Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009130.1

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2222 .. 3442

Gene Structure 1221 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atgtcaaccatgggaggtgggaacgtagtcaactctgaaaccctcttttcctcgccgatgcaaaaccctaacttcaacttcatgcccttccagcctttctcttccatccttccgaaggaagaaactgggcttatgactagaggaaaggaggagatgatggagagtgggtctgggagtgaacatgctgaagaaaagtactctggcaacgaacaagagaccgaagaacaactgcagcaacagcctcccaagaagaaacgctaccatcgccataccgctcaccagatccaggaaatggaaaatttatttaaggagtgtccacacccagatgacaagcagaggcaaaagctgagcctagatctgggactgaaaccacgccaggtcaagttttggtttcaaaatcgccgaacccaaatgaaggcacaacaagaccgggctgataatgtcatgcttagagctgaaaatgatacccttaaaaatgagaattacaggcttcaagctgcactgcgcaatattatatgccctaactgtggaggtgcggctatgattggggacattgccttggatgaacaccaacttcatctcgaaaatgctagactccgagaagaggtatgcaactccattgtagctatggcaggaaattgtatttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

216

Amino Acids

24.82

Weight (kDa)

6.0

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	292
AccBSI	CCGCTC	1 cut(s)	275
AciI	CCGC	2 cut(s)	273, 536
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	207
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	7 cut(s)	115, 286, 292, 358, 415, 527, 604
AgsI	TTSAA	3 cut(s)	76, 395, 494
AjnI	CCWGG	2 cut(s)	285, 375
AjuI	GAANNNNNNNTTGG	1 cut(s)	628
AluBI	AGCT	4 cut(s)	346, 455, 497, 626
AluI	AGCT	4 cut(s)	346, 455, 497, 626
Alw26I	GTCTC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	232, 497
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	269
BarI	GAAGNNNNNNTAC	2 cut(s)	242, 274
BbvI	GCAGC	2 cut(s)	244, 484
BccI	CCATC	3 cut(s)	113, 151, 270
BciT130I	CCWGG	2 cut(s)	287, 377
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	3 cut(s)	138, 353, 591
BfmI	CTRYAG	1 cut(s)	230
BglII	AGATCT	1 cut(s)	355
BisI	GCNGC	3 cut(s)	233, 498, 537
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	3 cut(s)	234, 499, 538
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	3 cut(s)	287, 377, 431
BmrFI	CCNGG	3 cut(s)	287, 377, 431
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	1 cut(s)	48
BmuI	ACTGGG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	431
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	9, 558
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	7 cut(s)	115, 286, 292, 358, 415, 527, 604
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	2 cut(s)	287, 377
BseDI	CCNNGG	2 cut(s)	9, 558
BseGI	GGATG	2 cut(s)	105, 568
BseLI	CCNNNNNNNGG	7 cut(s)	115, 286, 292, 358, 415, 527, 604
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	338
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	2 cut(s)	244, 484
BsgI	GTGCAG	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	2 cut(s)	375, 563
BslI	CCNNNNNNNGG	7 cut(s)	115, 286, 292, 358, 415, 527, 604
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	2 cut(s)	375, 563
Bso31I	GGTCTC	1 cut(s)	209
Bsp143I	GATC	2 cut(s)	282, 355
Bsp1720I	GCTNAGC	1 cut(s)	347
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	273, 536
BspCNI	CTCAG	1 cut(s)	339
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	209
BsrBI	CCGCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	552
BsrI	ACTGG	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	9, 558
BssMI	GATC	2 cut(s)	282, 355
BssT1I	CCWWGG	2 cut(s)	9, 558
Bst2UI	CCWGG	2 cut(s)	287, 377
Bst4CI	ACNGT	1 cut(s)	527
Bst6I	CTCTTC	2 cut(s)	106, 597
BstDEI	CTNAG	2 cut(s)	347, 449
BstDSI	CCRYGG	1 cut(s)	9
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	105, 568
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	2 cut(s)	285, 358
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	2 cut(s)	282, 355
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 238, 264
BstNI	CCWGG	2 cut(s)	287, 377
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	285, 375, 429
BstSFI	CTRYAG	1 cut(s)	230
BstV1I	GCAGC	2 cut(s)	244, 484
BstX2I	RGATCY	2 cut(s)	282, 355
