Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002538

Physical Location & Seq

Genomic Coordinates Forward (+)

19625626 .. 19627406

Gene Structure 1781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0216000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGTAAACGCTCTCGTGTGCAAACTACTGATCAGCCATGCCAAAATTCTGTAGAAGATGGACTTAATTCTGCTATTGGTACCACTACAGAACGAACTACTACGGGAATCAGAATTAGTTCACGTCTTCAGCATCAAACTGCGAATGATCAGCTATTGATAAATGTTACAACTGAAGAGCGAAATGATAATGTGATGTCAGCCAATAATCAAGAGCCTCCTACAGTTCGAAACCATGCCCCACTAAATGTGGAAAAATGGAAGAAGATTCCGAAAATTGAAGTGGATAAGTTGATTAAAAGAATAACGAACAAGTTTGACATTGACATGTCTCTTCCTTGGGTCGAGAGATATGTAATTACAACATGTCAGACTGTATTTTGTAATTTTCGTTATAAGTTGAAGAAACATTTTGAGAAATTTTCAACAATTGAGGAAGCAATTGAAAACAAACACGATGATGTCAAGACTCAGGAAGAATGGGAGTTTCTCTGTGCTCGTTTTTCTAGTGAAAAGTTTCAGATTCGTTCAGAAAAGAATGCTATAAATAGGTCAAAGTTGACACATCACCACAAATCTGGGTCAAAGTCATTTATGTCTCACCAAGAGCAAATTGCAGCACAGACTGGAGAGATACAAAGTGCAATTGATCGCTTTGAAACAGAGTACAAAAGCACTAAAAAAGGTTGGCTTGGGAGCAAAAGAAAAGATGAAATGATTAAGATGCGAACTGAGACAACTCAACTTGATGGAACTCGGACAATGACAGATGATGAAATTTGTGCAAAAGTACTCGGAGTCAAATCAGGCTACATCAAGGGTTGTGGTTTTGGCCCTAGACCTCCACCATTAAGGGTCTCTCATTTGTCGATAAATGAAATGTCTGAAAAGAACAAAGAGTTGCAAGAACAGCTTCAGAAGACCCAACACCTTGTAGGGACTCAACAACAAAAGATTGATGCACAAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010050 GO:0010166 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030677 GO:0030681 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

323

Amino Acids

37.24

Weight (kDa)

