MD06G1181900.v1.1

Protein SUPPRESSOR OF GENE SILENCING

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Forward (+)
32089254 .. 32091907
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1181900.v1.1.491

Sequence Viewer

Length: 1491 bp
ATGAGTTCAAGAAGAGGCGGTGGAAATGCGAAAGGAAAGCAGTTGAGTCAGGGTGTAGCAAACATTAGCCTGGACTCGGCACAGGACAATGGAGAATGGGAGGTAATTGGCAAGAAAACGAAGAACAGAGGTGGTGGCAGATTTGGTCCTCAAAATTCTAGTTACAAGGCTTGGGGACCACCGCCCCAAGGTGTTCCAATCACAGGCATGCGTGGTTCACAAGCTGCTCATTCTCAAAAACCTGCTGGAGGAAGAAATGCAAGGAATCAGTATAACAGCACTGGTGGTTTCGGAGATAACTCTGTGGCCCCGAAAAATGTGATTCCCCCTCCGCTGGACCAAGGATGGAACTGGCAATCCAGAGCTGGCAAGAAAGACAAGAATGTGGCTCCTCCTGTTGCTGTTGCCGAAGATTATGGTGACGAGGACAACTCTGATCCTCTGAGTGATCTTGATGACTCGGATGAGGATCTTTTCAGTGATGAGTTTGACTCTGACTCTAGTGAAAAGAGTCATGAAACTCGAAAGAAGAGTAACTGGTTCAAACAATTCTTCGATGAGTTTGATCGTTTAAGTGTGGATGAGGTTGCTGATCCTGCCAGGCGATGGCACTGCCCTGCGTGCAAAAAGGGTCCCGGAGCAATTGATTGGTATGATGGCCTGCAGCCCCTCAAAAGGCATGCAGAAACTAAAGGGGCAAAGCGGGTGAAGCTCCATCGAGAGCTTGCAAAACTTATAGATGCGGAGTTGCAGCTGAAGGGAGCATCTGTCACACCTGTGGGCCAAGTATTCGGCAGATGGGCAGCTCTGAAAGATGAGGAAAAGAATCGCAAAGTTATCTGGCCTCCGATGGTGCTTATCATGAACACAAAACTCGAACAGGATGAATTTGACAAGTGGATTGGAATGGGGACCGAGGAGCTTCTTGATTTGTTTGATGATTATCATGCTAGTAAGGCTCGACACTCATATGGTCCGCAGGGACATTGTGGGATGAGCATGTTGATTTTTGAGGCCTCAGCGATGGGGCATTTTGAGGCGGAGCGGCTGCACAGGCATTTTGCAGACCAAGGATTTGGTAGGGATGCGTGGGAGCGCAATCCTGTCTTGTTTCGTCCAGGTCTTATCCGACAGCTCTATGGTTTCTTGCCAACCAAGCGAGACTTGGATTCTTTCAATCACCACTGCGATGATAAAGGGAGGGTGAAATTCGATATAAAATCTTACCAGGAGATGGTCTTGCAGCCGACAAGGCAGATGAGTCTGGACAGCGAAGAGGTTATTCGGCTGAAGGACAAGCTCCCGAAAGAAATGAGGCTCAGGAAAGATGCTGAGGAAACTAATGCCATACTTCGTGGTAAGATCGAAAAGCTGCAAGATGAAAATCGTAGTTTGAAGCAGAGGATCACAAAGCATCTGGAAGAGAACAAGGAAGAGATGATTCTGCAGGAAGAATTCTACAAAGGTGTTATATCTCTTCCTCGAGATTAA

Protein Analysis

497

Amino Acids

56.22

Weight (kDa)

6.73

Isoelectric Point (pI)

