694, 709, 883, 2189, 2401
BmcAI	AGTACT	2 cut(s)	218, 2155
Bme1390I	CCNGG	9 cut(s)	308, 398, 452, 652, 660, 1366, 1432, 1801, 1929
Bme18I	GGWCC	3 cut(s)	686, 1695, 2302
BmeT110I	CYCGRG	1 cut(s)	2194
BmgBI	CACGTC	1 cut(s)	2053
BmgT120I	GGNCC	4 cut(s)	664, 686, 1695, 2302
BmiI	GGNNCC	5 cut(s)	656, 665, 687, 1248, 2088
BmrFI	CCNGG	9 cut(s)	308, 398, 452, 652, 660, 1366, 1432, 1801, 1929
BmrI	ACTGGG	2 cut(s)	156, 2126
BmsI	GCATC	4 cut(s)	719, 1084, 1096, 1983
BmtI	GCTAGC	1 cut(s)	1968
BmuI	ACTGGG	2 cut(s)	156, 2126
BoxI	GACNNNNGTC	1 cut(s)	1848
BpiI	GAAGAC	1 cut(s)	866
BplI	GAGNNNNNCTC	2 cut(s)	1764, 1796
Bpu1102I	GCTNAGC	2 cut(s)	368, 1860
Bpu14I	TTCGAA	1 cut(s)	1729
BpuEI	CTTGAG	2 cut(s)	1009, 1405
BpuMI	CCSGG	2 cut(s)	452, 652
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	1679
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	2 cut(s)	151, 2132
Bse21I	CCTNAGG	2 cut(s)	831, 1608
Bse3DI	GCAATG	5 cut(s)	573, 876, 1550, 1908, 2079
BseBI	CCWGG	7 cut(s)	308, 398, 660, 1366, 1432, 1801, 1929
BseMI	GCAATG	5 cut(s)	573, 876, 1550, 1908, 2079
BseMII	CTCAG	8 cut(s)	359, 822, 1185, 1599, 1764, 1795, 1874, 2331
BseNI	ACTGG	2 cut(s)	151, 2132
BseRI	GAGGAG	2 cut(s)	1230, 1310
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	4 cut(s)	505, 704, 868, 2386
BsgI	GTGCAG	2 cut(s)	504, 1806
Bsh1236I	CGCG	2 cut(s)	557, 1953
BshFI	GGCC	5 cut(s)	666, 1003, 1381, 1571, 1761
BshNI	GGYRCC	2 cut(s)	654, 1246
BsiHKAI	GWGCWC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
BsiHKCI	CYCGRG	1 cut(s)	2194
BsiSI	CCGG	6 cut(s)	222, 451, 651, 667, 1386, 1680
BslFI	GGGAC	5 cut(s)	584, 699, 1856, 2114, 2229
BsmAI	GTCTC	6 cut(s)	230, 605, 1397, 1568, 1624, 1753
BsmBI	CGTCTC	1 cut(s)	605
BsmFI	GGGAC	5 cut(s)	584, 699, 1856, 2114, 2229
BsmI	GAATGC	1 cut(s)	2097
BsnI	GGCC	5 cut(s)	666, 1003, 1381, 1571, 1761
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	2194
Bsp119I	TTCGAA	1 cut(s)	1729
Bsp1286I	GDGCHC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
Bsp143I	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
Bsp1720I	GCTNAGC	2 cut(s)	368, 1860
Bsp19I	CCATGG	5 cut(s)	30, 681, 998, 1339, 2046
BspACI	CCGC	8 cut(s)	39, 294, 557, 707, 1220, 1698, 2079, 2188
BspANI	GGCC	5 cut(s)	666, 1003, 1381, 1571, 1761
BspCNI	CTCAG	8 cut(s)	360, 823, 1184, 1600, 1763, 1794, 1873, 2330
BspFNI	CGCG	2 cut(s)	557, 1953
BspLI	GGNNCC	5 cut(s)	656, 665, 687, 1248, 2088
BspOI	GCTAGC	1 cut(s)	1968
BspPI	GGATC	6 cut(s)	73, 298, 1172, 2009, 2081, 2094
BspT104I	TTCGAA	1 cut(s)	1729
