Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008138

Physical Location & Seq

Genomic Coordinates Forward (+)

42637905 .. 42638420

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAACAGAATCTCACCAAAAGGACATGTTGCCATTCTTGCATTTCCTTTTGGCTGCCACGCAAAGCCTGTGCTTAACTTGGTGTGCAAGCTTGCGAAAGCTGCCCCAAACACGCGCTTTTCTTTCTTCAACACAATGAAATCCAACGACTCGCTGTTCTCAGAATCAAAATCCGAGATTTTGGATAACATAATACCCTACAATGTATCAGATGGTGTTCCAACAAATCATGTCTTAACAGGAAACCCGCTAGAGGCGGCGGACCTTTTCCTCAAGGCGGCGCCTGAAAACTTCAAAACCTGCATTGAAAAGGCAATGGCAGACACAAGCACGCAGATCAGTTGTCTAATAACAGATGGATTCTTGGTCTTTGGTAGCCAAATGGCTGAGAATTTGGATGTTCCATGGATTCCAATTTGGATACCCTTACCTTGCACCCTGTTTGCTCATATTTACACTGACGTTATCCGCCATTTATATGCAAATGATGGTGTTATGGTCAAGGCAAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

172

Amino Acids

18.81

Weight (kDa)

6.49

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008138)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g22960
malus_domestica	MD10G1055200.v1.1
rosa_chinensis	RchiOBHm_Chr6g0302721 RchiOBHm_Chr7g0211711
rosa_laevigata	RLG00000002977 RLG00000002982 RLG00000002983 RLG00000011144
rosa_multiflora	Rmu_sc0001875.1_g000009 Rmu_sc0009897.1_g000005
rosa_roxburghii	Rroxscaffold_3G00247580 Rroxscaffold_7G00165380
rosa_rugosa	Rorug06G0316500 Rorug07G0127200
rosa_samantha	Rh6BG472700 Rh6CG442300 Rh6DG429000 Rh7AG260000 Rh7AG260200 Rh7BG253700 Rh7CG276900 Rh7DG267100
rosa_wichuraiana	Rw6G037220 Rw7G022190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	1 cut(s)	115
AciI	CCGC	5 cut(s)	248, 257, 260, 278, 469
AcsI	RAATTY	1 cut(s)	391
AcyI	GRCGYC	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	253, 277
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	3 cut(s)	130, 295, 308
AluBI	AGCT	2 cut(s)	91, 101
AluI	AGCT	2 cut(s)	91, 101
ApeKI	GCWGC	2 cut(s)	54, 101
ApoI	RAATTY	1 cut(s)	391
AspLEI	GCGC	2 cut(s)	117, 283
AspS9I	GGNCC	1 cut(s)	262
AsuHPI	GGTGA	1 cut(s)	6
AvaII	GGWCC	1 cut(s)	262
BanI	GGYRCC	1 cut(s)	280
BbvI	GCAGC	2 cut(s)	41, 88
BccI	CCATC	3 cut(s)	206, 350, 482
BciVI	GTATCC	1 cut(s)	414
BfaI	CTAG	2 cut(s)	251, 514
BfoI	RGCGCY	1 cut(s)	284
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	55, 102, 258, 279
BlsI	GCNGC	4 cut(s)	56, 103, 259, 280
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 277
Bse3DI	GCAATG	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	404
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	2 cut(s)	253, 277
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	2 cut(s)	174, 378
BseXI	GCAGC	2 cut(s)	41, 88
Bsh1236I	CGCG	1 cut(s)	115
BshNI	GGYRCC	1 cut(s)	280
BslI	CCNNNNNNNGG	2 cut(s)	253, 277
Bsp143I	GATC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	5 cut(s)	248, 257, 260, 278, 469
BspCNI	CTCAG	2 cut(s)	173, 379
BspFNI	CGCG	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	282
BspMI	ACCTGC	1 cut(s)	308
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	404
BssMI	GATC	1 cut(s)	336
BssNI	GRCGYC	1 cut(s)	281
BssT1I	CCWWGG	1 cut(s)	404
BstACI	GRCGYC	1 cut(s)	281
BstC8I	GCNNGC	3 cut(s)	89, 93, 332
BstDEI	CTNAG	2 cut(s)	160, 387
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	1 cut(s)	115
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	2 cut(s)	117, 283
BstKTI	GATC	1 cut(s)	339
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 101
BstNSI	RCATGY	1 cut(s)	29
BstUI	CGCG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	41, 88