50.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-XS PF03470 205 - 243 4.1e-08 XS zinc finger domain
XS PF03468 277 - 390 1.7e-26 XS domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccB7I CCANNNNNTGG 2 cut(s) 606, 1234
AccBSI CCGCTC 1 cut(s) 1045
AciI CCGC 8 cut(s) 18, 182, 332, 703, 743, 977, 1040, 1045
AclWI GGATC 4 cut(s) 431, 477, 587, 1412
AcsI RAATTY 4 cut(s) 154, 887, 1208, 1454
AcuI CTGAAG 2 cut(s) 776, 1310
AfiI CCNNNNNNNGG 8 cut(s) 76, 188, 203, 248, 334, 606, 675, 1234
AgsI TTSAA 4 cut(s) 9, 544, 1177, 1396
AjnI CCWGG 4 cut(s) 69, 599, 1117, 1227
AleI CACNNNNGTG 1 cut(s) 776
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
Alw26I GTCTC 1 cut(s) 1155
AlwI GGATC 4 cut(s) 431, 477, 587, 1412
Ama87I CYCGRG 1 cut(s) 1482
AoxI GGCC 5 cut(s) 306, 658, 781, 842, 1014
ApeKI GCWGC 7 cut(s) 224, 664, 751, 803, 1048, 1243, 1372
ApoI RAATTY 4 cut(s) 154, 887, 1208, 1454
ArsI GACNNNNNNTTYG 2 cut(s) 1058, 1090
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 8 cut(s) 146, 176, 307, 337, 632, 781, 912, 974
AsuC2I CCSGG 1 cut(s) 636
AsuHPI GGTGA 4 cut(s) 431, 718, 1172, 1216
AvaI CYCGRG 1 cut(s) 1482
AvaII GGWCC 6 cut(s) 146, 176, 337, 632, 912, 974
BbvCI CCTCAGC 2 cut(s) 1018, 1332
BbvI GCAGC 7 cut(s) 211, 676, 763, 815, 1035, 1255, 1359
BccI CCATC 8 cut(s) 339, 600, 650, 723, 792, 844, 1018, 1228
BcgI CGANNNNNNTGC 2 cut(s) 594, 628
BciT130I CCWGG 4 cut(s) 71, 601, 1119, 1229
BcnI CCSGG 1 cut(s) 636
BcoDI GTCTC 1 cut(s) 1155
BfaI CTAG 3 cut(s) 159, 501, 951
BfmI CTRYAG 2 cut(s) 662, 1445
BfuAI ACCTGC 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 1252
BisI GCNGC 8 cut(s) 225, 665, 752, 804, 1046, 1049, 1244, 1373
BlsI GCNGC 8 cut(s) 226, 666, 753, 805, 1047, 1050, 1245, 1374
Bme1390I CCNGG 5 cut(s) 71, 601, 636, 1119, 1229
Bme18I GGWCC 6 cut(s) 146, 176, 337, 632, 912, 974
BmeT110I CYCGRG 1 cut(s) 1482
BmgT120I GGNCC 8 cut(s) 146, 176, 307, 337, 632, 781, 912, 974
BmiI GGNNCC 6 cut(s) 177, 309, 390, 633, 634, 913
BmrFI CCNGG 5 cut(s) 71, 601, 636, 1119, 1229
BmsI GCATC 5 cut(s) 730, 773, 1075, 1318, 1423
BplI GAGNNNNNCTC 4 cut(s) 416, 448, 476, 508
BpmI CTGGAG 1 cut(s) 267
Bpu10I CCTNAGC 3 cut(s) 1018, 1319, 1332
BpuMI CCSGG 1 cut(s) 636
BsaBI GATNNNNATC 3 cut(s) 468, 942, 1383
BsaJI CCNNGG 4 cut(s) 187, 340, 915, 1069
BsaXI ACNNNNNCTCC 2 cut(s) 753, 783
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 188, 203, 248, 334, 606, 675, 1234
Bse1I ACTGG 3 cut(s) 286, 356, 542
Bse8I GATNNNNATC 3 cut(s) 468, 942, 1383
BseBI CCWGG 4 cut(s) 71, 601, 1119, 1229
BseDI CCNNGG 4 cut(s) 187, 340, 915, 1069
BseGI GGATG 6 cut(s) 350, 469, 586, 889, 999, 1090
BseJI GATNNNNATC 3 cut(s) 468, 942, 1383
BseLI CCNNNNNNNGG 8 cut(s) 76, 188, 203, 248, 334, 606, 675, 1234
