Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8458813.1

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

607 .. 1809

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8458813.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 634 bp

atgggaggtgggaacgtagtcaactctgaaaccctcttttcctcgccgatgcaaaaccctaacttcaacttcatgcccttccagcctttctcttccatccttccgaaggaagaaactgggcttatgactagaggaaaggaggagatgatggagagtgggtctgggagtgaacatgctgaagaaaagtactctggcaacgaacaagagaccgaagaacaactgcagcaacagcctcccaagaagaaacgctaccatcgccataccgctcaccagatccaggaaatggaaaatttatttaaggagtgtccacacccagatgacaagcagaggcaaaagctgagcctagatctgggactgaaaccacgccaggtcaagttttggtttcaaaatcgccgaacccaaatgaaggcacaacaagaccgggctgataatgtcatgcttagagctgaaaatgatacccttaaaaatgagaattacaggcttcaagctgcactgcgcaatattatatgccctaactgtggaggtgcggctatgattggggacattgccttggatgaacaccaacttcatctcgaaaatgctagactccgagaagaggtatgcaactccattgtagctatggcaggaaattgta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

211

Amino Acids

24.2

Weight (kDa)

6.0

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	497
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccBSI	CCGCTC	1 cut(s)	266
AciI	CCGC	2 cut(s)	264, 527
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	7 cut(s)	106, 277, 283, 349, 406, 518, 595
AgsI	TTSAA	3 cut(s)	67, 386, 485
AjnI	CCWGG	2 cut(s)	276, 366
AluBI	AGCT	4 cut(s)	337, 446, 488, 617
AluI	AGCT	4 cut(s)	337, 446, 488, 617
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	268
ApeKI	GCWGC	2 cut(s)	223, 488
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	498
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	260
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BbvI	GCAGC	2 cut(s)	235, 475
BccI	CCATC	3 cut(s)	104, 142, 261
BciT130I	CCWGG	2 cut(s)	278, 368
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	3 cut(s)	129, 344, 582
BfmI	CTRYAG	1 cut(s)	221
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	224, 489, 528
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	3 cut(s)	225, 490, 529
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	278, 368, 422
BmrFI	CCNGG	3 cut(s)	278, 368, 422
BmrI	ACTGGG	1 cut(s)	126
BmsI	GCATC	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuMI	CCSGG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	7 cut(s)	106, 277, 283, 349, 406, 518, 595
Bse1I	ACTGG	1 cut(s)	121
Bse3DI	GCAATG	1 cut(s)	543
BseBI	CCWGG	2 cut(s)	278, 368
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	2 cut(s)	96, 559
BseLI	CCNNNNNNNGG	7 cut(s)	106, 277, 283, 349, 406, 518, 595
BseMI	GCAATG	1 cut(s)	543
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	235, 475
BsgI	GTGCAG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	2 cut(s)	366, 554
BslI	CCNNNNNNNGG	7 cut(s)	106, 277, 283, 349, 406, 518, 595
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	366, 554
Bso31I	GGTCTC	1 cut(s)	200
Bsp143I	GATC	2 cut(s)	273, 346
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	2 cut(s)	264, 527
BspCNI	CTCAG	1 cut(s)	330
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	200
BsrBI	CCGCTC	1 cut(s)	266
BsrDI	GCAATG	1 cut(s)	543
BsrI	ACTGG	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	273, 346
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	2 cut(s)	278, 368
Bst4CI	ACNGT	1 cut(s)	518
Bst6I	CTCTTC	2 cut(s)	97, 588
BstDEI	CTNAG	2 cut(s)	338, 440
BstENI	CCTNNNNNAGG	1 cut(s)	104
BstF5I	GGATG	2 cut(s)	96, 559
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	2 cut(s)	276, 349
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	273, 346
BstMWI	GCNNNNNNNGC	3 cut(s)	82, 229, 255
BstNI	CCWGG	2 cut(s)	278, 368
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	3 cut(s)	276, 366, 420
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	235, 475
BstX2I	RGATCY	2 cut(s)	273, 346
