Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0003040

Physical Location & Seq

Genomic Coordinates Reverse (-)

42700672 .. 42705642

Gene Structure 4971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2364 bp

ATGTATGGGGATTGCCAAGTAATGTCAACCATGGGAGGTGGGAACGTAGTCAACTCTGAAACCCTCTTTTCCTCGCCGATCCAAAACCCTAACTTCAACTTCATGCCTTTCCAGCCTTTCTCTTCCATCCTTCCGAAGGAAGAAACTGGGCTTATGACTAGAGGAAAGGAGGAGATGATGGAGAGTGGGTCTGGGAGTGAACATGCTGAAGAAAAGTACTCCGGCAACGAACAAGAGACCGAAGAACAACTGCAGCAACAGCCTCCCAAGAAGAAACGCTACCATCGCCATACCGCTCACCAGATCCAGGAAATGGAAAATTTATTTAAGGAGTGTCCACACCCAGATGACAAACAGAGGCAAAAGCTCAGCCTAGATCTGGGGCTGAAACCACGCCAGGTCAAGTTTTGGTTTCAAAATCGCCGAACCCAAATGAAGGCACAACAAGACCGGGCTGATAATGTCATGCTTAGAGCTGAAAATGATACCCTAAAAACTGAGAATTACAGGCTTCAAGCTGCACTGCGCAACATTATATGCCCTAACTGTGGAGGTGCGGCTATGATTGGGGACATTGCCTTGGATGAACACCAACTTCATCTCGAAAATGCTAGACTCCGAGAAGAGTTGGAACGAGTTTGTTGCCTCCCCGGATACCCTGGGGGCCGGCAAATTCAAACGATGGGACCAGCAGCCCCTCTAATGGCGGCATCTTTGGACTTGGACATGAATATCTATTCAAGGCATTTCCCAGACCCAATGATGAGTTCATGTACTGATCATCATATGATTCCCATGAGTAGTTTGCCACCAGAGCCTTCTCACTTCCCTGAGGGAGGTCTGTTGTTAGATGACGAGAAGACGCTTGCAATAAAGCTCGCTGCTTCCTCCCTCAAAGAACTTGTTAAGATGTGCACTGCTAGTGAGCCTCTTTGGATGAAAAACAATGAGAATGGAATGGAAATGCTTAATACTGAAGAACGAGCTCGTATGTTCCCTTGGCCTTTGAACTTCAAGCAGAACTTAAGTGATTTAAGAACTGAAGCTTCTCGTGATACTGCTGTGTGGATGGAATTGTTTTCTTCTATTGTTTCTAAAGCAAAAACAGTTCAAGTTATCTCAGCAGATCCTTCTGGTCAGGCAAATGGTTCACTTCAGCTGATGTATGCGGAATTGCAAGTTGTTTCTCCTCTGTTGCCAACTAGAGAAGCTCATTTTCTGCGCTATTGTCAACAAAATGAAGAGGAGGGAAGTTGGGCAATTGTCGATTTCCCAATTGATAGTTTCCATGGTAGCTTCCAACCTTCCTTTCCCCGGTACAAGAGATGGCCTTCCGGCTGTCTCATCCAAGATATGCCCAATGGATACTCAAGGGTTACCTGGGTGGAACATGCAGAGGTAGAGGAGAAACCTGTCCATCAAATATTCAGTCATTATGTCTACAGTGGGATGGCTTTTGGGGCGCATAGATGGTTGGCTGTTTTACAGAGGCAATGTGAAAGGGTTGCAAGCCTCATGGCCAGAAATATATCAGACCTCGGAGTGATACCTTCTCCTGAGGCGAGAAGGAATTTGATGAGACTAGCCCAGAGAATGATAAGAACATTCAGTGTGAACATGAGCACATCCGGTGGGCAGGCATGGACGGCTCTATCGGATTCCCCAGATGACACTATTCGAATAACCACAAGGAAAGTCTTAGAGGCTGGCCAACCCAATGGAGTCATTCTCAGTGCAGTTTCCACCACCTGGCTCCCTTATCCTCACTACCGTGTCTTTGAGCTCTTAAGGGACGAACGTCGCAGAGCTCAGCTTGATGTTCTTTCCAATGGAACTTCCTTGCAAGAAGTGGCTCACATTGCCAATGGCTCTCATCCTGGAAATTGCATTTCTGTTCTTCGCGTTAATGTAGCTAGCAACTCAACGCAGAACATAGAGCTGATGCTACAAGAGAGTTGCACCGATCAGTCAGGAAGCCTGGTTGTGTACGCAACCATGGACGTGAACGACATCCAATTGGCAATGAGCGGAGAGGATCCATCCTGCATTCCCATCCTTCCTCTAGGGTTTGCCATTGTCCCAGTTGAGTCCACTACCGAGAGTACTACTACAACATCCCCGTCTGCCCAAGACAGCCGCAACTCGGGTTGCCTTATGACGGTGGGACTCCAAGTTGTTGCCAGCCCAAACCCTTCTGCAAAGCTCAACCTCTCCACCGTCAGTGCCATTAACAACCACCTGTGCAACTCGGTCCAGCAGATCATCTCAGCTCTCGGCAACACCACCACAACTACTACTGATAATGGCAACACTGTTGGTGGTGGTGGCTCTTGCTCCGAGCTAACTGCTGCGAGCTCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0045595 GO:0045596 GO:0048367 GO:0048437 GO:0048497 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090700 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox START

Protein Analysis

788

Amino Acids

87.41

Weight (kDa)

5.62

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	91 - 146	3.4e-19	Homeodomain
START	PF01852	294 - 501	1.8e-35	START domain
PDF2_C	PF25797	518 - 758	1.7e-80	PDF2-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46880 AT5G46880 AT5G46880
fragaria_vesca	FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940 FvH4_5g22940
malus_domestica	MD06G1025900.v1.1 MD16G1280500.v1.1 MD16G1280600.v1.1
prunus_persica	Prupe.5G029000_v2.0.a1
pyrus_communis	pycom06g02110
rosa_chinensis	RchiOBHm_Chr7g0211691
rosa_laevigata	RLG00000002987
rosa_multiflora	Rmu_co8435325.1_g000001 Rmu_co8458813.1_g000001 Rmu_sc0003760.1_g000009 Rmu_sc0009130.1_g000001 Rmu_ssc0000166.1_g000001
rosa_roxburghii	Rroxscaffold_3G00247640
rosa_rugosa	Rorug07G0126700 Rorug07G0126800 Rorug07G0126900 Rorug07G0127000 Rorug07G0127100 Rorug07G0127200
rosa_samantha	Rh7AG259600 Rh7BG253600 Rh7CG276400 Rh7DG267000
rosa_wichuraiana	Rw7G022180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	527
AccB7I	CCANNNNNTGG	2 cut(s)	313, 1749
AccBSI	CCGCTC	2 cut(s)	296, 2028
AccI	GTMKAC	1 cut(s)	1440
AccII	CGCG	1 cut(s)	1902
AciI	CCGC	6 cut(s)	294, 557, 707, 1169, 2028, 2137
AclWI	GGATC	5 cut(s)	73, 298, 1121, 2030, 2043
AcoI	YGGCCR	2 cut(s)	1518, 1708
AcsI	RAATTY	3 cut(s)	319, 672, 1570
AcuI	CTGAAG	4 cut(s)	228, 996, 1062, 1139
AfaI	GTAC	5 cut(s)	218, 775, 1319, 1988, 2104
AflII	CTTAAG	2 cut(s)	1024, 1786
AgsI	TTSAA	8 cut(s)	97, 416, 515, 677, 741, 1009, 1015, 1112
