Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

3125763 .. 3131658

Gene Structure 5896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1025900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGTATGGGCACTGCCAAGTAATGTCAAGCATGGCCATGGGAGGTGGCAACGTGGTCAGCCCGGAAACCCTCTTCTCGTCGCCGATCCAGAACCCTAACTTCAACTTCATGCCTACCCATCATCAGCTGCCCTTCCAGCCTTTCTCTTCCATTCTCAGTCCTCCTAAGGAAGAAAATGGGGTTCTGATGATGATGAAAGGAAAGGAAGATCAGATGATGGAGAGCGGGTCCGGGAGCGAGCAAATTGAAGAGAAATCAGGCAACGAACAAGAAGCCGACAACCAACTGCAACCGCCCAAGAAGAAACGCTACCATCGCCACACTGCTCATCAGATCCAAGAAATGGAAAATATGTTTAAGGAGTGTCCGCACCCAGACGACAAGCAGAGGATGAAACTGAGTCAAGAACTGGGGCTGAAGCCGCGTCAGGTCAAGTTCTGGTTCCAAAACCGGCGAACCCAGATGAAGGCACAACAAGATCGGTCTGATAATGTCATGCTTAGAGCGGAAAATGAGAACCTAAAGAACGAGAATTACCGGCTACAAGCAGCGCTGAGCAATATTATGTGCCCCAATTGTAAAGGTCCTGCTATGATTGCGGACATTGGCTTAGATGAACAACATCTTCGCCTTGAGAATGCTCGACTCAGAGAAGAGTTGGAACGAGTTTTCTGCTTGAATTCTCAATACACTAGTGGGCAGCAAATCCAAACAATGGCACCTGGAGCTCCACTAATGCCGGCGTTCAACTTGGATTTGGATATGAATATCTATTCAAGGCATTTCCAAGAGTACCCGATGACTTCTGCGGAAATGATTCCCATGCCTCTGTTACCACCGCATGTACCTTCTCACTACCCTGCTCCTGCTGGGAGTTGGGGTGGTGTCTTATCAGATGACGAAAAATCACTTGCAGTAGAGCTTGCGGTATCCTCAGTTGCCGAACTTATTAAGATGTGCCGGGCTGGTGAGCCTCTTTGGAGCCGGAACAATGAGAACGGGAAGGAAGTGTTAAATGTTGAAGAACATGCCCGCATATTCCCGCCATGGCCCTTGAACCTCAAGCAGCAGCCAAGTGATCAGTGCAGGACGGAAGCTACTCGCGATAGTGTTGTGGTTATCATGAATAGCATTAATCTTGTAGATGCCTTCCTTGATGCTAATAAGTGGATGGAATTATTTCCTTCTATAGTTTCAAGAGCTAAAACTGTTCAAGTTATTTCAGCAGATCCTTCAGGTCAAGCAAACGGTTCCCTTCAGCTGATGTATGCGGAATTGCAAGTTGTTTCTCCTCTGGTGCCAACCCGAGAAACTCATTTTCTACGTTATTGTCAACAAAATGAAGAGGAGGGCAGCTGGGCAATTGTTGATTTTCCCATAGATAGCTTCCATGACAACCTTCAATCATCTTTTCCCAGGTACAAGAGATGGCCGTCCGGCTGTCTTATCCAAGATATGCCCAATGGATACTCAAGGGTTACATGGATAGAACATGCACAGATAGAGGAGAAACCTGTACATCAAATATTCAGTCACTATGTCTACAGTGGGATGGCATTTGGGGCGCAACGATGGCTTGCAGTCTTACAAAGGCAATGCGAAAGGGTTGCAAGTCTCATGGCCAGAAATATATCAGACCTCGGAGTGATACCTTCACCCGAAGCACGCAAGAACATGATGAAATTGGCTCAGAGAATGATAAGAACGTTTTGTGTAAGCATGAGCACCTCCAATGGGCAGTCGTGGACGGCTATATCTGATTCCCCAGGTGACACTGTTAGAATAACCACAAGGAAAGTCACAGAAGCTGGTCAACCCATTGGGGTCATTCTCACTGCTGTTTCTACCACTTGGCTCCCTTATTCGCACTACCGTGTCTTTGAACTCCTACGGGATGAACGCCGCAGAGCTCAGCAGCTCGATGTTCTTACCAATGGGAATTCCCTACATGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAACTGCATTTCTCTTCTTCGCATAAATGTATCAAGCAACTCATCGCAGAACATAGAGATAATGCTACAAGAGAGCTGCACTGATGAGTCAGGCAGCCTGGTGGTGTATGCAACCATGGATGTTGATGGCATCCAGTTGGCAATGAGCGGAGAAGACCCATCCTGCATTCCCCTCCTTCCTCTAGGCTTTGTCATTGTCCCAGTGCAGCCTATGGAATCTAGTGCTGCCACTGCAGCTGATCATGGAACCTCATCGCCAGATCAGAATCAGGAAAAGCGCATCATGAACTCGGGTTGTTTGCTGACTGTGGGGTTTCAAGTTCTTGCCAGCACAAGCCCATCTGCAAAACTCAACCTCTCCAGTGTCACCGCGATGAACAACCATCTCTGCAACTCGGTGCAGCAGATCATTTCCGCCCTCGGTAGCAGCAACATTTGCACCACCGCTACTACTGATAATGTCAGTGTTGGCGTTATTTCTGGCGGATCTGACCATCCCACTGCTGCGACCCCGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

835

Amino Acids

92.82

Weight (kDa)

5.72

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	101 - 156	1.3e-19	Homeodomain
START	PF01852	308 - 535	3.2e-40	START domain
PDF2_C	PF25797	552 - 802	1.5e-79	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	718, 1297
AccB7I	CCANNNNNTGG	2 cut(s)	343, 715
AccBSI	CCGCTC	3 cut(s)	225, 506, 2133
AccI	GTMKAC	1 cut(s)	1542
AccII	CGCG	3 cut(s)	424, 1104, 2357
AclI	AACGTT	1 cut(s)	1706
AclWI	GGATC	4 cut(s)	79, 328, 1223, 2479
AcoI	YGGCCR	3 cut(s)	33, 1430, 1620
AcsI	RAATTY	2 cut(s)	679, 1939
AcuI	CTGAAG	3 cut(s)	437, 1218, 1241
AfaI	GTAC	4 cut(s)	794, 846, 1421, 1518
AfeI	AGCGCT	1 cut(s)	552
AfiI	CCNNNNNNNGG	4 cut(s)	343, 466, 715, 1734
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	5 cut(s)	721, 1415, 1765, 1981, 2082
AleI	CACNNNNGTG	1 cut(s)	1872
Alw21I	GWGCWC	3 cut(s)	730, 1727, 1912
Alw26I	GTCTC	1 cut(s)	1619
AlwI	GGATC	4 cut(s)	79, 328, 1223, 2479
AlwNI	CAGNNNCTG	1 cut(s)	1808
Ama87I	CYCGRG	2 cut(s)	1305, 2275
Aor51HI	AGCGCT	1 cut(s)	552
AoxI	GGCC	4 cut(s)	33, 1049, 1430, 1620
ApoI	RAATTY	2 cut(s)	679, 1939
ArsI	GACNNNNNNTTYG	2 cut(s)	1516, 1548
AseI	ATTAAT	1 cut(s)	1134
Asp700I	GAANNNNTTC	2 cut(s)	816, 1179
AspLEI	GCGC	3 cut(s)	553, 1567, 2265
AspS9I	GGNCC	3 cut(s)	228, 584, 1050
AsuC2I	CCSGG	3 cut(s)	62, 232, 962
AsuHPI	GGTGA	4 cut(s)	980, 1647, 1781, 2344
AvaI	CYCGRG	2 cut(s)	1305, 2275
AvaII	GGWCC	2 cut(s)	228, 584
AxyI	CCTNAGG	1 cut(s)	165
BaeGI	GKGCMC	2 cut(s)	12, 572
BalI	TGGCCA	2 cut(s)	35, 1622
BanI	GGYRCC	2 cut(s)	718, 1297
BanII	GRGCYC	2 cut(s)	730, 1912
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbsI	GAAGAC	1 cut(s)	2145
