Prupe.5G027600_v2.0.a1

Protein SUPPRESSOR OF GENE SILENCING

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
3216593 .. 3219560
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G027600.2

Sequence Viewer

Length: 1548 bp
ATGAGTTCAAGAAGAGGTGGTGGAAATTCCAAAGGGAAGGAAGTTCGTGAAGTCAATAGCCCGAAGGTTAAGCAGTTGAGCCATGGTGTAGCAGACATTAGCCTGGACTCGGCACAAGACGATGGAGAGTGGGCGGTAATTTCCAGAAAATCCAAGAACAGAGCTGGTAGCAGTGCTGCAAAACTAGTCCAATTGGGTCCTCAAAATTCTAATTATAAGGCGTGGGCACCGGCACATGATGCTCAGAAGCCAAGTATGCGAAATGGAACTGGTGGTTCACAAACTGCTAATTCTCAAAAACCAGCTGGAGGAAGAAATGCAAGGCAGCAGCCTAACAGTACTGGTGGTTTTGGAAGCAACTTTGTGGCCCGGCAACATTTGATTCCCCCTCCCCTGGACCATGGATGGAATTGGCAATCTAGAGCTGGTAAAAAAGACAACAATGTGGCTGCTGCTCTCGCTGATGATAATGATGATGACAACTCTGATCATATGAGCGACACTGACGAATATGATGACGAGCTATTCAGTGATGAGTTTGACTCGGATTCAAGTGAAAAGAGCCATGGCACTAGGAAGCAAAATAGATGGTTCAAGAAATTCTTTGAAAATTTGGATGGTTTAAGTGGAGGTGAGATTGGTAATCCTGACAGACAGTGGCACTGTCCTGCATGCAAAGGTGGTCGTGGTGCCATTGACTGGTACCAAGGCGTGCAGCCCCTGAAGAGACATGCCGAAACAAAAGGATCAAATAGGGTGAAGCTCCACAGAGAATTTGCAAAACTTTTGGATGTGGAGTTGCAGATGAGAGGAGTTATGACTCAATCTGTGGCTGCGGGTGAAGTATTTGGTAAATGGGTAGGTTTAAAAGATGAGGAAAAGGATTCCAAAATTGTCTGGCCTCCGATGGTTGTCATCACGAATACTAGACTTGAAAAGGATGAAAGTGGAAAGTGGATTGGTATGGGAACCGAGGAGCTTGCTGAATACTTCGGATCTTATCCTTATTTGAAGACTCGACACTCGTATGGTCCGCAGGGACACTGTGGTATGAGCATTTTGATTTTTGAGGCCTCAGCAATAGGCCATTTTGAGGCTGGGCTGCTGCACAAGAATTTTGCAGTGCAAGGATTAGGCAGGGATACTTGGGATTGTGGTCCTATCTTGTTTCGTGCAGGTGGTATTCGACAGCTTTACGGTTACATGGCAGTGAAACGAGACTTGGATATATTCAACCAGCATACCGAGGAGAAATCTAAGCTGAAATTTGAGCTGAGATCTTACCAAGAGGTGGTCCTACACCCAATGAGGCAAATGAGTGCGGACAGCCAACAGGTTATTTGGTTGAAGGACAAACTTCCTATAGAACAGAGGCTTAGAAAAGATGCTGAACAGACTAATGAGATACTTCGTGACAAGCTCGAGAAGGTGCAGGAGGAAAATCGCATTTTAAAACGGAGAATAAAAATGCAGCTTGAGGAGAACAAGGAAGAGATGGATCTGCAAGAAGAATTTTACAAAGATATAATGTCTCGTACCCGAGATTGA

Protein Analysis

516

Amino Acids

58.21

Weight (kDa)