BsuI	GTATCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	89, 93, 332
CfoI	GCGC	2 cut(s)	117, 283
Cfr13I	GGNCC	1 cut(s)	262
CviAII	CATG	3 cut(s)	26, 230, 405
CviJI	RGCY	6 cut(s)	54, 67, 91, 101, 378, 386
CviKI_1	RGCY	6 cut(s)	54, 67, 91, 101, 378, 386
DdeI	CTNAG	2 cut(s)	160, 387
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
EciI	GGCGGA	2 cut(s)	275, 458
Eco130I	CCWWGG	1 cut(s)	404
Eco47I	GGWCC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	404
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	404
FaeI	CATG	3 cut(s)	29, 233, 408
FaiI	YATR	8 cut(s)	27, 191, 231, 406, 450, 478, 480, 497
FatI	CATG	3 cut(s)	25, 229, 404
FauI	CCCGC	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	55, 102, 258, 279
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	4 cut(s)	55, 102, 258, 279
FspBI	CTAG	2 cut(s)	251, 514
GlaI	GCGC	2 cut(s)	116, 282
GluI	GCNGC	4 cut(s)	55, 102, 258, 279
HaeII	RGCGCY	1 cut(s)	284
HhaI	GCGC	2 cut(s)	117, 283
Hin1I	GRCGYC	1 cut(s)	281
Hin1II	CATG	3 cut(s)	29, 233, 408
Hin6I	GCGC	2 cut(s)	115, 281
HinP1I	GCGC	2 cut(s)	115, 281
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	5 cut(s)	9, 149, 164, 360, 409
HphI	GGTGA	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	163, 175, 211
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	41, 87, 303, 435, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 101
HpyF3I	CTNAG	2 cut(s)	160, 387
HpySE526I	ACGT	1 cut(s)	462
Hsp92I	GRCGYC	1 cut(s)	281
Hsp92II	CATG	3 cut(s)	29, 233, 408
HspAI	GCGC	2 cut(s)	115, 281
KasI	GGCGCC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	5 cut(s)	81, 225, 297, 313, 452
Lsp1109I	GCAGC	2 cut(s)	41, 88
MaeI	CTAG	2 cut(s)	251, 514
MaeII	ACGT	1 cut(s)	462
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	118
MluCI	AATT	2 cut(s)	391, 414
Mly113I	GGCGCC	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	168, 245
MnlI	CCTC	2 cut(s)	247, 281
MseI	TTAA	2 cut(s)	75, 236
MslI	CAYNNNNRTG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	115
MwoI	GCNNNNNNNGC	2 cut(s)	38, 101
NarI	GGCGCC	1 cut(s)	281
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	3 cut(s)	29, 233, 408
NlaIV	GGNNCC	1 cut(s)	282
NspI	RCATGY	1 cut(s)	29
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	4 cut(s)	9, 164, 360, 409
PkrI	GCNGC	4 cut(s)	56, 103, 259, 280
PleI	GAGTC	1 cut(s)	143
PluTI	GGCGCC	1 cut(s)	284
PpsI	GAGTC	1 cut(s)	143
PscI	ACATGT	1 cut(s)	25
PspN4I	GGNNCC	1 cut(s)	282
PspPI	GGNCC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	75, 236
SatI	GCNGC	4 cut(s)	55, 102, 258, 279
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	262
SchI	GAGTC	1 cut(s)	143
SetI	ASST	6 cut(s)	93, 103, 267, 302, 433, 465
SfoI	GGCGCC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	2 cut(s)	391, 414
SsiI	CCGC	5 cut(s)	248, 257, 260, 278, 469
SspDI	GGCGCC	1 cut(s)	280
SspMI	CTAG	2 cut(s)	251, 514
StyI	CCWWGG	1 cut(s)	404
TaiI	ACGT	1 cut(s)	465
TasI	AATT	2 cut(s)	391, 414
TauI	GCSGC	2 cut(s)	260, 281
TfiI	GAWTC	4 cut(s)	9, 164, 360, 409
Tru1I	TTAA	2 cut(s)	75, 236
Tru9I	TTAA	2 cut(s)	75, 236
TscAI	CASTG	1 cut(s)	463
TseI	GCWGC	2 cut(s)	54, 101
TspDTI	ATGAA	2 cut(s)	17, 152
TspRI	CASTG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	262
XapI	RAATTY	1 cut(s)	391
XceI	RCATGY	1 cut(s)	29
XspI	CTAG	2 cut(s)	251, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.