Bbv12I	GWGCWC	3 cut(s)	730, 1727, 1912
BceAI	ACGGC	2 cut(s)	1417, 1764
BcgI	CGANNNNNNTGC	4 cut(s)	654, 688, 1589, 1623
BciT130I	CCWGG	5 cut(s)	723, 1417, 1767, 1983, 2084
BciVI	GTATCC	2 cut(s)	940, 1460
BclI	TGATCA	2 cut(s)	1078, 2224
BcnI	CCSGG	3 cut(s)	62, 232, 962
BcoDI	GTCTC	1 cut(s)	1619
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	3 cut(s)	693, 2168, 2205
BfmI	CTRYAG	3 cut(s)	1188, 1543, 2217
BfoI	RGCGCY	1 cut(s)	554
BfuI	GTATCC	2 cut(s)	940, 1460
BlpI	GCTNAGC	2 cut(s)	554, 1911
Bme1390I	CCNGG	8 cut(s)	62, 232, 723, 962, 1417, 1767, 1983, 2084
Bme18I	GGWCC	2 cut(s)	228, 584
BmeT110I	CYCGRG	2 cut(s)	1305, 2275
BmgT120I	GGNCC	3 cut(s)	228, 584, 1050
BmiI	GGNNCC	8 cut(s)	229, 443, 720, 983, 1252, 1299, 1856, 2233
BmrFI	CCNGG	8 cut(s)	62, 232, 723, 962, 1417, 1767, 1983, 2084
BmrI	ACTGGG	2 cut(s)	419, 2180
BmsI	GCATC	4 cut(s)	1135, 1147, 2124, 2274
BmuI	ACTGGG	2 cut(s)	419, 2180
BpiI	GAAGAC	1 cut(s)	2145
BpmI	CTGGAG	2 cut(s)	744, 2329
Bpu1102I	GCTNAGC	2 cut(s)	554, 1911
BpuEI	CTTGAG	3 cut(s)	653, 1046, 1456
BpuMI	CCSGG	3 cut(s)	62, 232, 962
BsaBI	GATNNNNATC	1 cut(s)	2250
BsaJI	CCNNGG	7 cut(s)	36, 1046, 1415, 1639, 1765, 2100, 2404
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 865, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 466, 715, 1734
Bse118I	RCCGGY	3 cut(s)	450, 537, 739
Bse1I	ACTGG	4 cut(s)	414, 2119, 2186, 2346
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	3 cut(s)	1601, 1962, 2133
Bse8I	GATNNNNATC	1 cut(s)	2250
BseBI	CCWGG	5 cut(s)	723, 1417, 1767, 1983, 2084
BseDI	CCNNGG	7 cut(s)	36, 1046, 1415, 1639, 1765, 2100, 2404
BseGI	GGATG	9 cut(s)	396, 1176, 1557, 1900, 1978, 2110, 2115, 2144, 2479
BseJI	GATNNNNATC	1 cut(s)	2250
BseLI	CCNNNNNNNGG	4 cut(s)	343, 466, 715, 1734
BseMI	GCAATG	3 cut(s)	1601, 1962, 2133
BseMII	CTCAG	7 cut(s)	169, 389, 545, 661, 948, 1703, 1925
BseNI	ACTGG	4 cut(s)	414, 2119, 2186, 2346
BseRI	GAGGAG	3 cut(s)	1281, 1361, 1520
BseSI	GKGCMC	2 cut(s)	12, 572
BseYI	CCCAGC	2 cut(s)	869, 1356
BsgI	GTGCAG	4 cut(s)	1105, 2047, 2210, 2405
Bsh1236I	CGCG	3 cut(s)	424, 1104, 2357
BshFI	GGCC	4 cut(s)	35, 1051, 1432, 1622
BshNI	GGYRCC	2 cut(s)	718, 1297
BsiHKAI	GWGCWC	3 cut(s)	730, 1727, 1912
BsiHKCI	CYCGRG	2 cut(s)	1305, 2275