BspT107I	GGYRCC	2 cut(s)	654, 1246
BspTI	CTTAAG	1 cut(s)	1837
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	3 cut(s)	296, 1700, 2079
BsrDI	GCAATG	5 cut(s)	573, 876, 1550, 1908, 2079
BsrFI	RCCGGY	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	151, 2132
BssAI	RCCGGY	1 cut(s)	666
BssMI	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	6 cut(s)	30, 579, 681, 998, 1339, 2046
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	7 cut(s)	308, 398, 660, 1366, 1432, 1801, 1929
Bst4CI	ACNGT	8 cut(s)	548, 947, 1159, 1496, 1823, 2212, 2269, 2365
Bst6I	CTCTTC	5 cut(s)	127, 165, 618, 1287, 1449
BstAFI	CTTAAG	1 cut(s)	1837
BstBI	TTCGAA	1 cut(s)	1729
BstC8I	GCNNGC	8 cut(s)	668, 867, 879, 1689, 1759, 1966, 2233, 2404
BstDEI	CTNAG	9 cut(s)	368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317
BstDSI	CCRYGG	5 cut(s)	30, 681, 998, 1339, 2046
BstEII	GGTNACC	1 cut(s)	1426
BstENI	CCTNNNNNAGG	3 cut(s)	134, 834, 1363
BstFNI	CGCG	2 cut(s)	557, 1953
BstHHI	GCGC	4 cut(s)	528, 557, 1275, 1516
BstKTI	GATC	8 cut(s)	81, 306, 379, 781, 1180, 2017, 2089, 2313
BstMAI	GTCTC	6 cut(s)	230, 605, 1397, 1568, 1624, 1753
BstMBI	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
BstMWI	GCNNNNNNNGC	8 cut(s)	112, 259, 285, 461, 814, 1511, 1697, 1910
BstNI	CCWGG	7 cut(s)	308, 398, 660, 1366, 1432, 1801, 1929
BstNSI	RCATGY	2 cut(s)	206, 1445
BstPAI	GACNNNNGTC	1 cut(s)	1848
BstPI	GGTNACC	1 cut(s)	1426
BstSCI	CCNGG	9 cut(s)	306, 396, 450, 650, 658, 1364, 1430, 1799, 1927
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	2 cut(s)	557, 1953
BstV1I	GCAGC	4 cut(s)	505, 704, 868, 2386
BstV2I	GAAGAC	1 cut(s)	866
BstX2I	RGATCY	4 cut(s)	303, 376, 1177, 2086
BstXI	CCANNNNNNTGG	1 cut(s)	1769
BstYI	RGATCY	4 cut(s)	303, 376, 1177, 2086
Bsu36I	CCTNAGG	2 cut(s)	831, 1608
BsuI	GTATCC	1 cut(s)	1409
BsuRI	GGCC	5 cut(s)	666, 1003, 1381, 1571, 1761
BtgI	CCRYGG	5 cut(s)	30, 681, 998, 1339, 2046
BtgZI	GCGATG	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	2053
BtsI	GCAGTG	3 cut(s)	521, 915, 2271
BtsIMutI	CAGTG	8 cut(s)	521, 915, 952, 1501, 1666, 1789, 2271, 2361
Cac8I	GCNNGC	8 cut(s)	668, 867, 879, 1689, 1759, 1966, 2233, 2404
CaiI	CAGNNNCTG	1 cut(s)	1757
CfoI	GCGC	4 cut(s)	528, 557, 1275, 1516
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	4 cut(s)	664, 686, 1695, 2302
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	6 cut(s)	217, 655, 774, 1369, 2038, 2154
CviQI	GTAC	6 cut(s)	217, 655, 774, 1369, 2038, 2154
DdeI	CTNAG	9 cut(s)	368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317