7.27

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 216
AarI CACCTGC 1 cut(s) 1166
Acc36I ACCTGC 1 cut(s) 1166
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 3 cut(s) 226, 689, 702
AccB7I CCANNNNNTGG 2 cut(s) 699, 1291
AciI CCGC 4 cut(s) 134, 836, 1034, 1322
AclWI GGATC 3 cut(s) 754, 1003, 1506
AcsI RAATTY 8 cut(s) 25, 205, 599, 610, 773, 1114, 1265, 1511
AcuI CTGAAG 1 cut(s) 743
AfaI GTAC 3 cut(s) 340, 704, 1537
AfiI CCNNNNNNNGG 6 cut(s) 109, 308, 394, 699, 1093, 1291
AgsI TTSAA 8 cut(s) 9, 552, 595, 608, 935, 1012, 1234, 1348
AhlI ACTAGT 1 cut(s) 184
AjnI CCWGG 2 cut(s) 102, 393
AjuI GAANNNNNNNTTGG 2 cut(s) 1205, 1237
Alw26I GTCTC 3 cut(s) 721, 1212, 1536
AlwI GGATC 3 cut(s) 754, 1003, 1506
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 2 cut(s) 1421, 1539
AoxI GGCC 4 cut(s) 366, 899, 1071, 1084
ApoI RAATTY 8 cut(s) 25, 205, 599, 610, 773, 1114, 1265, 1511
Asp718I GGTACC 1 cut(s) 702
AspS9I GGNCC 6 cut(s) 197, 367, 397, 1031, 1157, 1294
AsuC2I CCSGG 1 cut(s) 370
AsuHPI GGTGA 3 cut(s) 644, 769, 851
AvaI CYCGRG 2 cut(s) 1421, 1539
AvaII GGWCC 5 cut(s) 197, 397, 1031, 1157, 1294
BaeGI GKGCMC 1 cut(s) 229
BanI GGYRCC 3 cut(s) 226, 689, 702
BbsI GAAGAC 1 cut(s) 1019
BbvCI CCTCAGC 1 cut(s) 1075
BccI CCATC 6 cut(s) 116, 399, 582, 611, 901, 1489
BcgI CGANNNNNNTGC 2 cut(s) 962, 996
BciT130I CCWGG 2 cut(s) 104, 395
BciVI GTATCC 1 cut(s) 1135
BclI TGATCA 1 cut(s) 487
BcnI CCSGG 1 cut(s) 370
BcoDI GTCTC 3 cut(s) 721, 1212, 1536
BcuI ACTAGT 1 cut(s) 184
BfaI CTAG 4 cut(s) 185, 420, 573, 927
BfmI CTRYAG 1 cut(s) 1362
BfuAI ACCTGC 1 cut(s) 1166
BfuI GTATCC 1 cut(s) 1135
BglII AGATCT 1 cut(s) 1277
BmcAI AGTACT 1 cut(s) 340
Bme1390I CCNGG 3 cut(s) 104, 370, 395
Bme18I GGWCC 5 cut(s) 197, 397, 1031, 1157, 1294
BmeT110I CYCGRG 2 cut(s) 1421, 1539
BmgT120I GGNCC 6 cut(s) 197, 367, 397, 1031, 1157, 1294
BmiI GGNNCC 5 cut(s) 198, 228, 691, 704, 970
BmrFI CCNGG 3 cut(s) 104, 370, 395
BmsI GCATC 2 cut(s) 229, 1375
BpiI GAAGAC 1 cut(s) 1019
BplI GAGNNNNNCTC 2 cut(s) 527, 559
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 1075
BpuEI CTTGAG 1 cut(s) 1496
BpuMI CCSGG 1 cut(s) 370
BsaJI CCNNGG 7 cut(s) 82, 393, 400, 565, 706, 972, 1245
Bsc4I CCNNNNNNNGG 6 cut(s) 109, 308, 394, 699, 1093, 1291
Bse118I RCCGGY 1 cut(s) 229
Bse1I ACTGG 3 cut(s) 274, 346, 704
BseBI CCWGG 2 cut(s) 104, 395
BseDI CCNNGG 7 cut(s) 82, 393, 400, 565, 706, 972, 1245
BseGI GGATG 4 cut(s) 410, 622, 796, 946
BseLI CCNNNNNNNGG 6 cut(s) 109, 308, 394, 699, 1093, 1291
BseMII CTCAG 3 cut(s) 257, 1089, 1265