BsiSI	CCGG	8 cut(s)	62, 231, 451, 538, 740, 961, 985, 1437
BslFI	GGGAC	1 cut(s)	2168
BslI	CCNNNNNNNGG	4 cut(s)	343, 466, 715, 1734
BsmAI	GTCTC	1 cut(s)	1619
BsmFI	GGGAC	1 cut(s)	2168
BsmI	GAATGC	2 cut(s)	643, 2151
BsnI	GGCC	4 cut(s)	35, 1051, 1432, 1622
BsoBI	CYCGRG	2 cut(s)	1305, 2275
Bsp1286I	GDGCHC	5 cut(s)	12, 572, 730, 1727, 1912
Bsp1407I	TGTACA	1 cut(s)	1516
Bsp1720I	GCTNAGC	2 cut(s)	554, 1911
Bsp19I	CCATGG	3 cut(s)	36, 1046, 2100
Bsp68I	TCGCGA	1 cut(s)	1104
BspANI	GGCC	4 cut(s)	35, 1051, 1432, 1622
BspCNI	CTCAG	7 cut(s)	168, 390, 546, 660, 947, 1702, 1924
BspFNI	CGCG	3 cut(s)	424, 1104, 2357
BspHI	TCATGA	2 cut(s)	1122, 2268
BspLI	GGNNCC	8 cut(s)	229, 443, 720, 983, 1252, 1299, 1856, 2233
BspMAI	CTGCAG	1 cut(s)	2221
BspPI	GGATC	4 cut(s)	79, 328, 1223, 2479
BspT107I	GGYRCC	2 cut(s)	718, 1297
BsrBI	CCGCTC	3 cut(s)	225, 506, 2133
BsrDI	GCAATG	3 cut(s)	1601, 1962, 2133
BsrFI	RCCGGY	3 cut(s)	450, 537, 739
BsrGI	TGTACA	1 cut(s)	1516
BsrI	ACTGG	4 cut(s)	414, 2119, 2186, 2346
BssAI	RCCGGY	3 cut(s)	450, 537, 739
BssECI	CCNNGG	7 cut(s)	36, 1046, 1415, 1639, 1765, 2100, 2404
BssT1I	CCWWGG	3 cut(s)	36, 1046, 2100
Bst2UI	CCWGG	5 cut(s)	723, 1417, 1767, 1983, 2084
Bst4CI	ACNGT	6 cut(s)	1210, 1250, 1547, 1777, 1874, 2293
Bst6I	CTCTTC	6 cut(s)	77, 151, 243, 648, 1338, 2004
BstAPI	GCANNNNNTGC	1 cut(s)	2421
BstAUI	TGTACA	1 cut(s)	1516
BstC8I	GCNNGC	7 cut(s)	239, 741, 924, 1033, 1578, 1666, 2314
BstDSI	CCRYGG	3 cut(s)	36, 1046, 2100
BstF5I	GGATG	9 cut(s)	396, 1176, 1557, 1900, 1978, 2110, 2115, 2144, 2479
BstFNI	CGCG	3 cut(s)	424, 1104, 2357
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	3 cut(s)	553, 1567, 2265
BstMAI	GTCTC	1 cut(s)	1619
BstNI	CCWGG	5 cut(s)	723, 1417, 1767, 1983, 2084
BstNSI	RCATGY	3 cut(s)	845, 1031, 1496
BstSCI	CCNGG	8 cut(s)	60, 230, 721, 960, 1415, 1765, 1981, 2082
BstSFI	CTRYAG	3 cut(s)	1188, 1543, 2217
BstSLI	GKGCMC	2 cut(s)	12, 572
BstUI	CGCG	3 cut(s)	424, 1104, 2357
BstV2I	GAAGAC	1 cut(s)	2145
BstX2I	RGATCY	3 cut(s)	333, 1228, 2471
BstYI	RGATCY	3 cut(s)	333, 1228, 2471
Bsu36I	CCTNAGG	1 cut(s)	165
BsuI	GTATCC	2 cut(s)	940, 1460
BsuRI	GGCC	4 cut(s)	35, 1051, 1432, 1622
BtgI	CCRYGG	3 cut(s)	36, 1046, 2100
BtgZI	GCGATG	4 cut(s)	299, 2013, 2223, 2372
