Rroxscaffold_3G00247580

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008138
Physical Location & Seq
Forward (+)
40905986 .. 40907377
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247580.1

Sequence Viewer

Length: 1392 bp
ATGCTTGACAAACAAAGTGACGCAATGAACAGAATCTCACCAAAAGGACATGTTGCCATTCTTGCATTTCCGTTTGGATGCCATGCAAAGCCTGTGCTTAACTTGGTGTGCAAGCTCGCGAAAGCTACCCCAAACACGCGCTTTTCTTTCTTCAACACATCGAAATCCAACGACTGGCTGTTCTCGGAATCAAAATCCGAGATTTTGGATAACATAATACCCTACAATGTATCAGATGGTGTTCCAACAAATCATGTCTTAACAGGAAACCCGCTAGAGGCAGTGGACCTTTTCCTTAAGGCGGCGCCTGAAAACTTCAAAACCTGCATTGAAAAGGCAATGGCAGACACAAGCACGCAGATTAGTTGTTTAATAACAGATGGATTCTTGGTCTTTGGTAGCCAGATGGCTGAGAATTTGGGTGTTCCATGGATTCCAATTTGGATACCCTTACCGTGCACCCTGTCTGCTCATATTTACACAGACGTTATCCGCCATATATATGCAAATGATGGTGTTGATGGTCAAGACAAAACCCTAGAAGTCATTCCGGGTTTGTCTACAATGTGCATCGAGGACTTACCAGAAGAAGTACTTCCGAGTGAATCTCTATTCTCGCACACCTTAAGTCGAATTGGGCAAGTACTACCACAGTCTACAGCCGTTGTCATGAATTTCTATCAAGAACTAAACCCCGCGCTCCTTGAAAACGATCTCAAATCCAAGTTTCCCAAACTGCTCAATGTAGGTTTTCTCACCCTTTCGTTACCACTACCGCCATTGCCACCATCAGAATCCGATGCCACAGGCTGCCTTTCGTGGTTGGACGAGCAACGAGCTTCGTCTGTGGTCTATATCAGTTTCGGAACTGTGGGAGCTCCATCTAGGAGTGAGCTTGTAGCTCTGTCTGAGGCACTGGAAGCAATTGATGCACCATTTCTTTGGTCTCTTGGAGACAATTTTAAGGACTTATTGCCGTCTGGTTTCGTTGAAAGGACAAACAAGCATGGGAAAGTTGTGTCTTGGGCACCTCAGACGCAAGTATTAGGACATAGCTCAACAGGTGTGTTTGTGACACACTGCGGGTGCAATTCTGTGTATGAAAGCATTTCAAATGGGGTCCCAATGATCTGCAGGCCATTGTTTGGAGATCACAGAATGACTGCGCGGATGGTTGAGGAAGTGTGGGGTGTTGGAATAAAAGTGGAGGGTGAAGTATTCACAAAGAGTAGAGCGATCAAGAGCTTCGAGCGGATTTTGGAAAATGAAGAAGGGAAGAAGAAGAGGGAGAAGGCCAGAGTCCTCAAAGAAATTATAGGAGAGGCTGCTGGGCATTCTGGGAGGGCTCAACAAGACTTTAAAACTTTGATGGATGTAATTTCTATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

463

Amino Acids

50.86

Weight (kDa)