DpnI	GATC	8 cut(s)	80, 305, 378, 780, 1179, 2016, 2088, 2312
DpnII	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
EaeI	YGGCCR	2 cut(s)	1569, 1759
Eam1104I	CTCTTC	5 cut(s)	127, 165, 618, 1287, 1449
EarI	CTCTTC	5 cut(s)	127, 165, 618, 1287, 1449
Ecl136II	GAGCTC	4 cut(s)	986, 1834, 1859, 2406
Eco130I	CCWWGG	6 cut(s)	30, 579, 681, 998, 1339, 2046
Eco24I	GRGCYC	4 cut(s)	988, 1836, 1861, 2408
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	686, 1695, 2302
Eco53kI	GAGCTC	4 cut(s)	986, 1834, 1859, 2406
Eco57I	CTGAAG	4 cut(s)	228, 996, 1062, 1190
Eco81I	CCTNAGG	2 cut(s)	831, 1608
Eco88I	CYCGRG	1 cut(s)	2194
Eco91I	GGTNACC	1 cut(s)	1426
EcoICRI	GAGCTC	4 cut(s)	986, 1834, 1859, 2406
EcoNI	CCTNNNNNAGG	3 cut(s)	134, 834, 1363
EcoO65I	GGTNACC	1 cut(s)	1426
EcoRII	CCWGG	7 cut(s)	306, 396, 658, 1364, 1430, 1799, 1927
EcoT14I	CCWWGG	6 cut(s)	30, 579, 681, 998, 1339, 2046
EcoT38I	GRGCYC	4 cut(s)	988, 1836, 1861, 2408
ErhI	CCWWGG	6 cut(s)	30, 579, 681, 998, 1339, 2046
Esp3I	CGTCTC	1 cut(s)	605
FaqI	GGGAC	5 cut(s)	584, 699, 1856, 2114, 2229
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	7 cut(s)	519, 558, 693, 708, 882, 2188, 2400
FriOI	GRGCYC	4 cut(s)	988, 1836, 1861, 2408
Fsp4HI	GCNGC	7 cut(s)	519, 558, 693, 708, 882, 2188, 2400
FspBI	CTAG	9 cut(s)	159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	4 cut(s)	527, 556, 1274, 1515
GluI	GCNGC	7 cut(s)	519, 558, 693, 708, 882, 2188, 2400
HaeIII	GGCC	5 cut(s)	666, 1003, 1381, 1571, 1761
HapII	CCGG	6 cut(s)	222, 451, 651, 667, 1386, 1680
HgaI	GACGC	1 cut(s)	871
HhaI	GCGC	4 cut(s)	528, 557, 1275, 1516
Hin6I	GCGC	4 cut(s)	526, 555, 1273, 1514
HinP1I	GCGC	4 cut(s)	526, 555, 1273, 1514
HincII	GTYRAC	2 cut(s)	52, 1283
HindII	GTYRAC	2 cut(s)	52, 1283
HinfI	GANTC	6 cut(s)	615, 790, 1709, 1773, 2138, 2217
HpaII	CCGG	6 cut(s)	222, 451, 651, 667, 1386, 1680
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	8 cut(s)	58, 135, 620, 1585, 1592, 1708, 1753, 2389
Hpy188III	TCNNGA	4 cut(s)	602, 1052, 1607, 2022
Hpy99I	CGWCG	1 cut(s)	1854
HpyCH4III	ACNGT	8 cut(s)	548, 947, 1159, 1496, 1823, 2212, 2269, 2365
HpyCH4IV	ACGT	3 cut(s)	45, 1849, 2052
HpyF10VI	GCNNNNNNNGC	8 cut(s)	112, 259, 285, 461, 814, 1511, 1697, 1910
HpyF3I	CTNAG	9 cut(s)	368, 470, 831, 1171, 1608, 1750, 1781, 1860, 2317
HpySE526I	ACGT	3 cut(s)	45, 1849, 2052
HspAI	GCGC	4 cut(s)	526, 555, 1273, 1514
KpnI	GGTACC	1 cut(s)	658
KroI	GCCGGC	1 cut(s)	666
KroNI	GCCGGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