AjiI	CACGTC	1 cut(s)	2002
AjnI	CCWGG	7 cut(s)	306, 396, 658, 1379, 1748, 1876, 1977
AjuI	GAANNNNNNNTTGG	4 cut(s)	751, 783, 1293, 1325
AleI	CACNNNNGTG	1 cut(s)	1770
Alw21I	GWGCWC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
Alw26I	GTCTC	3 cut(s)	230, 1346, 1573
Alw44I	GTGCAC	1 cut(s)	913
AlwI	GGATC	5 cut(s)	73, 298, 1121, 2030, 2043
Ama87I	CYCGRG	1 cut(s)	2143
AoxI	GGCC	5 cut(s)	664, 1001, 1328, 1518, 1708
ApaLI	GTGCAC	1 cut(s)	913
ApeKI	GCWGC	5 cut(s)	253, 518, 692, 881, 2348
ApoI	RAATTY	3 cut(s)	319, 672, 1570
ArsI	GACNNNNNNTTYG	2 cut(s)	1414, 1446
AspLEI	GCGC	3 cut(s)	528, 1224, 1465
AspS9I	GGNCC	3 cut(s)	664, 686, 2251
AsuC2I	CCSGG	3 cut(s)	452, 651, 1315
AsuHPI	GGTGA	1 cut(s)	290
AsuII	TTCGAA	1 cut(s)	1678
AsuNHI	GCTAGC	1 cut(s)	1913
AvaI	CYCGRG	1 cut(s)	2143
AvaII	GGWCC	2 cut(s)	686, 2251
AxyI	CCTNAGG	2 cut(s)	831, 1557
BaeGI	GKGCMC	1 cut(s)	917
BaeI	ACNNNNGTAYC	2 cut(s)	1047, 1080
BalI	TGGCCA	2 cut(s)	1520, 1710
BamHI	GGATCC	1 cut(s)	2035
BanII	GRGCYC	4 cut(s)	988, 1785, 1810, 2357
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	866
Bbv12I	GWGCWC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
BbvI	GCAGC	5 cut(s)	265, 505, 704, 868, 2335
BceAI	ACGGC	1 cut(s)	1662
BcgI	CGANNNNNNTGC	4 cut(s)	624, 658, 2327, 2361
BciT130I	CCWGG	7 cut(s)	308, 398, 660, 1381, 1750, 1878, 1979
BciVI	GTATCC	2 cut(s)	647, 1358
BclI	TGATCA	1 cut(s)	778
BcnI	CCSGG	3 cut(s)	452, 651, 1315
BcoDI	GTCTC	3 cut(s)	230, 1346, 1573
BfaI	CTAG	8 cut(s)	159, 374, 612, 921, 1203, 1583, 1914, 2063
BfmI	CTRYAG	2 cut(s)	251, 1441
BfrI	CTTAAG	2 cut(s)	1024, 1786
BfuI	GTATCC	2 cut(s)	647, 1358
BglII	AGATCT	1 cut(s)	376
BisI	GCNGC	8 cut(s)	254, 519, 558, 693, 708, 882, 2137, 2349
BlpI	GCTNAGC	2 cut(s)	368, 1809
BlsI	GCNGC	8 cut(s)	255, 520, 559, 694, 709, 883, 2138, 2350
BmcAI	AGTACT	2 cut(s)	218, 2104
Bme18I	GGWCC	2 cut(s)	686, 2251
BmeT110I	CYCGRG	1 cut(s)	2143
BmgBI	CACGTC	1 cut(s)	2002
BmgT120I	GGNCC	3 cut(s)	664, 686, 2251
BmiI	GGNNCC	4 cut(s)	665, 687, 1754, 2037
BmrI	ACTGGG	2 cut(s)	156, 2075
BmsI	GCATC	2 cut(s)	719, 1932
BmtI	GCTAGC	1 cut(s)	1917
BmuI	ACTGGG	2 cut(s)	156, 2075
BoxI	GACNNNNGTC	1 cut(s)	1797
BpiI	GAAGAC	1 cut(s)	866