BseMII CTCAG 4 cut(s) 434, 1032, 1323, 1333
BseNI ACTGG 3 cut(s) 286, 356, 542
BseRI GAGGAG 2 cut(s) 381, 932
BseXI GCAGC 7 cut(s) 211, 676, 763, 815, 1035, 1255, 1359
BsgI GTGCAG 1 cut(s) 1034
BshFI GGCC 5 cut(s) 308, 660, 783, 844, 1016
BsiHKCI CYCGRG 1 cut(s) 1482
BsiSI CCGG 1 cut(s) 636
BslFI GGGAC 4 cut(s) 189, 618, 925, 996
BslI CCNNNNNNNGG 8 cut(s) 76, 188, 203, 248, 334, 606, 675, 1234
BsmAI GTCTC 1 cut(s) 1155
BsmFI GGGAC 4 cut(s) 189, 618, 925, 996
BsnI GGCC 5 cut(s) 308, 660, 783, 844, 1016
BsoBI CYCGRG 1 cut(s) 1482
Bsp143I GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
BspACI CCGC 8 cut(s) 18, 182, 332, 703, 743, 977, 1040, 1045
BspANI GGCC 5 cut(s) 308, 660, 783, 844, 1016
BspCNI CTCAG 4 cut(s) 435, 1031, 1324, 1332
BspHI TCATGA 2 cut(s) 514, 861
BspLI GGNNCC 6 cut(s) 177, 309, 390, 633, 634, 913
BspMAI CTGCAG 2 cut(s) 666, 1449
BspMI ACCTGC 1 cut(s) 250
BspPI GGATC 4 cut(s) 431, 477, 587, 1412
BsrBI CCGCTC 1 cut(s) 1045
BsrI ACTGG 3 cut(s) 286, 356, 542
BssECI CCNNGG 4 cut(s) 187, 340, 915, 1069
BssMI GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
BssT1I CCWWGG 3 cut(s) 187, 340, 1069
Bst2UI CCWGG 4 cut(s) 71, 601, 1119, 1229
Bst6I CTCTTC 6 cut(s) 7, 524, 1269, 1416, 1428, 1482
BstC8I GCNNGC 6 cut(s) 209, 367, 622, 662, 681, 726
BstDEI CTNAG 4 cut(s) 443, 1018, 1319, 1332
BstENI CCTNNNNNAGG 1 cut(s) 246
BstF5I GGATG 6 cut(s) 350, 469, 586, 889, 999, 1090
BstHHI GCGC 1 cut(s) 1098
BstKTI GATC 7 cut(s) 439, 451, 472, 568, 595, 1365, 1407
BstMAI GTCTC 1 cut(s) 1155
BstMBI GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
BstMWI GCNNNNNNNGC 7 cut(s) 596, 621, 709, 956, 1054, 1156, 1252
BstNI CCWGG 4 cut(s) 71, 601, 1119, 1229
BstNSI RCATGY 3 cut(s) 211, 683, 1003
BstSCI CCNGG 5 cut(s) 69, 599, 634, 1117, 1227
BstSFI CTRYAG 2 cut(s) 662, 1445
BstV1I GCAGC 7 cut(s) 211, 676, 763, 815, 1035, 1255, 1359
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 1076
BstYI RGATCY 1 cut(s) 469
BsuRI GGCC 5 cut(s) 308, 660, 783, 844, 1016
BtgZI GCGATG 3 cut(s) 619, 1037, 1203
BtsCI GGATG 6 cut(s) 350, 469, 586, 889, 999, 1090
BtsI GCAGTG 2 cut(s) 610, 1183
BtsIMutI CAGTG 4 cut(s) 279, 484, 610, 1183
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 6 cut(s) 209, 367, 622, 662, 681, 726
CciI TCATGA 2 cut(s) 514, 861
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 8 cut(s) 146, 176, 307, 337, 632, 781, 912, 974
CviAII CATG 6 cut(s) 208, 515, 680, 862, 947, 1000
DdeI CTNAG 4 cut(s) 443, 1018, 1319, 1332
DpnI GATC 7 cut(s) 438, 450, 471, 567, 594, 1364, 1406
DpnII GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
Eam1104I CTCTTC 6 cut(s) 7, 524, 1269, 1416, 1428, 1482
EarI CTCTTC 6 cut(s) 7, 524, 1269, 1416, 1428, 1482
EciI GGCGGA 1 cut(s) 1055