LmnI	GCTCC	2 cut(s)	2390, 2411
Lsp1109I	GCAGC	4 cut(s)	505, 704, 868, 2386
LweI	GCATC	4 cut(s)	719, 1084, 1096, 1983
MaeI	CTAG	9 cut(s)	159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114
MaeII	ACGT	3 cut(s)	45, 1849, 2052
MaeIII	GTNAC	4 cut(s)	947, 1426, 1481, 2269
MalI	GATC	8 cut(s)	80, 305, 378, 780, 1179, 2016, 2088, 2312
MbiI	CCGCTC	3 cut(s)	296, 1700, 2079
MboI	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
MfeI	CAATTG	3 cut(s)	1311, 1326, 2066
MflI	RGATCY	4 cut(s)	303, 376, 1177, 2086
MhlI	GDGCHC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
MlsI	TGGCCA	2 cut(s)	1571, 1761
MluNI	TGGCCA	2 cut(s)	1571, 1761
MlyI	GAGTC	4 cut(s)	609, 1782, 2147, 2211
MmeI	TCCRAC	2 cut(s)	609, 1375
Mox20I	TGGCCA	2 cut(s)	1571, 1761
MroNI	GCCGGC	1 cut(s)	666
MroXI	GAANNNNTTC	1 cut(s)	1128
MscI	TGGCCA	2 cut(s)	1571, 1761
MseI	TTAA	8 cut(s)	327, 906, 969, 1034, 1083, 1838, 1956, 2280
MslI	CAYNNNNRTG	3 cut(s)	345, 1821, 2051
Msp20I	TGGCCA	2 cut(s)	1571, 1761
MspA1I	CMGCKG	1 cut(s)	1210
MspCI	CTTAAG	1 cut(s)	1837
MspI	CCGG	6 cut(s)	222, 451, 651, 667, 1386, 1680
MspR9I	CCNGG	9 cut(s)	308, 398, 452, 652, 660, 1366, 1432, 1801, 1929
MunI	CAATTG	3 cut(s)	1311, 1326, 2066
Mva1269I	GAATGC	1 cut(s)	2097
MvaI	CCWGG	7 cut(s)	308, 398, 660, 1366, 1432, 1801, 1929
MvnI	CGCG	2 cut(s)	557, 1953
MwoI	GCNNNNNNNGC	8 cut(s)	112, 259, 285, 461, 814, 1511, 1697, 1910
NaeI	GCCGGC	1 cut(s)	668
NciI	CCSGG	2 cut(s)	452, 652
NcoI	CCATGG	5 cut(s)	30, 681, 998, 1339, 2046
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
NgoMIV	GCCGGC	1 cut(s)	666
NheI	GCTAGC	1 cut(s)	1964
NlaIV	GGNNCC	5 cut(s)	656, 665, 687, 1248, 2088
NmeAIII	GCCGAG	1 cut(s)	2304
NmuCI	GTSAC	3 cut(s)	947, 1481, 2269
NsbI	TGCGCA	1 cut(s)	527
NspI	RCATGY	2 cut(s)	206, 1445
NspV	TTCGAA	1 cut(s)	1729
OliI	CACNNNNGTG	1 cut(s)	1821
PasI	CCCWGGG	1 cut(s)	659
PctI	GAATGC	1 cut(s)	2097
PdiI	GCCGGC	1 cut(s)	668
PdmI	GAANNNNTTC	1 cut(s)	1128
PfeI	GAWTC	2 cut(s)	790, 1709
PflMI	CCANNNNNTGG	2 cut(s)	313, 1800
PfoI	TCCNGGA	2 cut(s)	306, 1927
PkrI	GCNGC	7 cut(s)	520, 559, 694, 709, 883, 2189, 2401
PleI	GAGTC	4 cut(s)	609, 1781, 2146, 2211
PpsI	GAGTC	4 cut(s)	609, 1781, 2146, 2211
PshAI	GACNNNNGTC	1 cut(s)	1848
PshBI	ATTAAT	1 cut(s)	1083
Psp124BI	GAGCTC	4 cut(s)	988, 1836, 1861, 2408
Psp6I	CCWGG	7 cut(s)	306, 396, 658, 1364, 1430, 1799, 1927
PspEI	GGTNACC	1 cut(s)	1426
PspGI	CCWGG	7 cut(s)	306, 396, 658, 1364, 1430, 1799, 1927
PspN4I	GGNNCC	5 cut(s)	656, 665, 687, 1248, 2088
PspPI	GGNCC	4 cut(s)	664, 686, 1695, 2302
