Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435325.1

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Forward (+)

864 .. 1448

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435325.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atgggaccagcggcccctccaatggcggcatctttggacttggacatgaatatctattcaaggcatttcccagacccaatgatgagttcatgtactgatcatcatatgatcaccatgagtagtttgccaccagagccttctcactttcctgagggaggtctgttgttagatgacgagaagacgcttgcaatgaagctcgctgcttcctccctcgaagaacttgttaagatgtgcactgctagtgagcctctttggatgaaaaacagtgagaatggaatggaaatgcttaatgctgaagaacgagctcgtatgttcccttggcctttgaacttcaagcagaacttaagtgatttaagaactgaagctactcgtgatactgctgtggtcataatgaatagcattaatcttgtggatgccttccttgatgctactaagtggatggaattgtttccttctattgtttctaaagcaaaaacagttcaagttatctcagcagatccttctggtcaggcaaaaggttcacttcagctggtaagggaagtacttaacatgtttatttacaatcaagaagcaataccttattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

194

Amino Acids

21.63

Weight (kDa)

4.78

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	11, 26
AclWI	GGATC	1 cut(s)	491
AcuI	CTGAAG	3 cut(s)	315, 381, 509
AfaI	GTAC	2 cut(s)	94, 543
AfiI	CCNNNNNNNGG	2 cut(s)	22, 155
AflII	CTTAAG	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	4 cut(s)	60, 328, 334, 482
AjuI	GAANNNNNNNTTGG	2 cut(s)	70, 102
AluBI	AGCT	4 cut(s)	196, 305, 365, 529
AluI	AGCT	4 cut(s)	196, 305, 365, 529
Alw21I	GWGCWC	2 cut(s)	236, 307
Alw44I	GTGCAC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	2 cut(s)	12, 320
ApaLI	GTGCAC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	200
AseI	ATTAAT	1 cut(s)	402
Asp700I	GAANNNNTTC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	5, 13
AsuHPI	GGTGA	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	150
BaeGI	GKGCMC	1 cut(s)	236
BaeI	ACNNNNGTAYC	2 cut(s)	366, 399
BanII	GRGCYC	1 cut(s)	307
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	236, 307
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	433
BclI	TGATCA	2 cut(s)	97, 108
BfaI	CTAG	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	343
BisI	GCNGC	3 cut(s)	12, 27, 201
BlsI	GCNGC	3 cut(s)	13, 28, 202
BmcAI	AGTACT	1 cut(s)	543
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 13
BmiI	GGNNCC	2 cut(s)	6, 15
BmsI	GCATC	3 cut(s)	38, 403, 415
BpiI	GAAGAC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 155
Bse21I	CCTNAGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	3 cut(s)	261, 418, 444
BseLI	CCNNNNNNNGG	2 cut(s)	22, 155
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	2 cut(s)	141, 504
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	1 cut(s)	187
BshFI	GGCC	2 cut(s)	14, 322
BsiHKAI	GWGCWC	2 cut(s)	236, 307
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	22, 155
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	2 cut(s)	14, 322
Bsp1286I	GDGCHC	2 cut(s)	236, 307
Bsp143I	GATC	3 cut(s)	97, 108, 496
BspACI	CCGC	2 cut(s)	11, 26
BspANI	GGCC	2 cut(s)	14, 322
BspCNI	CTCAG	2 cut(s)	142, 503
BspLI	GGNNCC	2 cut(s)	6, 15
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	3 cut(s)	97, 108, 496
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	369
Bst4CI	ACNGT	2 cut(s)	266, 478
BstAFI	CTTAAG	1 cut(s)	343
BstC8I	GCNNGC	2 cut(s)	186, 198
BstDEI	CTNAG	3 cut(s)	150, 432, 490
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	261, 418, 444
BstKTI	GATC	3 cut(s)	100, 111, 499
BstMBI	GATC	3 cut(s)	97, 108, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNSI	RCATGY	1 cut(s)	553
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
Bsu36I	CCTNAGG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	14, 322
BtsCI	GGATG	3 cut(s)	261, 418, 444
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	2 cut(s)	234, 271
Cac8I	GCNNGC	2 cut(s)	186, 198
Cfr13I	GGNCC	2 cut(s)	5, 13
CseI	GACGC	1 cut(s)	190
Csp6I	GTAC	2 cut(s)	93, 542
CviAII	CATG	4 cut(s)	46, 90, 115, 550
CviJI	RGCY	8 cut(s)	14, 136, 196, 247, 305, 322, 365, 529