Eco130I CCWWGG 3 cut(s) 187, 340, 1069
Eco147I AGGCCT 1 cut(s) 1016
Eco47I GGWCC 6 cut(s) 146, 176, 337, 632, 912, 974
Eco57I CTGAAG 2 cut(s) 776, 1310
Eco88I CYCGRG 1 cut(s) 1482
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 632
EcoRI GAATTC 1 cut(s) 1454
EcoRII CCWGG 4 cut(s) 69, 599, 1117, 1227
EcoT14I CCWWGG 3 cut(s) 187, 340, 1069
ErhI CCWWGG 3 cut(s) 187, 340, 1069
FaeI CATG 6 cut(s) 211, 518, 683, 865, 950, 1003
FalI AAGNNNNNCTT 2 cut(s) 1148, 1180
FaqI GGGAC 4 cut(s) 189, 618, 925, 996
FatI CATG 6 cut(s) 207, 514, 679, 861, 946, 999
FauI CCCGC 1 cut(s) 696
FauNDI CATATG 1 cut(s) 970
Fnu4HI GCNGC 8 cut(s) 225, 665, 752, 804, 1046, 1049, 1244, 1373
FokI GGATG 6 cut(s) 357, 476, 593, 896, 1006, 1097
Fsp4HI GCNGC 8 cut(s) 225, 665, 752, 804, 1046, 1049, 1244, 1373
FspBI CTAG 3 cut(s) 159, 501, 951
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 8 cut(s) 225, 665, 752, 804, 1046, 1049, 1244, 1373
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 5 cut(s) 308, 660, 783, 844, 1016
HapII CCGG 1 cut(s) 636
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 6 cut(s) 211, 518, 683, 865, 950, 1003
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HpaII CCGG 1 cut(s) 636
HphI GGTGA 4 cut(s) 431, 718, 1172, 1216
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 8 cut(s) 293, 436, 444, 463, 496, 810, 849, 1130
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 751, 1285
HpyF10VI GCNNNNNNNGC 7 cut(s) 596, 621, 709, 956, 1054, 1156, 1252
HpyF3I CTNAG 4 cut(s) 443, 1018, 1319, 1332
Hsp92II CATG 6 cut(s) 211, 518, 683, 865, 950, 1003
HspAI GCGC 1 cut(s) 1096
KflI GGGWCCC 1 cut(s) 632
Kzo9I GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
LmnI GCTCC 8 cut(s) 394, 638, 717, 761, 919, 1042, 1093, 1305
Lsp1109I GCAGC 7 cut(s) 211, 676, 763, 815, 1035, 1255, 1359
LweI GCATC 5 cut(s) 730, 773, 1075, 1318, 1423
MaeI CTAG 3 cut(s) 159, 501, 951
MaeIII GTNAC 4 cut(s) 161, 419, 533, 769
MalI GATC 7 cut(s) 438, 450, 471, 567, 594, 1364, 1406
MbiI CCGCTC 1 cut(s) 1045
MboI GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 1 cut(s) 469
MluCI AATT 7 cut(s) 105, 154, 548, 642, 887, 1208, 1454
MlyI GAGTC 7 cut(s) 55, 68, 452, 485, 491, 520, 1270
MmeI TCCRAC 1 cut(s) 1153
MseI TTAA 2 cut(s) 572, 1489
MslI CAYNNNNRTG 4 cut(s) 206, 776, 969, 1188
MspA1I CMGCKG 2 cut(s) 334, 754
MspI CCGG 1 cut(s) 636
MspR9I CCNGG 5 cut(s) 71, 601, 636, 1119, 1229
MunI CAATTG 1 cut(s) 642
MvaI CCWGG 4 cut(s) 71, 601, 1119, 1229
MwoI GCNNNNNNNGC 7 cut(s) 596, 621, 709, 956, 1054, 1156, 1252
NciI CCSGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 970
NdeII GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
NlaIII CATG 6 cut(s) 211, 518, 683, 865, 950, 1003