BplI	GAGNNNNNCTC	2 cut(s)	1713, 1745
Bpu1102I	GCTNAGC	2 cut(s)	368, 1809
Bpu14I	TTCGAA	1 cut(s)	1678
BpuEI	CTTGAG	1 cut(s)	1354
BpuMI	CCSGG	3 cut(s)	452, 651, 1315
BsaI	GGTCTC	1 cut(s)	230
BsaWI	WCCGGW	1 cut(s)	1628
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bse118I	RCCGGY	1 cut(s)	666
Bse1I	ACTGG	2 cut(s)	151, 2081
Bse21I	CCTNAGG	2 cut(s)	831, 1557
Bse3DI	GCAATG	4 cut(s)	573, 1499, 1857, 2028
BseBI	CCWGG	7 cut(s)	308, 398, 660, 1381, 1750, 1878, 1979
BseMI	GCAATG	4 cut(s)	573, 1499, 1857, 2028
BseMII	CTCAG	8 cut(s)	382, 489, 822, 1134, 1548, 1744, 1823, 2280
BseNI	ACTGG	2 cut(s)	151, 2081
BseRI	GAGGAG	4 cut(s)	185, 1179, 1259, 1418
BseSI	GKGCMC	1 cut(s)	917
BseXI	GCAGC	5 cut(s)	265, 505, 704, 868, 2335
BsgI	GTGCAG	2 cut(s)	504, 1755
Bsh1236I	CGCG	1 cut(s)	1902
BshFI	GGCC	5 cut(s)	666, 1003, 1330, 1520, 1710
BsiHKAI	GWGCWC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
BsiHKCI	CYCGRG	1 cut(s)	2143
BsiSI	CCGG	7 cut(s)	222, 451, 651, 667, 1315, 1335, 1629
BslFI	GGGAC	5 cut(s)	584, 699, 1805, 2063, 2178
BsmAI	GTCTC	3 cut(s)	230, 1346, 1573
BsmFI	GGGAC	5 cut(s)	584, 699, 1805, 2063, 2178
BsmI	GAATGC	1 cut(s)	2046
BsnI	GGCC	5 cut(s)	666, 1003, 1330, 1520, 1710
Bso31I	GGTCTC	1 cut(s)	230
BsoBI	CYCGRG	1 cut(s)	2143
Bsp119I	TTCGAA	1 cut(s)	1678
Bsp1286I	GDGCHC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
Bsp143I	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
Bsp1720I	GCTNAGC	2 cut(s)	368, 1809
Bsp19I	CCATGG	3 cut(s)	30, 1288, 1995
BspACI	CCGC	6 cut(s)	294, 557, 707, 1169, 2028, 2137
BspANI	GGCC	5 cut(s)	666, 1003, 1330, 1520, 1710
BspCNI	CTCAG	8 cut(s)	381, 490, 823, 1133, 1549, 1743, 1822, 2279
BspFNI	CGCG	1 cut(s)	1902
BspLI	GGNNCC	4 cut(s)	665, 687, 1754, 2037
BspMAI	CTGCAG	1 cut(s)	255
BspOI	GCTAGC	1 cut(s)	1917
BspPI	GGATC	5 cut(s)	73, 298, 1121, 2030, 2043
BspT104I	TTCGAA	1 cut(s)	1678
BspTI	CTTAAG	2 cut(s)	1024, 1786
BspTNI	GGTCTC	1 cut(s)	230
BsrBI	CCGCTC	2 cut(s)	296, 2028
BsrDI	GCAATG	4 cut(s)	573, 1499, 1857, 2028
BsrFI	RCCGGY	1 cut(s)	666
BsrI	ACTGG	2 cut(s)	151, 2081
BssAI	RCCGGY	1 cut(s)	666
BssMI	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	5 cut(s)	30, 579, 998, 1288, 1995