5.46

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 123 - 427 4.9e-33 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AccB1I GGYRCC 2 cut(s) 304, 1027
AccB7I CCANNNNNTGG 2 cut(s) 174, 1145
AccBSI CCGCTC 1 cut(s) 1252
AccI GTMKAC 2 cut(s) 560, 656
AccII CGCG 4 cut(s) 119, 139, 698, 1168
AciI CCGC 8 cut(s) 272, 302, 493, 696, 776, 1083, 1168, 1252
AcsI RAATTY 2 cut(s) 415, 673
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 2 cut(s) 594, 645
AfiI CCNNNNNNNGG 4 cut(s) 174, 277, 301, 1145
AflII CTTAAG 2 cut(s) 296, 625
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 6 cut(s) 154, 319, 332, 707, 992, 1113
AluBI AGCT 8 cut(s) 115, 125, 839, 878, 895, 902, 1056, 1245
AluI AGCT 8 cut(s) 115, 125, 839, 878, 895, 902, 1056, 1245
Alw21I GWGCWC 2 cut(s) 461, 880
Alw26I GTCTC 2 cut(s) 948, 951
Alw44I GTGCAC 1 cut(s) 457
AoxI GGCC 2 cut(s) 1136, 1293
ApaLI GTGCAC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 810, 1325
ApoI RAATTY 2 cut(s) 415, 673
Asp700I GAANNNNTTC 2 cut(s) 546, 594
AspLEI GCGC 4 cut(s) 141, 307, 700, 1168
AspS9I GGNCC 2 cut(s) 286, 1120
AsuC2I CCSGG 1 cut(s) 552
AsuHPI GGTGA 3 cut(s) 30, 748, 1223
AvaII GGWCC 2 cut(s) 286, 1120
BaeGI GKGCMC 2 cut(s) 461, 1030
BanI GGYRCC 2 cut(s) 304, 1027
BanII GRGCYC 2 cut(s) 880, 1348
Bbv12I GWGCWC 2 cut(s) 461, 880
BbvI GCAGC 2 cut(s) 797, 1312
BccI CCATC 9 cut(s) 230, 374, 400, 506, 515, 796, 889, 1165, 1363
BceAI ACGGC 2 cut(s) 647, 961
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 552
BcoDI GTCTC 2 cut(s) 948, 951
BfaI CTAG 3 cut(s) 275, 539, 885
BfmI CTRYAG 2 cut(s) 657, 1132
BfoI RGCGCY 1 cut(s) 308
BfrI CTTAAG 2 cut(s) 296, 625
BfuAI ACCTGC 1 cut(s) 332
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 3 cut(s) 303, 811, 1326
BlsI GCNGC 3 cut(s) 304, 812, 1327
BmcAI AGTACT 2 cut(s) 594, 645
Bme1390I CCNGG 1 cut(s) 552
Bme18I GGWCC 2 cut(s) 286, 1120
BmgT120I GGNCC 2 cut(s) 286, 1120
BmiI GGNNCC 4 cut(s) 306, 1029, 1121, 1122
BmrFI CCNGG 1 cut(s) 552
BmsI GCATC 4 cut(s) 68, 579, 790, 919
BplI GAGNNNNNCTC 2 cut(s) 592, 624
BpuMI CCSGG 1 cut(s) 552
BsaHI GRCGYC 1 cut(s) 305
BsaI GGTCTC 1 cut(s) 951
BsaJI CCNNGG 1 cut(s) 428
Bsc4I CCNNNNNNNGG 4 cut(s) 174, 277, 301, 1145
Bse1I ACTGG 2 cut(s) 179, 921
Bse3DI GCAATG 3 cut(s) 30, 345, 779
BseDI CCNNGG 1 cut(s) 428
BseGI GGATG 3 cut(s) 83, 1176, 1378
BseLI CCNNNNNNNGG 4 cut(s) 174, 277, 301, 1145
BseMI GCAATG 3 cut(s) 30, 345, 779
BseMII CTCAG 3 cut(s) 402, 900, 1046
BseNI ACTGG 2 cut(s) 179, 921
BseSI GKGCMC 2 cut(s) 461, 1030
BseXI GCAGC 2 cut(s) 797, 1312
BseYI CCCAGC 1 cut(s) 1328
Bsh1236I CGCG 4 cut(s) 119, 139, 698, 1168
BshFI GGCC 2 cut(s) 1138, 1295
BshNI GGYRCC 2 cut(s) 304, 1027
BsiHKAI GWGCWC 2 cut(s) 461, 880
BsiSI CCGG 1 cut(s) 551
BslFI GGGAC 1 cut(s) 1106
BslI CCNNNNNNNGG 4 cut(s) 174, 277, 301, 1145
BsmAI GTCTC 2 cut(s) 948, 951
BsmFI GGGAC 1 cut(s) 1106
BsmI GAATGC 1 cut(s) 1333
BsnI GGCC 2 cut(s) 1138, 1295
Bso31I GGTCTC 1 cut(s) 951
Bsp1286I GDGCHC 4 cut(s) 461, 880, 1030, 1348
Bsp143I GATC 4 cut(s) 712, 1128, 1150, 1236
Bsp19I CCATGG 1 cut(s) 428
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 8 cut(s) 272, 302, 493, 696, 776, 1083, 1168, 1252
BspANI GGCC 2 cut(s) 1138, 1295
BspCNI CTCAG 3 cut(s) 403, 901, 1045
BspFNI CGCG 4 cut(s) 119, 139, 698, 1168
BspHI TCATGA 1 cut(s) 669
BspLI GGNNCC 4 cut(s) 306, 1029, 1121, 1122
BspMAI CTGCAG 1 cut(s) 1136
BspMI ACCTGC 1 cut(s) 332
BspT107I GGYRCC 2 cut(s) 304, 1027
BspTI CTTAAG 2 cut(s) 296, 625
BspTNI GGTCTC 1 cut(s) 951
BsrBI CCGCTC 1 cut(s) 1252
BsrDI GCAATG 3 cut(s) 30, 345, 779
BsrI ACTGG 2 cut(s) 179, 921
BssECI CCNNGG 1 cut(s) 428
BssMI GATC 4 cut(s) 712, 1128, 1150, 1236
BssNI GRCGYC 1 cut(s) 305
BssT1I CCWWGG 1 cut(s) 428
Bst4CI ACNGT 3 cut(s) 456, 654, 871
Bst6I CTCTTC 1 cut(s) 1277
BstACI GRCGYC 1 cut(s) 305
BstAFI CTTAAG 2 cut(s) 296, 625
BstAPI GCANNNNNTGC 1 cut(s) 929
BstC8I GCNNGC 4 cut(s) 113, 117, 356, 1136
BstDEI CTNAG 3 cut(s) 411, 909, 1032
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 3 cut(s) 83, 1176, 1378
BstFNI CGCG 4 cut(s) 119, 139, 698, 1168
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 141, 307, 700, 1168
BstKTI GATC 4 cut(s) 715, 1131, 1153, 1239
BstMAI GTCTC 2 cut(s) 948, 951
BstMBI GATC 4 cut(s) 712, 1128, 1150, 1236
BstMWI GCNNNNNNNGC 3 cut(s) 62, 920, 929
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 550
BstSFI CTRYAG 2 cut(s) 657, 1132
BstSLI GKGCMC 2 cut(s) 461, 1030
BstUI CGCG 4 cut(s) 119, 139, 698, 1168
BstV1I GCAGC 2 cut(s) 797, 1312
BstXI CCANNNNNNTGG 1 cut(s) 942
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 1138, 1295
BtgI CCRYGG 1 cut(s) 428
BtsCI GGATG 3 cut(s) 83, 1176, 1378
BtsI GCAGTG 2 cut(s) 288, 1078
BtsIMutI CAGTG 3 cut(s) 288, 914, 1078
BtuMI TCGCGA 1 cut(s) 119
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 4 cut(s) 113, 117, 356, 1136
CciI TCATGA 1 cut(s) 669
CfoI GCGC 4 cut(s) 141, 307, 700, 1168
Cfr13I GGNCC 2 cut(s) 286, 1120
CseI GACGC 2 cut(s) 29, 1045
Csp6I GTAC 2 cut(s) 593, 644
CviAII CATG 6 cut(s) 50, 83, 254, 429, 670, 1007
CviQI GTAC 2 cut(s) 593, 644
DdeI CTNAG 3 cut(s) 411, 909, 1032
DinI GGCGCC 1 cut(s) 306
DpnI GATC 4 cut(s) 714, 1130, 1152, 1238
DpnII GATC 4 cut(s) 712, 1128, 1150, 1236
DraI TTTAAA 1 cut(s) 1360
Eam1104I CTCTTC 1 cut(s) 1277
EarI CTCTTC 1 cut(s) 1277
EciI GGCGGA 1 cut(s) 482
Ecl136II GAGCTC 1 cut(s) 878
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 2 cut(s) 880, 1348
Eco31I GGTCTC 1 cut(s) 951
Eco47I GGWCC 2 cut(s) 286, 1120
Eco53kI GAGCTC 1 cut(s) 878
EcoICRI GAGCTC 1 cut(s) 878
