Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

38229437 .. 38230260

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1280600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGAGAATTTGTTTAAGGAGTGTCCGCACCCAGACGACAAGCAGAGGATGAAACTGAGTCAAGACCTGGGGCTGAAGCCGCGCCAGGTCAAGTTCTGGTTCCAAAACCGACGAACCCAAATGAAGGCACAACAAGATCGGTCTGATAATGTTATGCTTAGAGCGGAAAATGAGAACCTAAAGAACGAGAATTACCGGCCACAAGCAGCGCTATGCAATATTATGTGCCCTGATTGTGGAGGTCCTGCTATGATTGGGGACTGTTGGGGGTTAAAAAGACTTCACTACTTTGGAGACGCTTATCTCACAAAGAAGAATGTAATGCAGCGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

112

Amino Acids

13.11

Weight (kDa)

9.22

Isoelectric Point (pI)

45.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	1 - 42	5.6e-16	Homeodomain
Homeobox_KN	PF05920	7 - 39	7.7e-06	Homeobox KN domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccII	CGCG	1 cut(s)	82
AciI	CCGC	3 cut(s)	26, 80, 164
AcoI	YGGCCR	1 cut(s)	197
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	95
AfeI	AGCGCT	1 cut(s)	210
AfiI	CCNNNNNNNGG	2 cut(s)	124, 236
AjnI	CCWGG	2 cut(s)	66, 84
Alw26I	GTCTC	1 cut(s)	288
Aor51HI	AGCGCT	1 cut(s)	210
AoxI	GGCC	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	206, 325
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	84, 211
AspS9I	GGNCC	1 cut(s)	242
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	230
BbvI	GCAGC	1 cut(s)	218
BciT130I	CCWGG	2 cut(s)	68, 86
BcoDI	GTCTC	1 cut(s)	288
BfoI	RGCGCY	1 cut(s)	212
BisI	GCNGC	3 cut(s)	80, 207, 326
BlsI	GCNGC	3 cut(s)	81, 208, 327
Bme1390I	CCNGG	2 cut(s)	68, 86
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	2 cut(s)	68, 86
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 236
Bse118I	RCCGGY	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	68, 86
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	124, 236
BseMII	CTCAG	1 cut(s)	47
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	218
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	1 cut(s)	199
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	124, 236
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	3 cut(s)	26, 80, 164
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	48
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	101
BsrBI	CCGCTC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	68, 86
Bst4CI	ACNGT	1 cut(s)	263
BstDEI	CTNAG	2 cut(s)	56, 158
BstF5I	GGATG	1 cut(s)	54
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	212
BstHHI	GCGC	2 cut(s)	84, 211
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	68, 86
BstSCI	CCNGG	2 cut(s)	66, 84
BstSLI	GKGCMC	1 cut(s)	230
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	54
CfoI	GCGC	2 cut(s)	84, 211
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	1 cut(s)	242
CseI	GACGC	1 cut(s)	305
CviJI	RGCY	3 cut(s)	73, 79, 199
CviKI_1	RGCY	3 cut(s)	73, 79, 199
DdeI	CTNAG	2 cut(s)	56, 158
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	242
Eco47III	AGCGCT	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	95
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	2 cut(s)	66, 84
Esp3I	CGTCTC	1 cut(s)	288
FaiI	YATR	4 cut(s)	155, 214, 224, 251
FaqI	GGGAC	1 cut(s)	272
Fnu4HI	GCNGC	3 cut(s)	80, 207, 326
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	3 cut(s)	80, 207, 326
GlaI	GCGC	2 cut(s)	83, 210
GluI	GCNGC	3 cut(s)	80, 207, 326
HaeII	RGCGCY	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	196
HgaI	GACGC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	84, 211
Hin6I	GCGC	2 cut(s)	82, 209
HinP1I	GCGC	2 cut(s)	82, 209
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	145
Hpy188III	TCNNGA	1 cut(s)	62
Hpy99I	CGWCG	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	216, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	2 cut(s)	56, 158
HspAI	GCGC	2 cut(s)	82, 209
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	9 cut(s)	45, 53, 71, 80, 82, 98, 209, 243, 258
Lsp1109I	GCAGC	1 cut(s)	218
MalI	GATC	1 cut(s)	138
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	3 cut(s)	7, 190, 331
MlyI	GAGTC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	39, 233
MseI	TTAA	2 cut(s)	15, 272
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	2 cut(s)	68, 86
MvaI	CCWGG	2 cut(s)	68, 86
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	101
PkrI	GCNGC	3 cut(s)	81, 208, 327
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	2 cut(s)	66, 84
PspGI	CCWGG	2 cut(s)	66, 84
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
PsrI	GAACNNNNNNTAC	2 cut(s)	176, 208
SaqAI	TTAA	2 cut(s)	15, 272
SatI	GCNGC	3 cut(s)	80, 207, 326
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	67
ScrFI	CCNGG	2 cut(s)	68, 86
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	69, 90, 180, 244
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	3 cut(s)	7, 190, 331
SsiI	CCGC	3 cut(s)	26, 80, 164
SspI	AATATT	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	66, 84
TaaI	ACNGT	1 cut(s)	263
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	3 cut(s)	7, 190, 331
TauI	GCSGC	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	15, 272
Tru9I	TTAA	2 cut(s)	15, 272
TseI	GCWGC	2 cut(s)	206, 325
TspDTI	ATGAA	2 cut(s)	65, 137
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.