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	7 cut(s)	308, 398, 660, 1381, 1750, 1878, 1979
Bst4CI	ACNGT	7 cut(s)	548, 1108, 1445, 1772, 2161, 2218, 2314
Bst6I	CTCTTC	3 cut(s)	127, 618, 1236
BstAFI	CTTAAG	2 cut(s)	1024, 1786
BstBI	TTCGAA	1 cut(s)	1678
BstC8I	GCNNGC	9 cut(s)	668, 867, 879, 1510, 1638, 1708, 1915, 2182, 2353
BstDSI	CCRYGG	3 cut(s)	30, 1288, 1995
BstEII	GGTNACC	1 cut(s)	1375
BstENI	CCTNNNNNAGG	2 cut(s)	134, 834
BstFNI	CGCG	1 cut(s)	1902
BstHHI	GCGC	3 cut(s)	528, 1224, 1465
BstKTI	GATC	8 cut(s)	81, 306, 379, 781, 1129, 1966, 2038, 2262
BstMAI	GTCTC	3 cut(s)	230, 1346, 1573
BstMBI	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
BstMWI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1460, 1646, 1859
BstNI	CCWGG	7 cut(s)	308, 398, 660, 1381, 1750, 1878, 1979
BstNSI	RCATGY	2 cut(s)	206, 1394
BstPAI	GACNNNNGTC	1 cut(s)	1797
BstPI	GGTNACC	1 cut(s)	1375
BstSFI	CTRYAG	2 cut(s)	251, 1441
BstSLI	GKGCMC	1 cut(s)	917
BstUI	CGCG	1 cut(s)	1902
BstV1I	GCAGC	5 cut(s)	265, 505, 704, 868, 2335
BstV2I	GAAGAC	1 cut(s)	866
BstX2I	RGATCY	4 cut(s)	303, 376, 1126, 2035
BstXI	CCANNNNNNTGG	1 cut(s)	1718
BstYI	RGATCY	4 cut(s)	303, 376, 1126, 2035
Bsu36I	CCTNAGG	2 cut(s)	831, 1557
BsuI	GTATCC	2 cut(s)	647, 1358
BsuRI	GGCC	5 cut(s)	666, 1003, 1330, 1520, 1710
BtgI	CCRYGG	3 cut(s)	30, 1288, 1995
BtgZI	GCGATG	1 cut(s)	269
BtrI	CACGTC	1 cut(s)	2002
BtsI	GCAGTG	2 cut(s)	521, 915
BtsIMutI	CAGTG	7 cut(s)	521, 915, 1450, 1615, 1738, 2227, 2310
Cac8I	GCNNGC	9 cut(s)	668, 867, 879, 1510, 1638, 1708, 1915, 2182, 2353
CfoI	GCGC	3 cut(s)	528, 1224, 1465
Cfr10I	RCCGGY	1 cut(s)	666
Cfr13I	GGNCC	3 cut(s)	664, 686, 2251
CseI	GACGC	1 cut(s)	871
Csp6I	GTAC	5 cut(s)	217, 774, 1318, 1987, 2103
CviQI	GTAC	5 cut(s)	217, 774, 1318, 1987, 2103
DpnI	GATC	8 cut(s)	80, 305, 378, 780, 1128, 1965, 2037, 2261
DpnII	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
EaeI	YGGCCR	2 cut(s)	1518, 1708
Eam1104I	CTCTTC	3 cut(s)	127, 618, 1236
EarI	CTCTTC	3 cut(s)	127, 618, 1236
Ecl136II	GAGCTC	4 cut(s)	986, 1783, 1808, 2355
Eco130I	CCWWGG	5 cut(s)	30, 579, 998, 1288, 1995
Eco24I	GRGCYC	4 cut(s)	988, 1785, 1810, 2357