PsrI	GAACNNNNNNTAC	2 cut(s)	1030, 1062
PstNI	CAGNNNCTG	1 cut(s)	1757
PsuI	RGATCY	4 cut(s)	303, 376, 1177, 2086
PvuII	CAGCTG	1 cut(s)	1210
RsaI	GTAC	6 cut(s)	218, 656, 775, 1370, 2039, 2155
RsaNI	GTAC	6 cut(s)	217, 655, 774, 1369, 2038, 2154
RseI	CAYNNNNRTG	3 cut(s)	345, 1821, 2051
SacI	GAGCTC	4 cut(s)	988, 1836, 1861, 2408
SaqAI	TTAA	8 cut(s)	327, 906, 969, 1034, 1083, 1838, 1956, 2280
SatI	GCNGC	7 cut(s)	519, 558, 693, 708, 882, 2188, 2400
Sau3AI	GATC	8 cut(s)	78, 303, 376, 778, 1177, 2014, 2086, 2310
Sau96I	GGNCC	4 cut(s)	664, 686, 1695, 2302
ScaI	AGTACT	2 cut(s)	218, 2155
SchI	GAGTC	4 cut(s)	609, 1782, 2147, 2211
ScrFI	CCNGG	9 cut(s)	308, 398, 452, 652, 660, 1366, 1432, 1801, 1929
SduI	GDGCHC	6 cut(s)	917, 988, 1676, 1836, 1861, 2408
SfaNI	GCATC	4 cut(s)	719, 1084, 1096, 1983
SfuI	TTCGAA	1 cut(s)	1729
SinI	GGWCC	3 cut(s)	686, 1695, 2302
SmiMI	CAYNNNNRTG	3 cut(s)	345, 1821, 2051
SmlI	CTYRAG	3 cut(s)	1024, 1420, 1837
SmoI	CTYRAG	3 cut(s)	1024, 1420, 1837
SsiI	CCGC	8 cut(s)	39, 294, 557, 707, 1220, 1698, 2079, 2188
SspI	AATATT	1 cut(s)	1476
SspMI	CTAG	9 cut(s)	159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114
SstI	GAGCTC	4 cut(s)	988, 1836, 1861, 2408
StyD4I	CCNGG	9 cut(s)	306, 396, 450, 650, 658, 1364, 1430, 1799, 1927
StyI	CCWWGG	6 cut(s)	30, 579, 681, 998, 1339, 2046
TaaI	ACNGT	8 cut(s)	548, 947, 1159, 1496, 1823, 2212, 2269, 2365
TaiI	ACGT	3 cut(s)	48, 1852, 2055
TaqI	TCGA	4 cut(s)	603, 894, 1317, 1729
TaqII	GACCGA	2 cut(s)	254, 2290
TatI	WGTACW	3 cut(s)	216, 773, 2153
TauI	GCSGC	3 cut(s)	560, 710, 2190
TfiI	GAWTC	2 cut(s)	790, 1709
Tru1I	TTAA	8 cut(s)	327, 906, 969, 1034, 1083, 1838, 1956, 2280
Tru9I	TTAA	8 cut(s)	327, 906, 969, 1034, 1083, 1838, 1956, 2280
TscAI	CASTG	8 cut(s)	528, 922, 952, 1501, 1666, 1789, 2278, 2368
TseFI	GTSAC	3 cut(s)	947, 1481, 2269
TseI	GCWGC	4 cut(s)	518, 692, 881, 2399
Tsp45I	GTSAC	3 cut(s)	947, 1481, 2269
TspDTI	ATGAA	9 cut(s)	91, 449, 600, 743, 876, 887, 953, 1088, 1305
TspGWI	ACGGA	1 cut(s)	2007
TspRI	CASTG	8 cut(s)	528, 922, 952, 1501, 1666, 1789, 2278, 2368
Van91I	CCANNNNNTGG	2 cut(s)	313, 1800
Vha464I	CTTAAG	1 cut(s)	1837
VneI	GTGCAC	1 cut(s)	913
VpaK11BI	GGWCC	3 cut(s)	686, 1695, 2302
VspI	ATTAAT	1 cut(s)	1083
XagI	CCTNNNNNAGG	3 cut(s)	134, 834, 1363
XapI	RAATTY	3 cut(s)	319, 672, 1621
XceI	RCATGY	2 cut(s)	206, 1445
XmnI	GAANNNNTTC	1 cut(s)	1128
XspI	CTAG	9 cut(s)	159, 374, 612, 921, 1254, 1634, 1965, 2030, 2114
ZrmI	AGTACT	2 cut(s)	218, 2155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.