FvH4_5g23140

Protein SUPPRESSOR OF GENE SILENCING

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14481032 .. 14484494
3463 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23140.t2

Sequence Viewer

Length: 1491 bp
ATGAGTTCAAAAAGAGCAAACGGAAATGGGAGGGGCAAGCAAGTCATTGAAGCAGACAATTGGCAGCTAAGCCAAGGTGTAGCTGATCTTAGCATGGGTTCAGAAGAAGCTAATGGAGGGTGGGAAGAAGTTGGAAAGAAAACGAAGAACCGAACTGGAAGTAGTGCTGCAAAGGGTACTCAAAAGTCTAACACAAAGGCATGGGCGCACCAAGATGTCCAAAAGCTCAATATGTGGAGTGGTAACGGAGGATCACAAGTTGTTAATATGTTTAAACCAGCTGGAAGAGGAAACTCAAGGCTGCTACCTAACAGTACCCCTCAGCAAGTCATTACCCCTCCACTGCACAATGGGTGGAATTGGAAGTCAAAGGCTGGCAACAATGACAGATATGTGCCTGCTGCAGCTTATCCTGCTGATGATGATGATGAGTCTGATGCTTTGAGCGACCTTGATGATGAGGATGATGATGACGAAAATGACATTTTCAGTGATGACTCAGACTCTAGTCGTATGAGTCACGGCACTCAAAAGAACAGCAAGTGGTTCAAAGATTTCTTCGACATTTTGGATACGTTAAGCGTAGAGGATATAAATGATCCTAATAGGCAGTGGCACTGTCCTGCTTGCAAAGGAGGTCCTGGTGCCATTGAATGGTATCAAGGCATGCAGCCATTGATCAGACATGCGGAAACAAAAGGATCGAAAAGGGTGAAGCTTCACAGGCAGCTTGCACAACTTCTGGAAGCAGAGTTGAAGGTGCGGGGTACAACTGTTATACCTGCAGGTGTGGTGTTTGGTAAATGGGTAGGATTAAAAGAAGAGGACAGTGATCACAAAATTATCTGGCCTCCAATGGTAGTTATCATGAATACCAGACTTGATAAAGACGAAAGTGACAAATGGCTGGGTATGGGCACTGAGGAGCTTTTACTCTGCTTCAGCGCTTATCAACCTTCAAAGGGTAAACACTCTTATGGCCCCCAAGGACATTGTGGGATGAGCACTTTGATCTTTGAGCCATCGGCAATGGGTTACATTGAGGCTGCACGGCTGCATAGGCATTTTGCTGAGCAAGGTTTGGGCAGGGATGCTTGGGATCGTAGCCCTGTGTTGTTTCGTCCAGGTGGTAAACGACAGCTTTATGGTTTCATGGCAATGAAACAAGACTTGGATATATTCAACAAGCACTCAGAAGAGAAGCTTAAGCTGAAGTTTGAGGTAAGGTCCTACCAGGAAATGGTCCTCCACCCCTTGAGAAAGATGAGTGAGGAAAGTCAACAAGTTAACTATATGAAGACCAAGGTTGCTAAAGAAGAGAAACACAGTCAGGCTATAGAAGATACTCTTCGTATAGTAAATGAGAAGATGCTAAAGATACAGGAGGAAAATCGCGTTTTGAGAGAGAGGACCAGGATGCACTATGAACAAAACAAAGAAGAGATGGATCTCCAAGAGGAATTTTACAAGGATATGCTATCCCGTACCTAA

Protein Analysis

497

Amino Acids

56.42

Weight (kDa)