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	2 cut(s)	686, 2251
Eco53kI	GAGCTC	4 cut(s)	986, 1783, 1808, 2355
Eco57I	CTGAAG	4 cut(s)	228, 996, 1062, 1139
Eco81I	CCTNAGG	2 cut(s)	831, 1557
Eco88I	CYCGRG	1 cut(s)	2143
Eco91I	GGTNACC	1 cut(s)	1375
EcoICRI	GAGCTC	4 cut(s)	986, 1783, 1808, 2355
EcoNI	CCTNNNNNAGG	2 cut(s)	134, 834
EcoO65I	GGTNACC	1 cut(s)	1375
EcoRII	CCWGG	7 cut(s)	306, 396, 658, 1379, 1748, 1876, 1977
EcoT14I	CCWWGG	5 cut(s)	30, 579, 998, 1288, 1995
EcoT38I	GRGCYC	4 cut(s)	988, 1785, 1810, 2357
ErhI	CCWWGG	5 cut(s)	30, 579, 998, 1288, 1995
FalI	AAGNNNNNCTT	2 cut(s)	1007, 1039
FaqI	GGGAC	5 cut(s)	584, 699, 1805, 2063, 2178
FauNDI	CATATG	1 cut(s)	786
FbaI	TGATCA	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	1440
Fnu4HI	GCNGC	8 cut(s)	254, 519, 558, 693, 708, 882, 2137, 2349
FriOI	GRGCYC	4 cut(s)	988, 1785, 1810, 2357
Fsp4HI	GCNGC	8 cut(s)	254, 519, 558, 693, 708, 882, 2137, 2349
FspBI	CTAG	8 cut(s)	159, 374, 612, 921, 1203, 1583, 1914, 2063
FspI	TGCGCA	1 cut(s)	527
GlaI	GCGC	3 cut(s)	527, 1223, 1464
GluI	GCNGC	8 cut(s)	254, 519, 558, 693, 708, 882, 2137, 2349
HaeIII	GGCC	5 cut(s)	666, 1003, 1330, 1520, 1710
HapII	CCGG	7 cut(s)	222, 451, 651, 667, 1315, 1335, 1629
HgaI	GACGC	1 cut(s)	871
HhaI	GCGC	3 cut(s)	528, 1224, 1465
Hin6I	GCGC	3 cut(s)	526, 1222, 1463
HinP1I	GCGC	3 cut(s)	526, 1222, 1463
HincII	GTYRAC	3 cut(s)	27, 52, 1232
HindII	GTYRAC	3 cut(s)	27, 52, 1232
HindIII	AAGCTT	1 cut(s)	1044
HinfI	GANTC	6 cut(s)	615, 790, 1658, 1722, 2087, 2166
HpaII	CCGG	7 cut(s)	222, 451, 651, 667, 1315, 1335, 1629
HphI	GGTGA	1 cut(s)	290
Hpy188I	TCNGA	7 cut(s)	58, 135, 620, 1534, 1541, 1657, 2338
Hpy188III	TCNNGA	4 cut(s)	602, 1052, 1556, 1971
Hpy99I	CGWCG	1 cut(s)	1803
HpyCH4III	ACNGT	7 cut(s)	548, 1108, 1445, 1772, 2161, 2218, 2314
HpyCH4IV	ACGT	3 cut(s)	45, 1798, 2001
HpyF10VI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1460, 1646, 1859
HpySE526I	ACGT	3 cut(s)	45, 1798, 2001
HspAI	GCGC	3 cut(s)	526, 1222, 1463
KroI	GCCGGC	1 cut(s)	666
KroNI	GCCGGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
LmnI	GCTCC	3 cut(s)	1758, 2339, 2360
Lsp1109I	GCAGC	5 cut(s)	265, 505, 704, 868, 2335
LweI	GCATC	2 cut(s)	719, 1932