BstYI	RGATCY	2 cut(s)	273, 346
BtgZI	GCGATG	1 cut(s)	239
BtsCI	GGATG	2 cut(s)	96, 559
BtsI	GCAGTG	1 cut(s)	491
BtsIMutI	CAGTG	1 cut(s)	491
CfoI	GCGC	1 cut(s)	498
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	73, 173, 436
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	2 cut(s)	338, 440
DpnI	GATC	2 cut(s)	275, 348
DpnII	GATC	2 cut(s)	273, 346
Eam1104I	CTCTTC	2 cut(s)	97, 588
EarI	CTCTTC	2 cut(s)	97, 588
Eco130I	CCWWGG	1 cut(s)	549
Eco31I	GGTCTC	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	198
EcoNI	CCTNNNNNAGG	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	276, 366
EcoT14I	CCWWGG	1 cut(s)	549
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	76, 176, 439
FaqI	GGGAC	2 cut(s)	366, 554
FatI	CATG	3 cut(s)	72, 172, 435
Fnu4HI	GCNGC	3 cut(s)	224, 489, 528
FokI	GGATG	2 cut(s)	83, 566
Fsp4HI	GCNGC	3 cut(s)	224, 489, 528
FspBI	CTAG	3 cut(s)	129, 344, 582
FspI	TGCGCA	1 cut(s)	497
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	3 cut(s)	224, 489, 528
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	3 cut(s)	76, 176, 439
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	1 cut(s)	585
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	3 cut(s)	22, 170, 308
Hpy188I	TCNGA	3 cut(s)	28, 105, 590
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	3 cut(s)	22, 170, 308
HpyAV	CCTTC	4 cut(s)	88, 100, 110, 400
HpyCH4III	ACNGT	1 cut(s)	518
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	4 cut(s)	52, 223, 491, 603
HpyF10VI	GCNNNNNNNGC	3 cut(s)	82, 229, 255
HpyF3I	CTNAG	2 cut(s)	338, 440
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	76, 176, 439
HspAI	GCGC	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	273, 346
Lsp1109I	GCAGC	2 cut(s)	235, 475
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	3 cut(s)	129, 344, 582
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	275, 348
MbiI	CCGCTC	1 cut(s)	266
MboI	GATC	2 cut(s)	273, 346
MboII	GAAGA	6 cut(s)	84, 122, 191, 224, 253, 605
MflI	RGATCY	2 cut(s)	273, 346
MluCI	AATT	3 cut(s)	289, 472, 628
MlyI	GAGTC	1 cut(s)	579
MnlI	CCTC	8 cut(s)	44, 52, 125, 133, 243, 321, 515, 589
MseI	TTAA	2 cut(s)	297, 462
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	3 cut(s)	278, 368, 422
MvaI	CCWGG	2 cut(s)	278, 368
MwoI	GCNNNNNNNGC	3 cut(s)	82, 229, 255
NciI	CCSGG	1 cut(s)	422
NdeII	GATC	2 cut(s)	273, 346
NlaIII	CATG	3 cut(s)	76, 176, 439
NsbI	TGCGCA	1 cut(s)	497
NspI	RCATGY	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	3 cut(s)	225, 490, 529
PleI	GAGTC	1 cut(s)	579
PpsI	GAGTC	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	276, 366
PspGI	CCWGG	2 cut(s)	276, 366
PstI	CTGCAG	1 cut(s)	225
PsuI	RGATCY	2 cut(s)	273, 346
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	297, 462
SatI	GCNGC	3 cut(s)	224, 489, 528
Sau3AI	GATC	2 cut(s)	273, 346
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	3 cut(s)	278, 368, 422
SetI	ASST	9 cut(s)	10, 18, 339, 372, 448, 490, 526, 600, 619
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	315
Sse9I	AATT	3 cut(s)	289, 472, 628
SsiI	CCGC	2 cut(s)	264, 527
SspI	AATATT	1 cut(s)	502
SspMI	CTAG	3 cut(s)	129, 344, 582
StyD4I	CCNGG	3 cut(s)	276, 366, 420
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	1 cut(s)	518
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	573
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	289, 472, 628
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	297, 462
Tru9I	TTAA	2 cut(s)	297, 462
TscAI	CASTG	1 cut(s)	498
TseI	GCWGC	2 cut(s)	223, 488
TspDTI	ATGAA	4 cut(s)	61, 419, 557, 570
TspRI	CASTG	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	104
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	616
XspI	CTAG	3 cut(s)	129, 344, 582
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.