6.15

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-XS PF03470 207 - 245 5.3e-09 XS zinc finger domain
XS PF03468 278 - 391 4.2e-29 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 776
Acc36I ACCTGC 2 cut(s) 776, 790
AccB1I GGYRCC 1 cut(s) 644
AccB7I CCANNNNNTGG 2 cut(s) 654, 1240
AccII CGCG 1 cut(s) 1395
AciI CCGC 2 cut(s) 689, 763
AclWI GGATC 5 cut(s) 259, 593, 709, 1107, 1455
AcsI RAATTY 1 cut(s) 1460
AcuI CTGAAG 2 cut(s) 925, 1232
AfaI GTAC 4 cut(s) 178, 316, 769, 1486
AfeI AGCGCT 1 cut(s) 946
AfiI CCNNNNNNNGG 3 cut(s) 654, 962, 1240
AflII CTTAAG 1 cut(s) 1205
AgsI TTSAA 7 cut(s) 9, 50, 550, 653, 757, 960, 1183
AjnI CCWGG 4 cut(s) 640, 1123, 1233, 1412
AjuI GAANNNNNNNTTGG 2 cut(s) 1154, 1186
Alw21I GWGCWC 1 cut(s) 1007
AlwI GGATC 5 cut(s) 259, 593, 709, 1107, 1455
Aor51HI AGCGCT 1 cut(s) 946
AoxI GGCC 2 cut(s) 848, 979
ApeKI GCWGC 9 cut(s) 64, 167, 301, 401, 404, 670, 727, 1046, 1054
ApoI RAATTY 1 cut(s) 1460
AspLEI GCGC 2 cut(s) 208, 947
AspS9I GGNCC 5 cut(s) 638, 980, 1227, 1243, 1410
AsuHPI GGTGA 1 cut(s) 724
AvaII GGWCC 4 cut(s) 638, 1227, 1243, 1410
BaeGI GKGCMC 1 cut(s) 920
BaeI ACNNNNGTAYC 2 cut(s) 759, 792
BanI GGYRCC 1 cut(s) 644
BbsI GAAGAC 1 cut(s) 1304
Bbv12I GWGCWC 1 cut(s) 1007
BbvCI CCTCAGC 1 cut(s) 321
BbvI GCAGC 9 cut(s) 76, 154, 288, 388, 416, 682, 739, 1033, 1041
BccI CCATC 2 cut(s) 1030, 1438
BceAI ACGGC 2 cut(s) 538, 1067
BciT130I CCWGG 4 cut(s) 642, 1125, 1235, 1414
BciVI GTATCC 1 cut(s) 565
BclI TGATCA 2 cut(s) 678, 832
BfaI CTAG 1 cut(s) 507
BfmI CTRYAG 3 cut(s) 402, 783, 1335
BfoI RGCGCY 1 cut(s) 948
BfrI CTTAAG 1 cut(s) 1205
BfuAI ACCTGC 2 cut(s) 776, 790
BfuI GTATCC 1 cut(s) 565
BisI GCNGC 9 cut(s) 65, 168, 302, 402, 405, 671, 728, 1047, 1055
BlpI GCTNAGC 2 cut(s) 68, 1071
BlsI GCNGC 9 cut(s) 66, 169, 303, 403, 406, 672, 729, 1048, 1056
Bme1390I CCNGG 4 cut(s) 642, 1125, 1235, 1414
Bme18I GGWCC 4 cut(s) 638, 1227, 1243, 1410
BmgT120I GGNCC 5 cut(s) 638, 980, 1227, 1243, 1410
BmiI GGNNCC 2 cut(s) 646, 982
BmrFI CCNGG 4 cut(s) 642, 1125, 1235, 1414
BmsI GCATC 4 cut(s) 427, 1081, 1359, 1407
BoxI GACNNNNGTC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 1304
Bpu10I CCTNAGC 1 cut(s) 321
Bpu1102I GCTNAGC 2 cut(s) 68, 1071
BpuEI CTTGAG 2 cut(s) 280, 1276
BsaJI CCNNGG 3 cut(s) 73, 985, 1302
Bsc4I CCNNNNNNNGG 3 cut(s) 654, 962, 1240
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 1035, 1164
BseBI CCWGG 4 cut(s) 642, 1125, 1235, 1414
BseDI CCNNGG 3 cut(s) 73, 985, 1302
BseGI GGATG 4 cut(s) 469, 1005, 1096, 1422
BseLI CCNNNNNNNGG 3 cut(s) 654, 962, 1240
BseMI GCAATG 2 cut(s) 1035, 1164
BseMII CTCAG 5 cut(s) 335, 513, 912, 1062, 1206
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 938
BseSI GKGCMC 1 cut(s) 920
BseXI GCAGC 9 cut(s) 76, 154, 288, 388, 416, 682, 739, 1033, 1041