9.07

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	159 - 248	3.8e-09	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23570 AT5G23570 AT5G23570 AT5G23570
fragaria_vesca	FvH4_1g25920 FvH4_5g23140 FvH4_5g23140
malus_domestica	MD03G1212700.v1.1 MD03G1233800.v1.1 MD06G1181900.v1.1 MD14G1187800.v1.1
prunus_persica	Prupe.4G288400_v2.0.a1 Prupe.4G288400_v2.0.a1 Prupe.4G288400_v2.0.a1 Prupe.4G289100_v2.0.a1 Prupe.5G027600_v2.0.a1 Prupe.5G027600_v2.0.a1
pyrus_communis	pycom03g16150 pycom03g18030
rosa_chinensis	RchiOBHm_Chr3g0485061 RchiOBHm_Chr7g0212021
rosa_laevigata	RLG00000002944 RLG00000023171
rosa_multiflora	Rmu_sc0002283.1_g000007 Rmu_sc0006040.1_g000012 Rmu_sc0014812.1_g000006
rosa_roxburghii	Rroxscaffold_3G00247180 Rroxscaffold_6G00397210
rosa_rugosa	Rorug03G0215900 Rorug03G0216000 Rorug03G0216100 Rorug07G0130300
rosa_samantha	Rh3AG266000 Rh3BG301600 Rh3CG299900 Rh3DG295700 Rh7AG263100 Rh7BG257100 Rh7CG279700 Rh7DG269800
rosa_wichuraiana	Rw7G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
Acc65I	GGTACC	1 cut(s)	80
AccB1I	GGYRCC	1 cut(s)	80
AcsI	RAATTY	3 cut(s)	46, 419, 777
AcuI	CTGAAG	3 cut(s)	113, 195, 899
AfaI	GTAC	3 cut(s)	82, 668, 792
AflIII	ACRYGT	2 cut(s)	327, 365
AgsI	TTSAA	5 cut(s)	281, 403, 426, 446, 659
AjiI	CACGTC	1 cut(s)	125
AluBI	AGCT	2 cut(s)	154, 913
AluI	AGCT	2 cut(s)	154, 913
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	4 cut(s)	336, 603, 728, 862
AoxI	GGCC	1 cut(s)	832
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	3 cut(s)	46, 419, 777
Asp700I	GAANNNNTTC	3 cut(s)	118, 516, 912
Asp718I	GGTACC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	833
AsuHPI	GGTGA	2 cut(s)	560, 593
AsuII	TTCGAA	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	80
BauI	CACGAG	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	119, 926
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	629
BccI	CCATC	2 cut(s)	53, 743
BclI	TGATCA	2 cut(s)	31, 148
BcoDI	GTCTC	4 cut(s)	336, 603, 728, 862
BfaI	CTAG	2 cut(s)	507, 837
BfmI	CTRYAG	3 cut(s)	51, 87, 222
BisI	GCNGC	1 cut(s)	618
BlsI	GCNGC	1 cut(s)	619
BmcAI	AGTACT	1 cut(s)	792
BmgBI	CACGTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	833
BmiI	GGNNCC	1 cut(s)	82
BmsI	GCATC	3 cut(s)	142, 714, 949
BpiI	GAAGAC	2 cut(s)	119, 926
BpmI	CTGGAG	1 cut(s)	648
Bpu14I	TTCGAA	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	862
BsaJI	CCNNGG	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	631
BseDI	CCNNGG	1 cut(s)	338
BseMII	CTCAG	2 cut(s)	485, 723
BseNI	ACTGG	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	629
BshFI	GGCC	1 cut(s)	834
BshNI	GGYRCC	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	499
BslFI	GGGAC	1 cut(s)	952
BsmAI	GTCTC	4 cut(s)	336, 603, 728, 862
BsmFI	GGGAC	1 cut(s)	952
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	834
Bso31I	GGTCTC	1 cut(s)	862
Bsp119I	TTCGAA	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	31, 148, 649
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	2 cut(s)	484, 724
BspLI	GGNNCC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	171
BspT104I	TTCGAA	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	862
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	3 cut(s)	31, 148, 649
BssSI	CACGAG	1 cut(s)	15
BssT1I	CCWWGG	1 cut(s)	338
Bst2BI	CACGAG	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	226, 376
Bst6I	CTCTTC	2 cut(s)	171, 339
BstBI	TTCGAA	1 cut(s)	229
BstDEI	CTNAG	2 cut(s)	471, 732
BstKTI	GATC	3 cut(s)	34, 151, 652
BstMAI	GTCTC	4 cut(s)	336, 603, 728, 862
BstMBI	GATC	3 cut(s)	31, 148, 649
BstMWI	GCNNNNNNNGC	1 cut(s)	910
BstNSI	RCATGY	2 cut(s)	331, 369
BstSFI	CTRYAG	3 cut(s)	51, 87, 222
BstV1I	GCAGC	1 cut(s)	629
BstV2I	GAAGAC	2 cut(s)	119, 926
BstXI	CCANNNNNNTGG	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	834
BtrI	CACGTC	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	833
Csp6I	GTAC	3 cut(s)	81, 667, 791
CspCI	CAANNNNNGTGG	2 cut(s)	805, 840
CviAII	CATG	4 cut(s)	39, 236, 328, 366