BstYI	RGATCY	2 cut(s)	282, 355
BtgI	CCRYGG	1 cut(s)	9
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	105, 568
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	10, 82, 182, 445
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	2 cut(s)	347, 449
DpnI	GATC	2 cut(s)	284, 357
DpnII	GATC	2 cut(s)	282, 355
Eam1104I	CTCTTC	2 cut(s)	106, 597
EarI	CTCTTC	2 cut(s)	106, 597
Eco130I	CCWWGG	2 cut(s)	9, 558
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	207
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	285, 375
EcoT14I	CCWWGG	2 cut(s)	9, 558
ErhI	CCWWGG	2 cut(s)	9, 558
FaeI	CATG	4 cut(s)	13, 85, 185, 448
FaqI	GGGAC	2 cut(s)	375, 563
FatI	CATG	4 cut(s)	9, 81, 181, 444
Fnu4HI	GCNGC	3 cut(s)	233, 498, 537
FokI	GGATG	2 cut(s)	92, 575
Fsp4HI	GCNGC	3 cut(s)	233, 498, 537
FspBI	CTAG	3 cut(s)	138, 353, 591
FspI	TGCGCA	1 cut(s)	506
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	3 cut(s)	233, 498, 537
HapII	CCGG	1 cut(s)	430
HhaI	GCGC	1 cut(s)	507
Hin1II	CATG	4 cut(s)	13, 85, 185, 448
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HincII	GTYRAC	2 cut(s)	6, 31
HindII	GTYRAC	2 cut(s)	6, 31
HinfI	GANTC	1 cut(s)	594
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	269
Hpy166II	GTNNAC	4 cut(s)	6, 31, 179, 317
Hpy188I	TCNGA	3 cut(s)	37, 114, 599
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	4 cut(s)	6, 31, 179, 317
HpyAV	CCTTC	4 cut(s)	97, 109, 119, 409
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	4 cut(s)	61, 232, 500, 612
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 238, 264
HpyF3I	CTNAG	2 cut(s)	347, 449
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	4 cut(s)	13, 85, 185, 448
HspAI	GCGC	1 cut(s)	505
Kzo9I	GATC	2 cut(s)	282, 355
Lsp1109I	GCAGC	2 cut(s)	244, 484
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	138, 353, 591
MaeII	ACGT	1 cut(s)	24
MalI	GATC	2 cut(s)	284, 357
MbiI	CCGCTC	1 cut(s)	275
MboI	GATC	2 cut(s)	282, 355
MboII	GAAGA	6 cut(s)	93, 131, 200, 233, 262, 614
MflI	RGATCY	2 cut(s)	282, 355
MluCI	AATT	3 cut(s)	298, 481, 637
MlyI	GAGTC	1 cut(s)	588
MnlI	CCTC	9 cut(s)	8, 53, 61, 134, 142, 252, 330, 524, 598
MseI	TTAA	2 cut(s)	306, 471
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	3 cut(s)	287, 377, 431
MvaI	CCWGG	2 cut(s)	287, 377
MwoI	GCNNNNNNNGC	3 cut(s)	91, 238, 264
NciI	CCSGG	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	2 cut(s)	282, 355
NlaIII	CATG	4 cut(s)	13, 85, 185, 448
NsbI	TGCGCA	1 cut(s)	506
NspI	RCATGY	1 cut(s)	185
PflMI	CCANNNNNTGG	1 cut(s)	292
PfoI	TCCNGGA	1 cut(s)	285
PkrI	GCNGC	3 cut(s)	234, 499, 538
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
Psp6I	CCWGG	2 cut(s)	285, 375
PspGI	CCWGG	2 cut(s)	285, 375
PstI	CTGCAG	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	282, 355
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	306, 471
SatI	GCNGC	3 cut(s)	233, 498, 537
Sau3AI	GATC	2 cut(s)	282, 355
ScaI	AGTACT	1 cut(s)	197
SchI	GAGTC	1 cut(s)	588
ScrFI	CCNGG	3 cut(s)	287, 377, 431
SetI	ASST	9 cut(s)	19, 27, 348, 381, 457, 499, 535, 609, 628
SfaNI	GCATC	1 cut(s)	48
SfcI	CTRYAG	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	324
Sse9I	AATT	3 cut(s)	298, 481, 637
SsiI	CCGC	2 cut(s)	273, 536
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	3 cut(s)	138, 353, 591
StyD4I	CCNGG	3 cut(s)	285, 375, 429
StyI	CCWWGG	2 cut(s)	9, 558
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	582
TaqII	GACCGA	1 cut(s)	233
TasI	AATT	3 cut(s)	298, 481, 637
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	2 cut(s)	306, 471
Tru9I	TTAA	2 cut(s)	306, 471
TscAI	CASTG	1 cut(s)	507
TseI	GCWGC	2 cut(s)	232, 497
TspDTI	ATGAA	4 cut(s)	70, 428, 566, 579
TspRI	CASTG	1 cut(s)	507
Van91I	CCANNNNNTGG	1 cut(s)	292
XagI	CCTNNNNNAGG	1 cut(s)	113
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	625
XspI	CTAG	3 cut(s)	138, 353, 591
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.