EcoO109I RGGNCCY 1 cut(s) 1120
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 2 cut(s) 880, 1348
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 6 cut(s) 53, 86, 257, 432, 673, 1010
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 1106
FatI CATG 6 cut(s) 49, 82, 253, 428, 669, 1006
FauI CCCGC 3 cut(s) 279, 703, 1076
FblI GTMKAC 2 cut(s) 560, 656
Fnu4HI GCNGC 3 cut(s) 303, 811, 1326
FokI GGATG 3 cut(s) 90, 1183, 1385
FriOI GRGCYC 2 cut(s) 880, 1348
Fsp4HI GCNGC 3 cut(s) 303, 811, 1326
FspBI CTAG 3 cut(s) 275, 539, 885
GlaI GCGC 4 cut(s) 140, 306, 699, 1167
GluI GCNGC 3 cut(s) 303, 811, 1326
GsaI CCCAGC 1 cut(s) 1332
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 2 cut(s) 1138, 1295
HapII CCGG 1 cut(s) 551
HgaI GACGC 2 cut(s) 29, 1045
HhaI GCGC 4 cut(s) 141, 307, 700, 1168
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 6 cut(s) 53, 86, 257, 432, 673, 1010
Hin6I GCGC 4 cut(s) 139, 305, 698, 1166
HinP1I GCGC 4 cut(s) 139, 305, 698, 1166
HinfI GANTC 7 cut(s) 33, 188, 384, 433, 605, 794, 1299
HpaII CCGG 1 cut(s) 551
HphI GGTGA 3 cut(s) 30, 748, 1223
Hpy166II GTNNAC 4 cut(s) 286, 459, 561, 657
Hpy188I TCNGA 9 cut(s) 187, 199, 235, 600, 793, 799, 866, 910, 1035
Hpy188III TCNNGA 5 cut(s) 118, 527, 670, 683, 1240
Hpy8I GTNNAC 4 cut(s) 286, 459, 561, 657
HpyAV CCTTC 2 cut(s) 1265, 1285
HpyCH4III ACNGT 3 cut(s) 456, 654, 871
HpyCH4IV ACGT 1 cut(s) 486
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 920, 929
HpyF3I CTNAG 3 cut(s) 411, 909, 1032
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 6 cut(s) 53, 86, 257, 432, 673, 1010
HspAI GCGC 4 cut(s) 139, 305, 698, 1166
KasI GGCGCC 1 cut(s) 304
KflI GGGWCCC 1 cut(s) 1120
Kzo9I GATC 4 cut(s) 712, 1128, 1150, 1236
LmnI GCTCC 3 cut(s) 705, 875, 883
Lsp1109I GCAGC 2 cut(s) 797, 1312
LweI GCATC 4 cut(s) 68, 579, 790, 919
MaeI CTAG 3 cut(s) 275, 539, 885
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 3 cut(s) 17, 765, 1072
MalI GATC 4 cut(s) 714, 1130, 1152, 1238
MbiI CCGCTC 1 cut(s) 1252
MboI GATC 4 cut(s) 712, 1128, 1150, 1236
MboII GAAGA 6 cut(s) 142, 599, 1280, 1288, 1291, 1294
MfeI CAATTG 1 cut(s) 924
MhlI GDGCHC 4 cut(s) 461, 880, 1030, 1348
MluCI AATT 9 cut(s) 415, 438, 633, 673, 924, 958, 1090, 1311, 1377
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 1 cut(s) 1308
MmeI TCCRAC 4 cut(s) 192, 269, 804, 1174
MroXI GAANNNNTTC 2 cut(s) 546, 594
MseI TTAA 8 cut(s) 99, 260, 297, 371, 626, 963, 1359, 1390
MslI CAYNNNNRTG 1 cut(s) 501
MspCI CTTAAG 2 cut(s) 296, 625
MspI CCGG 1 cut(s) 551
MspR9I CCNGG 1 cut(s) 552
MunI CAATTG 1 cut(s) 924
Mva1269I GAATGC 1 cut(s) 1333
MvnI CGCG 4 cut(s) 119, 139, 698, 1168
MwoI GCNNNNNNNGC 3 cut(s) 62, 920, 929
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 552
NcoI CCATGG 1 cut(s) 428