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 2 cut(s) 329, 1032
Bsh1236I CGCG 1 cut(s) 1395
BshFI GGCC 2 cut(s) 850, 981
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 1 cut(s) 1007
BslI CCNNNNNNNGG 3 cut(s) 654, 962, 1240
BsnI GGCC 2 cut(s) 850, 981
Bsp1286I GDGCHC 2 cut(s) 920, 1007
Bsp143I GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
Bsp1720I GCTNAGC 2 cut(s) 68, 1071
BspACI CCGC 2 cut(s) 689, 763
BspANI GGCC 2 cut(s) 850, 981
BspCNI CTCAG 5 cut(s) 334, 512, 913, 1063, 1205
BspFNI CGCG 1 cut(s) 1395
BspHI TCATGA 1 cut(s) 867
BspLI GGNNCC 2 cut(s) 646, 982
BspMAI CTGCAG 2 cut(s) 406, 787
BspMI ACCTGC 2 cut(s) 776, 790
BspPI GGATC 5 cut(s) 259, 593, 709, 1107, 1455
BspT107I GGYRCC 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 1205
BsrDI GCAATG 2 cut(s) 1035, 1164
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 73, 985, 1302
BssMI GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
BssT1I CCWWGG 3 cut(s) 73, 985, 1302
Bst2UI CCWGG 4 cut(s) 642, 1125, 1235, 1414
Bst4CI ACNGT 5 cut(s) 314, 620, 775, 830, 1328
Bst6I CTCTTC 6 cut(s) 280, 816, 1191, 1311, 1353, 1434
BstAFI CTTAAG 1 cut(s) 1205
BstC8I GCNNGC 6 cut(s) 38, 376, 399, 628, 668, 732
BstDEI CTNAG 7 cut(s) 68, 89, 321, 499, 921, 1071, 1192
BstF5I GGATG 4 cut(s) 469, 1005, 1096, 1422
BstFNI CGCG 1 cut(s) 1395
BstH2I RGCGCY 1 cut(s) 948
BstHHI GCGC 2 cut(s) 208, 947
BstKTI GATC 9 cut(s) 88, 254, 601, 681, 704, 835, 1014, 1102, 1450
BstMBI GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
BstMWI GCNNNNNNNGC 3 cut(s) 413, 724, 1060
BstNI CCWGG 4 cut(s) 642, 1125, 1235, 1414
BstNSI RCATGY 2 cut(s) 670, 689
BstPAI GACNNNNGTC 1 cut(s) 507
BstSCI CCNGG 4 cut(s) 640, 1123, 1233, 1412
BstSFI CTRYAG 3 cut(s) 402, 783, 1335
BstSLI GKGCMC 1 cut(s) 920
BstUI CGCG 1 cut(s) 1395
BstV1I GCAGC 9 cut(s) 76, 154, 288, 388, 416, 682, 739, 1033, 1041
BstV2I GAAGAC 1 cut(s) 1304
BstX2I RGATCY 1 cut(s) 1447
BstYI RGATCY 1 cut(s) 1447
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 850, 981
BtsCI GGATG 4 cut(s) 469, 1005, 1096, 1422
BtsI GCAGTG 2 cut(s) 341, 617
BtsIMutI CAGTG 6 cut(s) 341, 496, 616, 617, 835, 918
BveI ACCTGC 2 cut(s) 776, 790
Cac8I GCNNGC 6 cut(s) 38, 376, 399, 628, 668, 732
CciI TCATGA 1 cut(s) 867
CfoI GCGC 2 cut(s) 208, 947
Cfr13I GGNCC 5 cut(s) 638, 980, 1227, 1243, 1410
Csp6I GTAC 4 cut(s) 177, 315, 768, 1485
CviAII CATG 6 cut(s) 94, 201, 667, 686, 868, 1153
CviQI GTAC 4 cut(s) 177, 315, 768, 1485
DdeI CTNAG 7 cut(s) 68, 89, 321, 499, 921, 1071, 1192
DpnI GATC 9 cut(s) 87, 253, 600, 680, 703, 834, 1013, 1101, 1449
DpnII GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
DraI TTTAAA 1 cut(s) 274
Eam1104I CTCTTC 6 cut(s) 280, 816, 1191, 1311, 1353, 1434