BseNI ACTGG 3 cut(s) 274, 346, 704
BseRI GAGGAG 4 cut(s) 825, 989, 1262, 1493
BseSI GKGCMC 1 cut(s) 229
BseYI CCCAGC 1 cut(s) 1097
BsgI GTGCAG 4 cut(s) 734, 1091, 1194, 1451
BshFI GGCC 4 cut(s) 368, 901, 1073, 1086
BshNI GGYRCC 3 cut(s) 226, 689, 702
BsiHKCI CYCGRG 2 cut(s) 1421, 1539
BsiSI CCGG 2 cut(s) 230, 370
BslFI GGGAC 1 cut(s) 1053
BslI CCNNNNNNNGG 6 cut(s) 109, 308, 394, 699, 1093, 1291
BsmAI GTCTC 3 cut(s) 721, 1212, 1536
BsmFI GGGAC 1 cut(s) 1053
BsnI GGCC 4 cut(s) 368, 901, 1073, 1086
BsoBI CYCGRG 2 cut(s) 1421, 1539
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 5 cut(s) 487, 746, 995, 1277, 1498
Bsp19I CCATGG 3 cut(s) 82, 400, 565
BspACI CCGC 4 cut(s) 134, 836, 1034, 1322
BspANI GGCC 4 cut(s) 368, 901, 1073, 1086
BspCNI CTCAG 3 cut(s) 256, 1088, 1266
BspLI GGNNCC 5 cut(s) 198, 228, 691, 704, 970
BspMI ACCTGC 1 cut(s) 1166
BspPI GGATC 3 cut(s) 754, 1003, 1506
BspT107I GGYRCC 3 cut(s) 226, 689, 702
BsrFI RCCGGY 1 cut(s) 229
BsrI ACTGG 3 cut(s) 274, 346, 704
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 7 cut(s) 82, 393, 400, 565, 706, 972, 1245
BssMI GATC 5 cut(s) 487, 746, 995, 1277, 1498
BssT1I CCWWGG 4 cut(s) 82, 400, 565, 706
Bst2UI CCWGG 2 cut(s) 104, 395
Bst4CI ACNGT 5 cut(s) 338, 657, 665, 1046, 1199
Bst6I CTCTTC 3 cut(s) 7, 719, 1485
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 673, 713, 981
BstDEI CTNAG 5 cut(s) 243, 1075, 1257, 1274, 1376
BstDSI CCRYGG 3 cut(s) 82, 400, 565
BstF5I GGATG 4 cut(s) 410, 622, 796, 946
BstKTI GATC 5 cut(s) 490, 749, 998, 1280, 1501
BstMAI GTCTC 3 cut(s) 721, 1212, 1536
BstMBI GATC 5 cut(s) 487, 746, 995, 1277, 1498
BstMWI GCNNNNNNNGC 3 cut(s) 239, 256, 458
BstNI CCWGG 2 cut(s) 104, 395
BstNSI RCATGY 2 cut(s) 675, 734
BstSCI CCNGG 3 cut(s) 102, 368, 393
BstSFI CTRYAG 1 cut(s) 1362
BstSLI GKGCMC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 1019
BstX2I RGATCY 3 cut(s) 995, 1277, 1498
BstYI RGATCY 3 cut(s) 995, 1277, 1498
BsuI GTATCC 1 cut(s) 1135
BsuRI GGCC 4 cut(s) 368, 901, 1073, 1086
BtgI CCRYGG 3 cut(s) 82, 400, 565
BtsCI GGATG 4 cut(s) 410, 622, 796, 946
BtsI GCAGTG 3 cut(s) 178, 1128, 1215
BtsIMutI CAGTG 8 cut(s) 178, 501, 535, 661, 662, 1042, 1128, 1215
BveI ACCTGC 1 cut(s) 1166
Cac8I GCNNGC 3 cut(s) 673, 713, 981
CaiI CAGNNNCTG 1 cut(s) 721
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 6 cut(s) 197, 367, 397, 1031, 1157, 1294
Csp6I GTAC 3 cut(s) 339, 703, 1536
CviAII CATG 7 cut(s) 83, 236, 401, 566, 672, 731, 1204
CviQI GTAC 3 cut(s) 339, 703, 1536
DdeI CTNAG 5 cut(s) 243, 1075, 1257, 1274, 1376