MaeI	CTAG	8 cut(s)	159, 374, 612, 921, 1203, 1583, 1914, 2063
MaeII	ACGT	3 cut(s)	45, 1798, 2001
MaeIII	GTNAC	1 cut(s)	1375
MalI	GATC	8 cut(s)	80, 305, 378, 780, 1128, 1965, 2037, 2261
MbiI	CCGCTC	2 cut(s)	296, 2028
MboI	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
MfeI	CAATTG	3 cut(s)	1260, 1275, 2015
MflI	RGATCY	4 cut(s)	303, 376, 1126, 2035
MhlI	GDGCHC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
MlsI	TGGCCA	2 cut(s)	1520, 1710
MluNI	TGGCCA	2 cut(s)	1520, 1710
MlyI	GAGTC	4 cut(s)	609, 1731, 2096, 2160
MmeI	TCCRAC	2 cut(s)	609, 1324
Mox20I	TGGCCA	2 cut(s)	1520, 1710
MroNI	GCCGGC	1 cut(s)	666
MscI	TGGCCA	2 cut(s)	1520, 1710
MseI	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1787, 1905, 2229
MslI	CAYNNNNRTG	3 cut(s)	345, 1770, 2000
Msp20I	TGGCCA	2 cut(s)	1520, 1710
MspA1I	CMGCKG	1 cut(s)	1159
MspCI	CTTAAG	2 cut(s)	1024, 1786
MspI	CCGG	7 cut(s)	222, 451, 651, 667, 1315, 1335, 1629
MunI	CAATTG	3 cut(s)	1260, 1275, 2015
Mva1269I	GAATGC	1 cut(s)	2046
MvaI	CCWGG	7 cut(s)	308, 398, 660, 1381, 1750, 1878, 1979
MvnI	CGCG	1 cut(s)	1902
MwoI	GCNNNNNNNGC	7 cut(s)	112, 259, 285, 814, 1460, 1646, 1859
NaeI	GCCGGC	1 cut(s)	668
NciI	CCSGG	3 cut(s)	452, 651, 1315
NcoI	CCATGG	3 cut(s)	30, 1288, 1995
NdeI	CATATG	1 cut(s)	786
NdeII	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
NgoMIV	GCCGGC	1 cut(s)	666
NheI	GCTAGC	1 cut(s)	1913
NlaIV	GGNNCC	4 cut(s)	665, 687, 1754, 2037
NmeAIII	GCCGAG	1 cut(s)	2253
NsbI	TGCGCA	1 cut(s)	527
NspI	RCATGY	2 cut(s)	206, 1394
NspV	TTCGAA	1 cut(s)	1678
OliI	CACNNNNGTG	1 cut(s)	1770
PasI	CCCWGGG	1 cut(s)	659
PctI	GAATGC	1 cut(s)	2046
PdiI	GCCGGC	1 cut(s)	668
PfeI	GAWTC	2 cut(s)	790, 1658
PflMI	CCANNNNNTGG	2 cut(s)	313, 1749
PfoI	TCCNGGA	2 cut(s)	306, 1876
PkrI	GCNGC	8 cut(s)	255, 520, 559, 694, 709, 883, 2138, 2350
PleI	GAGTC	4 cut(s)	609, 1730, 2095, 2160
PpsI	GAGTC	4 cut(s)	609, 1730, 2095, 2160
PshAI	GACNNNNGTC	1 cut(s)	1797
Psp124BI	GAGCTC	4 cut(s)	988, 1785, 1810, 2357
Psp6I	CCWGG	7 cut(s)	306, 396, 658, 1379, 1748, 1876, 1977
PspEI	GGTNACC	1 cut(s)	1375
PspGI	CCWGG	7 cut(s)	306, 396, 658, 1379, 1748, 1876, 1977
PspN4I	GGNNCC	4 cut(s)	665, 687, 1754, 2037