EarI CTCTTC 6 cut(s) 280, 816, 1191, 1311, 1353, 1434
Eco130I CCWWGG 3 cut(s) 73, 985, 1302
Eco47I GGWCC 4 cut(s) 638, 1227, 1243, 1410
Eco47III AGCGCT 1 cut(s) 946
Eco57I CTGAAG 2 cut(s) 925, 1232
EcoO109I RGGNCCY 2 cut(s) 638, 1227
EcoRII CCWGG 4 cut(s) 640, 1123, 1233, 1412
EcoT14I CCWWGG 3 cut(s) 73, 985, 1302
ErhI CCWWGG 3 cut(s) 73, 985, 1302
FaeI CATG 6 cut(s) 97, 204, 670, 689, 871, 1156
FalI AAGNNNNNCTT 4 cut(s) 1188, 1220, 1332, 1364
FatI CATG 6 cut(s) 93, 200, 666, 685, 867, 1152
FauI CCCGC 1 cut(s) 756
FbaI TGATCA 2 cut(s) 678, 832
Fnu4HI GCNGC 9 cut(s) 65, 168, 302, 402, 405, 671, 728, 1047, 1055
FokI GGATG 4 cut(s) 476, 1012, 1103, 1429
Fsp4HI GCNGC 9 cut(s) 65, 168, 302, 402, 405, 671, 728, 1047, 1055
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 207, 946
GluI GCNGC 9 cut(s) 65, 168, 302, 402, 405, 671, 728, 1047, 1055
GsaI CCCAGC 1 cut(s) 911
HaeII RGCGCY 1 cut(s) 948
HaeIII GGCC 2 cut(s) 850, 981
HhaI GCGC 2 cut(s) 208, 947
Hin1II CATG 6 cut(s) 97, 204, 670, 689, 871, 1156
Hin6I GCGC 2 cut(s) 206, 945
HinP1I GCGC 2 cut(s) 206, 945
HincII GTYRAC 2 cut(s) 1280, 1288
HindII GTYRAC 2 cut(s) 1280, 1288
HindIII AAGCTT 2 cut(s) 716, 1202
HinfI GANTC 4 cut(s) 431, 497, 503, 517
HpaI GTTAAC 1 cut(s) 1288
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 4 cut(s) 968, 1133, 1280, 1288
Hpy188I TCNGA 5 cut(s) 103, 436, 502, 683, 1195
Hpy188III TCNNGA 2 cut(s) 743, 868
Hpy8I GTNNAC 4 cut(s) 968, 1133, 1280, 1288
HpyAV CCTTC 2 cut(s) 751, 966
HpyCH4III ACNGT 5 cut(s) 314, 620, 775, 830, 1328
HpyCH4IV ACGT 1 cut(s) 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 413, 724, 1060
HpyF3I CTNAG 7 cut(s) 68, 89, 321, 499, 921, 1071, 1192
HpySE526I ACGT 1 cut(s) 575
Hsp92II CATG 6 cut(s) 97, 204, 670, 689, 871, 1156
HspAI GCGC 2 cut(s) 206, 945
Ksp22I TGATCA 2 cut(s) 678, 832
KspAI GTTAAC 1 cut(s) 1288
Kzo9I GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
LmnI GCTCC 1 cut(s) 925
Lsp1109I GCAGC 9 cut(s) 76, 154, 288, 388, 416, 682, 739, 1033, 1041
LweI GCATC 4 cut(s) 427, 1081, 1359, 1407
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 575
MaeIII GTNAC 4 cut(s) 242, 518, 896, 1034
MalI GATC 9 cut(s) 87, 253, 600, 680, 703, 834, 1013, 1101, 1449
MboI GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
MfeI CAATTG 1 cut(s) 58
MflI RGATCY 1 cut(s) 1447
MhlI GDGCHC 2 cut(s) 920, 1007
MluCI AATT 4 cut(s) 58, 358, 840, 1460
MlyI GAGTC 4 cut(s) 440, 491, 497, 526
MmeI TCCRAC 1 cut(s) 112
MseI TTAA 6 cut(s) 264, 273, 578, 815, 1206, 1287
MslI CAYNNNNRTG 3 cut(s) 213, 975, 1157
MspA1I CMGCKG 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 1205
MspR9I CCNGG 4 cut(s) 642, 1125, 1235, 1414
MssI GTTTAAAC 1 cut(s) 274
MunI CAATTG 1 cut(s) 58
MvaI CCWGG 4 cut(s) 642, 1125, 1235, 1414
MvnI CGCG 1 cut(s) 1395