CviKI_1	RGCY	8 cut(s)	14, 136, 196, 247, 305, 322, 365, 529
CviQI	GTAC	2 cut(s)	93, 542
DdeI	CTNAG	3 cut(s)	150, 432, 490
DpnI	GATC	3 cut(s)	99, 110, 498
DpnII	GATC	3 cut(s)	97, 108, 496
Ecl136II	GAGCTC	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	5
Eco53kI	GAGCTC	1 cut(s)	305
Eco57I	CTGAAG	3 cut(s)	315, 381, 509
Eco81I	CCTNAGG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	305
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	4 cut(s)	49, 93, 118, 553
FaiI	YATR	8 cut(s)	47, 91, 105, 107, 116, 311, 389, 551
FalI	AAGNNNNNCTT	4 cut(s)	326, 358, 507, 539
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	4 cut(s)	45, 89, 114, 549
FauNDI	CATATG	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	97, 108
Fnu4HI	GCNGC	3 cut(s)	12, 27, 201
FokI	GGATG	3 cut(s)	268, 425, 451
FriOI	GRGCYC	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	12, 27, 201
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	3 cut(s)	12, 27, 201
HaeIII	GGCC	2 cut(s)	14, 322
HgaI	GACGC	1 cut(s)	190
Hin1II	CATG	4 cut(s)	49, 93, 118, 553
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	234, 521
Hpy188III	TCNNGA	3 cut(s)	149, 371, 566
Hpy8I	GTNNAC	2 cut(s)	234, 521
HpyAV	CCTTC	4 cut(s)	147, 427, 462, 510
HpyCH4III	ACNGT	2 cut(s)	266, 478
HpyCH4V	TGCA	2 cut(s)	188, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	3 cut(s)	150, 432, 490
Hsp92II	CATG	4 cut(s)	49, 93, 118, 553
Ksp22I	TGATCA	2 cut(s)	97, 108
Kzo9I	GATC	3 cut(s)	97, 108, 496
LpnPI	CCDG	7 cut(s)	21, 84, 144, 162, 489, 494, 515
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	3 cut(s)	38, 403, 415
MaeI	CTAG	1 cut(s)	240
MalI	GATC	3 cut(s)	99, 110, 498
MboI	GATC	3 cut(s)	97, 108, 496
MboII	GAAGA	3 cut(s)	190, 227, 308
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	2 cut(s)	236, 307
MluCI	AATT	1 cut(s)	443
MnlI	CCTC	6 cut(s)	27, 145, 149, 217, 221, 258
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	7 cut(s)	225, 288, 344, 353, 402, 546, 583
MspA1I	CMGCKG	2 cut(s)	11, 529
MspCI	CTTAAG	1 cut(s)	343
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeI	CATATG	1 cut(s)	105
NdeII	GATC	3 cut(s)	97, 108, 496
NlaIII	CATG	4 cut(s)	49, 93, 118, 553
NlaIV	GGNNCC	2 cut(s)	6, 15
NspI	RCATGY	1 cut(s)	553
PciI	ACATGT	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	447
PkrI	GCNGC	3 cut(s)	13, 28, 202
PscI	ACATGT	1 cut(s)	549
PshBI	ATTAAT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	6, 15
PspPI	GGNCC	2 cut(s)	5, 13
PsrI	GAACNNNNNNTAC	2 cut(s)	349, 381
PsuI	RGATCY	1 cut(s)	496
PvuII	CAGCTG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	94, 543
RsaNI	GTAC	2 cut(s)	93, 542
SacI	GAGCTC	1 cut(s)	307
SaqAI	TTAA	7 cut(s)	225, 288, 344, 353, 402, 546, 583
SatI	GCNGC	3 cut(s)	12, 27, 201
Sau3AI	GATC	3 cut(s)	97, 108, 496
Sau96I	GGNCC	2 cut(s)	5, 13
ScaI	AGTACT	1 cut(s)	543
SduI	GDGCHC	2 cut(s)	236, 307
SetI	ASST	7 cut(s)	160, 198, 307, 367, 520, 531, 580
SfaNI	GCATC	3 cut(s)	38, 403, 415
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	343
SmoI	CTYRAG	1 cut(s)	343
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	2 cut(s)	11, 26
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	307
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	266, 478
TaqI	TCGA	1 cut(s)	213
TasI	AATT	1 cut(s)	443
TatI	WGTACW	2 cut(s)	92, 541
TauI	GCSGC	2 cut(s)	14, 29
Tru1I	TTAA	7 cut(s)	225, 288, 344, 353, 402, 546, 583
Tru9I	TTAA	7 cut(s)	225, 288, 344, 353, 402, 546, 583
TscAI	CASTG	2 cut(s)	241, 271
TseI	GCWGC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	62, 78, 206, 272, 407
TspRI	CASTG	2 cut(s)	241, 271
Vha464I	CTTAAG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	5
VspI	ATTAAT	1 cut(s)	402
XagI	CCTNNNNNAGG	1 cut(s)	153
XceI	RCATGY	1 cut(s)	553
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	240
ZrmI	AGTACT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.