BtsCI	GGATG	9 cut(s)	396, 1176, 1557, 1900, 1978, 2110, 2115, 2144, 2479
BtsI	GCAGTG	5 cut(s)	10, 321, 1833, 2214, 2484
BtuMI	TCGCGA	1 cut(s)	1104
Cac8I	GCNNGC	7 cut(s)	239, 741, 924, 1033, 1578, 1666, 2314
CaiI	CAGNNNCTG	1 cut(s)	1808
CciI	TCATGA	2 cut(s)	1122, 2268
CfoI	GCGC	3 cut(s)	553, 1567, 2265
Cfr10I	RCCGGY	3 cut(s)	450, 537, 739
Cfr13I	GGNCC	3 cut(s)	228, 584, 1050
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	4 cut(s)	793, 845, 1420, 1517
CviQI	GTAC	4 cut(s)	793, 845, 1420, 1517
EaeI	YGGCCR	3 cut(s)	33, 1430, 1620
Eam1104I	CTCTTC	6 cut(s)	77, 151, 243, 648, 1338, 2004
EarI	CTCTTC	6 cut(s)	77, 151, 243, 648, 1338, 2004
EciI	GGCGGA	2 cut(s)	2389, 2484
Ecl136II	GAGCTC	2 cut(s)	728, 1910
Eco130I	CCWWGG	3 cut(s)	36, 1046, 2100
Eco24I	GRGCYC	2 cut(s)	730, 1912
Eco47I	GGWCC	2 cut(s)	228, 584
Eco47III	AGCGCT	1 cut(s)	552
Eco53kI	GAGCTC	2 cut(s)	728, 1910
Eco57I	CTGAAG	3 cut(s)	437, 1218, 1241
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	2 cut(s)	1305, 2275
EcoICRI	GAGCTC	2 cut(s)	728, 1910
EcoO109I	RGGNCCY	1 cut(s)	584
EcoRI	GAATTC	2 cut(s)	679, 1939
EcoRII	CCWGG	5 cut(s)	721, 1415, 1765, 1981, 2082
EcoT14I	CCWWGG	3 cut(s)	36, 1046, 2100
EcoT38I	GRGCYC	2 cut(s)	730, 1912
ErhI	CCWWGG	3 cut(s)	36, 1046, 2100
FaqI	GGGAC	1 cut(s)	2168
FauI	CCCGC	3 cut(s)	218, 1040, 1050
FbaI	TGATCA	2 cut(s)	1078, 2224
FblI	GTMKAC	1 cut(s)	1542
FokI	GGATG	9 cut(s)	403, 1183, 1564, 1907, 1965, 2102, 2117, 2131, 2466
FriOI	GRGCYC	2 cut(s)	730, 1912
FspBI	CTAG	3 cut(s)	693, 2168, 2205
GlaI	GCGC	3 cut(s)	552, 1566, 2264
GsaI	CCCAGC	2 cut(s)	873, 1360
GsuI	CTGGAG	2 cut(s)	744, 2329
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	4 cut(s)	35, 1051, 1432, 1622
HapII	CCGG	8 cut(s)	62, 231, 451, 538, 740, 961, 985, 1437
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	553, 1567, 2265
Hin6I	GCGC	3 cut(s)	551, 1565, 2263
HinP1I	GCGC	3 cut(s)	551, 1565, 2263
HincII	GTYRAC	2 cut(s)	1334, 1814
HindII	GTYRAC	2 cut(s)	1334, 1814
HinfI	GANTC	7 cut(s)	400, 645, 817, 1760, 2072, 2201, 2251
HpaII	CCGG	8 cut(s)	62, 231, 451, 538, 740, 961, 985, 1437
HphI	GGTGA	4 cut(s)	980, 1647, 1781, 2344
Hpy166II	GTNNAC	4 cut(s)	1334, 1543, 1746, 1814
Hpy188III	TCNNGA	7 cut(s)	88, 404, 1103, 1123, 1197, 2255, 2269