DpnI GATC 5 cut(s) 489, 748, 997, 1279, 1500
DpnII GATC 5 cut(s) 487, 746, 995, 1277, 1498
DraI TTTAAA 2 cut(s) 867, 1452
Eam1104I CTCTTC 3 cut(s) 7, 719, 1485
EarI CTCTTC 3 cut(s) 7, 719, 1485
Eco130I CCWWGG 4 cut(s) 82, 400, 565, 706
Eco147I AGGCCT 1 cut(s) 1073
Eco47I GGWCC 5 cut(s) 197, 397, 1031, 1157, 1294
Eco57I CTGAAG 1 cut(s) 743
Eco88I CYCGRG 2 cut(s) 1421, 1539
EcoO109I RGGNCCY 1 cut(s) 197
EcoRII CCWGG 2 cut(s) 102, 393
EcoT14I CCWWGG 4 cut(s) 82, 400, 565, 706
ErhI CCWWGG 4 cut(s) 82, 400, 565, 706
FaeI CATG 7 cut(s) 86, 239, 404, 569, 675, 734, 1207
FalI AAGNNNNNCTT 2 cut(s) 587, 619
FaqI GGGAC 1 cut(s) 1053
FatI CATG 7 cut(s) 82, 235, 400, 565, 671, 730, 1203
FauI CCCGC 1 cut(s) 829
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 487
FokI GGATG 4 cut(s) 417, 629, 803, 953
FspBI CTAG 4 cut(s) 185, 420, 573, 927
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 4 cut(s) 368, 901, 1073, 1086
HapII CCGG 2 cut(s) 230, 370
Hin1II CATG 7 cut(s) 86, 239, 404, 569, 675, 734, 1207
HinfI GANTC 7 cut(s) 107, 382, 542, 548, 820, 884, 1015
HpaII CCGG 2 cut(s) 230, 370
HphI GGTGA 3 cut(s) 644, 769, 851
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 5 cut(s) 246, 487, 547, 906, 995
Hpy188III TCNNGA 9 cut(s) 9, 47, 144, 420, 595, 647, 919, 1412, 1423
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 31, 58, 1342, 1420
HpyCH4III ACNGT 5 cut(s) 338, 657, 665, 1046, 1199
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 256, 458
HpyF3I CTNAG 5 cut(s) 243, 1075, 1257, 1274, 1376
Hsp92II CATG 7 cut(s) 86, 239, 404, 569, 675, 734, 1207
KpnI GGTACC 1 cut(s) 706
Ksp22I TGATCA 1 cut(s) 487
Kzo9I GATC 5 cut(s) 487, 746, 995, 1277, 1498
LmnI GCTCC 2 cut(s) 768, 976
LweI GCATC 2 cut(s) 229, 1375
MaeI CTAG 4 cut(s) 185, 420, 573, 927
MaeIII GTNAC 2 cut(s) 1199, 1412
MalI GATC 5 cut(s) 489, 748, 997, 1279, 1500
MboI GATC 5 cut(s) 487, 746, 995, 1277, 1498
MboII GAAGA 6 cut(s) 24, 324, 736, 1024, 1502, 1520
MfeI CAATTG 1 cut(s) 191
MflI RGATCY 3 cut(s) 995, 1277, 1498
MhlI GDGCHC 1 cut(s) 229
MlyI GAGTC 4 cut(s) 101, 536, 814, 1009
MseI TTAA 4 cut(s) 69, 623, 866, 1451
MslI CAYNNNNRTG 2 cut(s) 1026, 1208
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 2 cut(s) 230, 370
MspR9I CCNGG 3 cut(s) 104, 370, 395
MunI CAATTG 1 cut(s) 191
MvaI CCWGG 2 cut(s) 104, 395
MwoI GCNNNNNNNGC 3 cut(s) 239, 256, 458
NciI CCSGG 1 cut(s) 370
NcoI CCATGG 3 cut(s) 82, 400, 565
NdeI CATATG 1 cut(s) 492
NdeII GATC 5 cut(s) 487, 746, 995, 1277, 1498
NlaIII CATG 7 cut(s) 86, 239, 404, 569, 675, 734, 1207