NdeII GATC 4 cut(s) 712, 1128, 1150, 1236
NlaIII CATG 6 cut(s) 53, 86, 257, 432, 673, 1010
NlaIV GGNNCC 4 cut(s) 306, 1029, 1121, 1122
NmuCI GTSAC 2 cut(s) 17, 1072
NruI TCGCGA 1 cut(s) 119
NspI RCATGY 1 cut(s) 53
PagI TCATGA 1 cut(s) 669
PciI ACATGT 1 cut(s) 49
PctI GAATGC 1 cut(s) 1333
PdmI GAANNNNTTC 2 cut(s) 546, 594
PfeI GAWTC 6 cut(s) 33, 188, 384, 433, 605, 794
PflMI CCANNNNNTGG 2 cut(s) 174, 1145
PkrI GCNGC 3 cut(s) 304, 812, 1327
PleI GAGTC 1 cut(s) 1307
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 1307
PpuMI RGGWCCY 1 cut(s) 1120
PscI ACATGT 1 cut(s) 49
Psp124BI GAGCTC 1 cut(s) 880
Psp5II RGGWCCY 1 cut(s) 1120
PspFI CCCAGC 1 cut(s) 1328
PspN4I GGNNCC 4 cut(s) 306, 1029, 1121, 1122
PspPI GGNCC 2 cut(s) 286, 1120
PspPPI RGGWCCY 1 cut(s) 1120
PstI CTGCAG 1 cut(s) 1136
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 2 cut(s) 594, 645
RsaNI GTAC 2 cut(s) 593, 644
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 1 cut(s) 880
SaqAI TTAA 8 cut(s) 99, 260, 297, 371, 626, 963, 1359, 1390
SatI GCNGC 3 cut(s) 303, 811, 1326
Sau3AI GATC 4 cut(s) 712, 1128, 1150, 1236
Sau96I GGNCC 2 cut(s) 286, 1120
ScaI AGTACT 2 cut(s) 594, 645
SchI GAGTC 1 cut(s) 1308
ScrFI CCNGG 1 cut(s) 552
SduI GDGCHC 4 cut(s) 461, 880, 1030, 1348
SfaNI GCATC 4 cut(s) 68, 579, 790, 919
SfcI CTRYAG 2 cut(s) 657, 1132
SfoI GGCGCC 1 cut(s) 306
SinI GGWCC 2 cut(s) 286, 1120
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 2 cut(s) 296, 625
SmoI CTYRAG 2 cut(s) 296, 625
Sse9I AATT 9 cut(s) 415, 438, 633, 673, 924, 958, 1090, 1311, 1377
SsiI CCGC 8 cut(s) 272, 302, 493, 696, 776, 1083, 1168, 1252
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 3 cut(s) 275, 539, 885
SstI GAGCTC 1 cut(s) 880
StyD4I CCNGG 1 cut(s) 550
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 3 cut(s) 456, 654, 871
TaiI ACGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 161, 573, 631, 1248
TasI AATT 9 cut(s) 415, 438, 633, 673, 924, 958, 1090, 1311, 1377
TatI WGTACW 2 cut(s) 592, 643
TauI GCSGC 1 cut(s) 305
TfiI GAWTC 6 cut(s) 33, 188, 384, 433, 605, 794
Tru1I TTAA 8 cut(s) 99, 260, 297, 371, 626, 963, 1359, 1390
Tru9I TTAA 8 cut(s) 99, 260, 297, 371, 626, 963, 1359, 1390
TscAI CASTG 3 cut(s) 288, 921, 1085
TseFI GTSAC 2 cut(s) 17, 1072
TseI GCWGC 2 cut(s) 810, 1325
Tsp45I GTSAC 2 cut(s) 17, 1072
TspDTI ATGAA 4 cut(s) 41, 686, 1116, 1281
TspGWI ACGGA 1 cut(s) 60
TspRI CASTG 3 cut(s) 288, 921, 1085
Van91I CCANNNNNTGG 2 cut(s) 174, 1145
Vha464I CTTAAG 2 cut(s) 296, 625
VneI GTGCAC 1 cut(s) 457
VpaK11BI GGWCC 2 cut(s) 286, 1120
XapI RAATTY 2 cut(s) 415, 673
XceI RCATGY 1 cut(s) 53
XmiI GTMKAC 2 cut(s) 560, 656
XmnI GAANNNNTTC 2 cut(s) 546, 594
XspI CTAG 3 cut(s) 275, 539, 885
ZrmI AGTACT 2 cut(s) 594, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.