PspPI	GGNCC	3 cut(s)	664, 686, 2251
PstI	CTGCAG	1 cut(s)	255
PsuI	RGATCY	4 cut(s)	303, 376, 1126, 2035
PvuII	CAGCTG	1 cut(s)	1159
RsaI	GTAC	5 cut(s)	218, 775, 1319, 1988, 2104
RsaNI	GTAC	5 cut(s)	217, 774, 1318, 1987, 2103
RseI	CAYNNNNRTG	3 cut(s)	345, 1770, 2000
SacI	GAGCTC	4 cut(s)	988, 1785, 1810, 2357
SaqAI	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1787, 1905, 2229
SatI	GCNGC	8 cut(s)	254, 519, 558, 693, 708, 882, 2137, 2349
Sau3AI	GATC	8 cut(s)	78, 303, 376, 778, 1126, 1963, 2035, 2259
Sau96I	GGNCC	3 cut(s)	664, 686, 2251
ScaI	AGTACT	2 cut(s)	218, 2104
SchI	GAGTC	4 cut(s)	609, 1731, 2096, 2160
SduI	GDGCHC	6 cut(s)	917, 988, 1625, 1785, 1810, 2357
SfaNI	GCATC	2 cut(s)	719, 1932
SfcI	CTRYAG	2 cut(s)	251, 1441
SfuI	TTCGAA	1 cut(s)	1678
SinI	GGWCC	2 cut(s)	686, 2251
SmiMI	CAYNNNNRTG	3 cut(s)	345, 1770, 2000
SmlI	CTYRAG	3 cut(s)	1024, 1369, 1786
SmoI	CTYRAG	3 cut(s)	1024, 1369, 1786
SsiI	CCGC	6 cut(s)	294, 557, 707, 1169, 2028, 2137
SspI	AATATT	1 cut(s)	1425
SspMI	CTAG	8 cut(s)	159, 374, 612, 921, 1203, 1583, 1914, 2063
SstI	GAGCTC	4 cut(s)	988, 1785, 1810, 2357
StyI	CCWWGG	5 cut(s)	30, 579, 998, 1288, 1995
TaaI	ACNGT	7 cut(s)	548, 1108, 1445, 1772, 2161, 2218, 2314
TaiI	ACGT	3 cut(s)	48, 1801, 2004
TaqI	TCGA	3 cut(s)	603, 1266, 1678
TaqII	GACCGA	2 cut(s)	254, 2239
TatI	WGTACW	3 cut(s)	216, 773, 2102
TauI	GCSGC	3 cut(s)	560, 710, 2139
TfiI	GAWTC	2 cut(s)	790, 1658
Tru1I	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1787, 1905, 2229
Tru9I	TTAA	8 cut(s)	327, 906, 969, 1025, 1034, 1787, 1905, 2229
TscAI	CASTG	7 cut(s)	528, 922, 1450, 1615, 1738, 2227, 2317
TseI	GCWGC	5 cut(s)	253, 518, 692, 881, 2348
TspDTI	ATGAA	8 cut(s)	91, 449, 587, 600, 743, 759, 953, 1254
TspRI	CASTG	7 cut(s)	528, 922, 1450, 1615, 1738, 2227, 2317
Van91I	CCANNNNNTGG	2 cut(s)	313, 1749
Vha464I	CTTAAG	2 cut(s)	1024, 1786
VneI	GTGCAC	1 cut(s)	913
VpaK11BI	GGWCC	2 cut(s)	686, 2251
XagI	CCTNNNNNAGG	2 cut(s)	134, 834
XapI	RAATTY	3 cut(s)	319, 672, 1570
XceI	RCATGY	2 cut(s)	206, 1394
XmiI	GTMKAC	1 cut(s)	1440
XspI	CTAG	8 cut(s)	159, 374, 612, 921, 1203, 1583, 1914, 2063
ZrmI	AGTACT	2 cut(s)	218, 2104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.