Hpy8I	GTNNAC	4 cut(s)	1334, 1543, 1746, 1814
Hpy99I	CGWCG	1 cut(s)	82
HpyCH4III	ACNGT	6 cut(s)	1210, 1250, 1547, 1777, 1874, 2293
HpyCH4IV	ACGT	3 cut(s)	51, 1324, 1706
HpySE526I	ACGT	3 cut(s)	51, 1324, 1706
HspAI	GCGC	3 cut(s)	551, 1565, 2263
KroI	GCCGGC	1 cut(s)	739
KroNI	GCCGGC	1 cut(s)	741
Ksp22I	TGATCA	2 cut(s)	1078, 2224
LmnI	GCTCC	6 cut(s)	234, 725, 733, 868, 981, 1860
LweI	GCATC	4 cut(s)	1135, 1147, 2124, 2274
MaeI	CTAG	3 cut(s)	693, 2168, 2205
MaeII	ACGT	3 cut(s)	51, 1324, 1706
MaeIII	GTNAC	6 cut(s)	831, 1477, 1532, 1769, 1798, 2350
MbiI	CCGCTC	3 cut(s)	225, 506, 2133
MfeI	CAATTG	2 cut(s)	574, 1362
MflI	RGATCY	3 cut(s)	333, 1228, 2471
MhlI	GDGCHC	5 cut(s)	12, 572, 730, 1727, 1912
MlsI	TGGCCA	2 cut(s)	35, 1622
MluCI	AATT	9 cut(s)	243, 532, 574, 679, 1175, 1274, 1362, 1682, 1939
MluNI	TGGCCA	2 cut(s)	35, 1622
MlyI	GAGTC	3 cut(s)	409, 639, 2081
MmeI	TCCRAC	1 cut(s)	639
Mox20I	TGGCCA	2 cut(s)	35, 1622
MroNI	GCCGGC	1 cut(s)	739
MroXI	GAANNNNTTC	2 cut(s)	816, 1179
MscI	TGGCCA	2 cut(s)	35, 1622
MseI	TTAA	4 cut(s)	357, 951, 1013, 1134
MslI	CAYNNNNRTG	3 cut(s)	35, 1872, 2357
Msp20I	TGGCCA	2 cut(s)	35, 1622
MspA1I	CMGCKG	4 cut(s)	127, 1261, 1356, 2222
MspI	CCGG	8 cut(s)	62, 231, 451, 538, 740, 961, 985, 1437
MspR9I	CCNGG	8 cut(s)	62, 232, 723, 962, 1417, 1767, 1983, 2084
MunI	CAATTG	2 cut(s)	574, 1362
Mva1269I	GAATGC	2 cut(s)	643, 2151
MvaI	CCWGG	5 cut(s)	723, 1417, 1767, 1983, 2084
MvnI	CGCG	3 cut(s)	424, 1104, 2357
NaeI	GCCGGC	1 cut(s)	741
NciI	CCSGG	3 cut(s)	62, 232, 962
NcoI	CCATGG	3 cut(s)	36, 1046, 2100
NgoMIV	GCCGGC	1 cut(s)	739
NlaIV	GGNNCC	8 cut(s)	229, 443, 720, 983, 1252, 1299, 1856, 2233
NmuCI	GTSAC	4 cut(s)	1532, 1769, 1798, 2350
NruI	TCGCGA	1 cut(s)	1104
NspI	RCATGY	3 cut(s)	845, 1031, 1496
OliI	CACNNNNGTG	1 cut(s)	1872
PagI	TCATGA	2 cut(s)	1122, 2268
PctI	GAATGC	2 cut(s)	643, 2151
PdiI	GCCGGC	1 cut(s)	741
PdmI	GAANNNNTTC	2 cut(s)	816, 1179
PfeI	GAWTC	4 cut(s)	817, 1760, 2201, 2251
PflMI	CCANNNNNTGG	2 cut(s)	343, 715
PfoI	TCCNGGA	2 cut(s)	230, 1981
PleI	GAGTC	3 cut(s)	408, 639, 2080
PpsI	GAGTC	3 cut(s)	408, 639, 2080
PpuMI	RGGWCCY	1 cut(s)	584
PshBI	ATTAAT	1 cut(s)	1134
Psp124BI	GAGCTC	2 cut(s)	730, 1912
Psp1406I	AACGTT	1 cut(s)	1706