NlaIV GGNNCC 5 cut(s) 198, 228, 691, 704, 970
NmeAIII GCCGAG 1 cut(s) 89
NmuCI GTSAC 1 cut(s) 1412
NspI RCATGY 2 cut(s) 675, 734
PaeI GCATGC 1 cut(s) 675
PaeR7I CTCGAG 1 cut(s) 1421
PaqCI CACCTGC 1 cut(s) 1166
PceI AGGCCT 1 cut(s) 1073
PfeI GAWTC 3 cut(s) 382, 548, 884
PflMI CCANNNNNTGG 2 cut(s) 699, 1291
PleI GAGTC 4 cut(s) 101, 536, 814, 1009
PpsI GAGTC 4 cut(s) 101, 536, 814, 1009
PpuMI RGGWCCY 1 cut(s) 197
PsiI TTATAA 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 102, 393
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 2 cut(s) 102, 393
PspN4I GGNNCC 5 cut(s) 198, 228, 691, 704, 970
PspPI GGNCC 6 cut(s) 197, 367, 397, 1031, 1157, 1294
PspPPI RGGWCCY 1 cut(s) 197
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 3 cut(s) 995, 1277, 1498
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 340, 704, 1537
RsaNI GTAC 3 cut(s) 339, 703, 1536
RseI CAYNNNNRTG 2 cut(s) 1026, 1208
SaqAI TTAA 4 cut(s) 69, 623, 866, 1451
Sau3AI GATC 5 cut(s) 487, 746, 995, 1277, 1498
Sau96I GGNCC 6 cut(s) 197, 367, 397, 1031, 1157, 1294
ScaI AGTACT 1 cut(s) 340
SchI GAGTC 4 cut(s) 101, 536, 814, 1009
ScrFI CCNGG 3 cut(s) 104, 370, 395
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 2 cut(s) 229, 1375
SfcI CTRYAG 1 cut(s) 1362
Sfr274I CTCGAG 1 cut(s) 1421
SinI GGWCC 5 cut(s) 197, 397, 1031, 1157, 1294
SlaI CTCGAG 1 cut(s) 1421
SmiMI CAYNNNNRTG 2 cut(s) 1026, 1208
SmlI CTYRAG 2 cut(s) 1421, 1475
SmoI CTYRAG 2 cut(s) 1421, 1475
SpeI ACTAGT 1 cut(s) 184
SphI GCATGC 1 cut(s) 675
SseBI AGGCCT 1 cut(s) 1073
SsiI CCGC 4 cut(s) 134, 836, 1034, 1322
SspMI CTAG 4 cut(s) 185, 420, 573, 927
StuI AGGCCT 1 cut(s) 1073
StyD4I CCNGG 3 cut(s) 102, 368, 393
StyI CCWWGG 4 cut(s) 82, 400, 565, 706
TaaI ACNGT 5 cut(s) 338, 657, 665, 1046, 1199
TaqI TCGA 3 cut(s) 1018, 1186, 1422
TatI WGTACW 1 cut(s) 338
TfiI GAWTC 3 cut(s) 382, 548, 884
Tru1I TTAA 4 cut(s) 69, 623, 866, 1451
Tru9I TTAA 4 cut(s) 69, 623, 866, 1451
TscAI CASTG 8 cut(s) 178, 508, 535, 662, 668, 1049, 1128, 1215
TseFI GTSAC 1 cut(s) 1412
Tsp45I GTSAC 1 cut(s) 1412
TspDTI ATGAA 1 cut(s) 957
TspGWI ACGGA 1 cut(s) 1471
TspRI CASTG 8 cut(s) 178, 508, 535, 662, 668, 1049, 1128, 1215
Van91I CCANNNNNTGG 2 cut(s) 699, 1291
VpaK11BI GGWCC 5 cut(s) 197, 397, 1031, 1157, 1294
XapI RAATTY 8 cut(s) 25, 205, 599, 610, 773, 1114, 1265, 1511
XbaI TCTAGA 1 cut(s) 419
XceI RCATGY 2 cut(s) 675, 734
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XhoI CTCGAG 1 cut(s) 1421
XspI CTAG 4 cut(s) 185, 420, 573, 927
ZrmI AGTACT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.