MwoI GCNNNNNNNGC 3 cut(s) 413, 724, 1060
NdeII GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
NlaIII CATG 6 cut(s) 97, 204, 670, 689, 871, 1156
NlaIV GGNNCC 2 cut(s) 646, 982
NmuCI GTSAC 2 cut(s) 518, 896
NspI RCATGY 2 cut(s) 670, 689
PaeI GCATGC 1 cut(s) 670
PagI TCATGA 1 cut(s) 867
PaqCI CACCTGC 1 cut(s) 776
PflMI CCANNNNNTGG 2 cut(s) 654, 1240
PkrI GCNGC 9 cut(s) 66, 169, 303, 403, 406, 672, 729, 1048, 1056
PleI GAGTC 4 cut(s) 439, 491, 497, 525
PmeI GTTTAAAC 1 cut(s) 274
PpsI GAGTC 4 cut(s) 439, 491, 497, 525
PpuMI RGGWCCY 2 cut(s) 638, 1227
PshAI GACNNNNGTC 1 cut(s) 507
Psp5II RGGWCCY 2 cut(s) 638, 1227
Psp6I CCWGG 4 cut(s) 640, 1123, 1233, 1412
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 4 cut(s) 640, 1123, 1233, 1412
PspN4I GGNNCC 2 cut(s) 646, 982
PspPI GGNCC 5 cut(s) 638, 980, 1227, 1243, 1410
PspPPI RGGWCCY 2 cut(s) 638, 1227
PstI CTGCAG 2 cut(s) 406, 787
PsuI RGATCY 1 cut(s) 1447
PvuII CAGCTG 1 cut(s) 281
RsaI GTAC 4 cut(s) 178, 316, 769, 1486
RsaNI GTAC 4 cut(s) 177, 315, 768, 1485
RseI CAYNNNNRTG 3 cut(s) 213, 975, 1157
SaqAI TTAA 6 cut(s) 264, 273, 578, 815, 1206, 1287
SatI GCNGC 9 cut(s) 65, 168, 302, 402, 405, 671, 728, 1047, 1055
Sau3AI GATC 9 cut(s) 85, 251, 598, 678, 701, 832, 1011, 1099, 1447
Sau96I GGNCC 5 cut(s) 638, 980, 1227, 1243, 1410
SbfI CCTGCAGG 1 cut(s) 787
SchI GAGTC 4 cut(s) 440, 491, 497, 526
ScrFI CCNGG 4 cut(s) 642, 1125, 1235, 1414
SdaI CCTGCAGG 1 cut(s) 787
SduI GDGCHC 2 cut(s) 920, 1007
SfaNI GCATC 4 cut(s) 427, 1081, 1359, 1407
SfcI CTRYAG 3 cut(s) 402, 783, 1335
SinI GGWCC 4 cut(s) 638, 1227, 1243, 1410
SmiMI CAYNNNNRTG 3 cut(s) 213, 975, 1157
SmlI CTYRAG 3 cut(s) 295, 1205, 1255
SmoI CTYRAG 3 cut(s) 295, 1205, 1255
SphI GCATGC 1 cut(s) 670
Sse8387I CCTGCAGG 1 cut(s) 787
Sse9I AATT 4 cut(s) 58, 358, 840, 1460
SsiI CCGC 2 cut(s) 689, 763
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 4 cut(s) 640, 1123, 1233, 1412
StyI CCWWGG 3 cut(s) 73, 985, 1302
TaaI ACNGT 5 cut(s) 314, 620, 775, 830, 1328
TaiI ACGT 1 cut(s) 578
TaqI TCGA 2 cut(s) 561, 704
TasI AATT 4 cut(s) 58, 358, 840, 1460
Tru1I TTAA 6 cut(s) 264, 273, 578, 815, 1206, 1287
Tru9I TTAA 6 cut(s) 264, 273, 578, 815, 1206, 1287
TscAI CASTG 6 cut(s) 348, 496, 617, 623, 835, 925
TseFI GTSAC 2 cut(s) 518, 896
TseI GCWGC 9 cut(s) 64, 167, 301, 401, 404, 670, 727, 1046, 1054
Tsp45I GTSAC 2 cut(s) 518, 896
TspDTI ATGAA 5 cut(s) 884, 1141, 1175, 1310, 1440
TspGWI ACGGA 2 cut(s) 36, 261
TspRI CASTG 6 cut(s) 348, 496, 617, 623, 835, 925
Van91I CCANNNNNTGG 2 cut(s) 654, 1240
Vha464I CTTAAG 1 cut(s) 1205
VpaK11BI GGWCC 4 cut(s) 638, 1227, 1243, 1410
XapI RAATTY 1 cut(s) 1460
XceI RCATGY 2 cut(s) 670, 689
XcmI CCANNNNNNNNNTGG 1 cut(s) 992
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.