Psp5II	RGGWCCY	1 cut(s)	584
Psp6I	CCWGG	5 cut(s)	721, 1415, 1765, 1981, 2082
PspFI	CCCAGC	2 cut(s)	869, 1356
PspGI	CCWGG	5 cut(s)	721, 1415, 1765, 1981, 2082
PspN4I	GGNNCC	8 cut(s)	229, 443, 720, 983, 1252, 1299, 1856, 2233
PspPI	GGNCC	3 cut(s)	228, 584, 1050
PspPPI	RGGWCCY	1 cut(s)	584
PsrI	GAACNNNNNNTAC	2 cut(s)	518, 550
PstI	CTGCAG	1 cut(s)	2221
PstNI	CAGNNNCTG	1 cut(s)	1808
PsuI	RGATCY	3 cut(s)	333, 1228, 2471
PvuII	CAGCTG	4 cut(s)	127, 1261, 1356, 2222
RruI	TCGCGA	1 cut(s)	1104
RsaI	GTAC	4 cut(s)	794, 846, 1421, 1518
RsaNI	GTAC	4 cut(s)	793, 845, 1420, 1517
RseI	CAYNNNNRTG	3 cut(s)	35, 1872, 2357
SacI	GAGCTC	2 cut(s)	730, 1912
SaqAI	TTAA	4 cut(s)	357, 951, 1013, 1134
Sau96I	GGNCC	3 cut(s)	228, 584, 1050
SchI	GAGTC	3 cut(s)	409, 639, 2081
ScrFI	CCNGG	8 cut(s)	62, 232, 723, 962, 1417, 1767, 1983, 2084
SduI	GDGCHC	5 cut(s)	12, 572, 730, 1727, 1912
SfaNI	GCATC	4 cut(s)	1135, 1147, 2124, 2274
SfcI	CTRYAG	3 cut(s)	1188, 1543, 2217
SinI	GGWCC	2 cut(s)	228, 584
SmiMI	CAYNNNNRTG	3 cut(s)	35, 1872, 2357
SmlI	CTYRAG	3 cut(s)	632, 1061, 1471
SmoI	CTYRAG	3 cut(s)	632, 1061, 1471
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	9 cut(s)	243, 532, 574, 679, 1175, 1274, 1362, 1682, 1939
SspI	AATATT	2 cut(s)	562, 1527
SspMI	CTAG	3 cut(s)	693, 2168, 2205
SstI	GAGCTC	2 cut(s)	730, 1912
StyD4I	CCNGG	8 cut(s)	60, 230, 721, 960, 1415, 1765, 1981, 2082
StyI	CCWWGG	3 cut(s)	36, 1046, 2100
TaaI	ACNGT	6 cut(s)	1210, 1250, 1547, 1777, 1874, 2293
TaiI	ACGT	3 cut(s)	54, 1327, 1709
TaqI	TCGA	2 cut(s)	643, 1920
TaqII	GACCGA	1 cut(s)	471
TasI	AATT	9 cut(s)	243, 532, 574, 679, 1175, 1274, 1362, 1682, 1939
TatI	WGTACW	1 cut(s)	1516
TauI	GCSGC	2 cut(s)	424, 1905
TfiI	GAWTC	4 cut(s)	817, 1760, 2201, 2251
Tru1I	TTAA	4 cut(s)	357, 951, 1013, 1134
Tru9I	TTAA	4 cut(s)	357, 951, 1013, 1134
TseFI	GTSAC	4 cut(s)	1532, 1769, 1798, 2350
Tsp45I	GTSAC	4 cut(s)	1532, 1769, 1798, 2350
TspGWI	ACGGA	1 cut(s)	1106
Van91I	CCANNNNNTGG	2 cut(s)	343, 715
VpaK11BI	GGWCC	2 cut(s)	228, 584
VspI	ATTAAT	1 cut(s)	1134
XapI	RAATTY	2 cut(s)	679, 1939
XceI	RCATGY	3 cut(s)	845, 1031, 1496
XmiI	GTMKAC	1 cut(s)	1542
XmnI	GAANNNNTTC	2 cut(s)	816, 1179
XspI	CTAG	3 cut(s)	693, 2168, 2205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.