CviJI	RGCY	8 cut(s)	37, 154, 203, 217, 691, 810, 834, 913
CviKI_1	RGCY	8 cut(s)	37, 154, 203, 217, 691, 810, 834, 913
CviQI	GTAC	3 cut(s)	81, 667, 791
DdeI	CTNAG	2 cut(s)	471, 732
DpnI	GATC	3 cut(s)	33, 150, 651
DpnII	GATC	3 cut(s)	31, 148, 649
Eam1104I	CTCTTC	2 cut(s)	171, 339
EarI	CTCTTC	2 cut(s)	171, 339
Eco130I	CCWWGG	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	862
Eco57I	CTGAAG	3 cut(s)	113, 195, 899
EcoT14I	CCWWGG	1 cut(s)	338
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	4 cut(s)	42, 239, 331, 369
FaiI	YATR	8 cut(s)	40, 237, 329, 354, 367, 396, 545, 596
FalI	AAGNNNNNCTT	6 cut(s)	48, 80, 675, 707, 897, 929
FaqI	GGGAC	1 cut(s)	952
FatI	CATG	4 cut(s)	38, 235, 327, 365
FbaI	TGATCA	2 cut(s)	31, 148
Fnu4HI	GCNGC	1 cut(s)	618
Fsp4HI	GCNGC	1 cut(s)	618
FspBI	CTAG	2 cut(s)	507, 837
GluI	GCNGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	648
HaeIII	GGCC	1 cut(s)	834
Hin1II	CATG	4 cut(s)	42, 239, 331, 369
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HinfI	GANTC	6 cut(s)	108, 268, 469, 523, 798, 940
HphI	GGTGA	2 cut(s)	560, 593
Hpy166II	GTNNAC	3 cut(s)	8, 122, 561
Hpy188I	TCNGA	9 cut(s)	113, 273, 372, 522, 532, 759, 797, 886, 918
Hpy188III	TCNNGA	4 cut(s)	212, 346, 466, 473
Hpy8I	GTNNAC	3 cut(s)	8, 122, 561
HpyCH4III	ACNGT	2 cut(s)	226, 376
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	6 cut(s)	22, 617, 644, 785, 904, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	910
HpyF3I	CTNAG	2 cut(s)	471, 732
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	42, 239, 331, 369
KpnI	GGTACC	1 cut(s)	84
Ksp22I	TGATCA	2 cut(s)	31, 148
Kzo9I	GATC	3 cut(s)	31, 148, 649
LguI	GCTCTTC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	696
LpnPI	CCDG	4 cut(s)	458, 564, 612, 792
Lsp1109I	GCAGC	1 cut(s)	629
LweI	GCATC	3 cut(s)	142, 714, 949
MaeI	CTAG	2 cut(s)	507, 837
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	3 cut(s)	33, 150, 651
MboI	GATC	3 cut(s)	31, 148, 649
MboII	GAAGA	9 cut(s)	68, 119, 188, 274, 277, 326, 415, 488, 931
MfeI	CAATTG	3 cut(s)	429, 441, 645
MhlI	GDGCHC	1 cut(s)	499
MlyI	GAGTC	3 cut(s)	463, 807, 934
MnlI	CCTC	3 cut(s)	228, 427, 852
MroXI	GAANNNNTTC	3 cut(s)	118, 516, 912
MseI	TTAA	4 cut(s)	66, 297, 720, 851
MslI	CAYNNNNRTG	2 cut(s)	326, 459
MunI	CAATTG	3 cut(s)	429, 441, 645
Mva1269I	GAATGC	1 cut(s)	544
MwoI	GCNNNNNNNGC	1 cut(s)	910
NdeII	GATC	3 cut(s)	31, 148, 649
NlaIII	CATG	4 cut(s)	42, 239, 331, 369
NlaIV	GGNNCC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	331, 369
NspV	TTCGAA	1 cut(s)	229
PciI	ACATGT	2 cut(s)	327, 365
PciSI	GCTCTTC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	544
PdmI	GAANNNNTTC	3 cut(s)	118, 516, 912
PfeI	GAWTC	3 cut(s)	108, 268, 523
PkrI	GCNGC	1 cut(s)	619
PleI	GAGTC	3 cut(s)	463, 806, 934
PpsI	GAGTC	3 cut(s)	463, 806, 934
PscI	ACATGT	2 cut(s)	327, 365
PsiI	TTATAA	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	1 cut(s)	833
RsaI	GTAC	3 cut(s)	82, 668, 792
RsaNI	GTAC	3 cut(s)	81, 667, 791
RseI	CAYNNNNRTG	2 cut(s)	326, 459
SapI	GCTCTTC	1 cut(s)	171
SaqAI	TTAA	4 cut(s)	66, 297, 720, 851
SatI	GCNGC	1 cut(s)	618
Sau3AI	GATC	3 cut(s)	31, 148, 649
Sau96I	GGNCC	1 cut(s)	833
ScaI	AGTACT	1 cut(s)	792
SchI	GAGTC	3 cut(s)	463, 807, 934
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	7 cut(s)	127, 156, 554, 688, 844, 915, 933
SfaNI	GCATC	3 cut(s)	142, 714, 949
SfcI	CTRYAG	3 cut(s)	51, 87, 222
SfuI	TTCGAA	1 cut(s)	229
SmiMI	CAYNNNNRTG	2 cut(s)	326, 459
SspMI	CTAG	2 cut(s)	507, 837
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	226, 376
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	3 cut(s)	229, 345, 869
TatI	WGTACW	2 cut(s)	666, 790
TfiI	GAWTC	3 cut(s)	108, 268, 523
Tru1I	TTAA	4 cut(s)	66, 297, 720, 851
Tru9I	TTAA	4 cut(s)	66, 297, 720, 851
TseI	GCWGC	1 cut(s)	617
TspDTI	ATGAA	3 cut(s)	726, 789, 891
XapI	RAATTY	3 cut(s)	46, 419, 777
XceI	RCATGY	2 cut(s)	331, 369
XmnI	GAANNNNTTC	3 cut(s)	118, 516, 912
XspI	CTAG	2 cut(s)	507, 837
ZrmI	AGTACT	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.