NlaIV GGNNCC 6 cut(s) 177, 309, 390, 633, 634, 913
NmeAIII GCCGAG 1 cut(s) 56
NmuCI GTSAC 2 cut(s) 419, 769
NspI RCATGY 3 cut(s) 211, 683, 1003
OliI CACNNNNGTG 1 cut(s) 776
PaeI GCATGC 2 cut(s) 211, 683
PaeR7I CTCGAG 1 cut(s) 1482
PagI TCATGA 2 cut(s) 514, 861
PceI AGGCCT 1 cut(s) 1016
PfeI GAWTC 5 cut(s) 265, 322, 826, 1169, 1441
PflMI CCANNNNNTGG 2 cut(s) 606, 1234
PfoI TCCNGGA 1 cut(s) 634
PkrI GCNGC 8 cut(s) 226, 666, 753, 805, 1047, 1050, 1245, 1374
PleI GAGTC 7 cut(s) 54, 68, 452, 485, 491, 519, 1269
PpsI GAGTC 7 cut(s) 54, 68, 452, 485, 491, 519, 1269
PpuMI RGGWCCY 1 cut(s) 632
Psp5II RGGWCCY 1 cut(s) 632
Psp6I CCWGG 4 cut(s) 69, 599, 1117, 1227
PspGI CCWGG 4 cut(s) 69, 599, 1117, 1227
PspN4I GGNNCC 6 cut(s) 177, 309, 390, 633, 634, 913
PspPI GGNCC 8 cut(s) 146, 176, 307, 337, 632, 781, 912, 974
PspPPI RGGWCCY 1 cut(s) 632
PstI CTGCAG 2 cut(s) 666, 1449
PsuI RGATCY 1 cut(s) 469
PvuII CAGCTG 1 cut(s) 754
RseI CAYNNNNRTG 4 cut(s) 206, 776, 969, 1188
SaqAI TTAA 2 cut(s) 572, 1489
SatI GCNGC 8 cut(s) 225, 665, 752, 804, 1046, 1049, 1244, 1373
Sau3AI GATC 7 cut(s) 436, 448, 469, 565, 592, 1362, 1404
Sau96I GGNCC 8 cut(s) 146, 176, 307, 337, 632, 781, 912, 974
SchI GAGTC 7 cut(s) 55, 68, 452, 485, 491, 520, 1270
ScrFI CCNGG 5 cut(s) 71, 601, 636, 1119, 1229
SfaNI GCATC 5 cut(s) 730, 773, 1075, 1318, 1423
SfcI CTRYAG 2 cut(s) 662, 1445
Sfr274I CTCGAG 1 cut(s) 1482
SinI GGWCC 6 cut(s) 146, 176, 337, 632, 912, 974
SlaI CTCGAG 1 cut(s) 1482
SmiMI CAYNNNNRTG 4 cut(s) 206, 776, 969, 1188
SmlI CTYRAG 1 cut(s) 1482
SmoI CTYRAG 1 cut(s) 1482
SphI GCATGC 2 cut(s) 211, 683
Sse9I AATT 7 cut(s) 105, 154, 548, 642, 887, 1208, 1454
SseBI AGGCCT 1 cut(s) 1016
SsiI CCGC 8 cut(s) 18, 182, 332, 703, 743, 977, 1040, 1045
SspMI CTAG 3 cut(s) 159, 501, 951
StuI AGGCCT 1 cut(s) 1016
StyD4I CCNGG 5 cut(s) 69, 599, 634, 1117, 1227
StyI CCWWGG 3 cut(s) 187, 340, 1069
TaqI TCGA 8 cut(s) 523, 555, 718, 876, 961, 1212, 1365, 1483
TaqII GACCGA 1 cut(s) 929
TasI AATT 7 cut(s) 105, 154, 548, 642, 887, 1208, 1454
TauI GCSGC 1 cut(s) 1048
TfiI GAWTC 5 cut(s) 265, 322, 826, 1169, 1441
Tru1I TTAA 2 cut(s) 572, 1489
Tru9I TTAA 2 cut(s) 572, 1489
TscAI CASTG 4 cut(s) 286, 484, 617, 1190
TseFI GTSAC 2 cut(s) 419, 769
TseI GCWGC 7 cut(s) 224, 664, 751, 803, 1048, 1243, 1372
Tsp45I GTSAC 2 cut(s) 419, 769
TspDTI ATGAA 4 cut(s) 531, 878, 900, 1395
TspRI CASTG 4 cut(s) 286, 484, 617, 1190
Van91I CCANNNNNTGG 2 cut(s) 606, 1234
VpaK11BI GGWCC 6 cut(s) 146, 176, 337, 632, 912, 974
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 4 cut(s) 154, 887, 1208, 1454
XceI RCATGY 3 cut(s) 211, 683, 1003
XcmI CCANNNNNNNNNTGG 1 cut(s) 1162
XhoI CTCGAG 1 cut(s) 1482
XspI CTAG 3 cut(s) 159, 501, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.