Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002538

Physical Location & Seq

Genomic Coordinates Reverse (-)

31943576 .. 31947129

Gene Structure 3554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1233800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGGTCTCTTTCGCGTACGCCTCCTTCAGTTCGCAGCGACTTCAAGTCAACCTTTCTTCTTGTACGTTTCACCGCTACTCGCTTCTCGCTTCTCGCTTCTCTCACCCTGACAGCCCCCGGCGCACCGCTCAACAGCCAGAAAGACACCGCCGACTGCACCCAGCCAGCAGGCAGCTGCACGGAGCCACTTCCGCGTGTGCGACAGACAACACGCTGCAGATTGACCCAGATTTTGGTATTGGATTGTTTGCTAGGATGAGTGCGAGAAGAAATGGTGGAAATTTCAAGGGAAAAGATGTCTTGGAAGTCAGCAGCCCCAAGATTGAACAGTTGACTCATTGTGTTGCAGACGTTAGCCTGGGCTCGGCCCAGGATGATGGAGAGTGGGAGGTAATTGCCAGGAAGTCGAAGAACAGAGCTGGAAGCAGTGCTGCAAAACAATGGGGTCCTCAGAATTCTAATTCTAAAGCTTGGGCACAGGTTGATGCTCAGAAGCCAGTTATGCGGAATAGTGGTGGGTCAGGAAGGGGTGCCGGAAACTTCTGGCCTTCACAAACTTCTGATATGAGAAAACCAGCGGGAAGAGGAAATGTAAGGCTGCAGTCTTCTGCCAGGGTTTCTGAAAACAGCTATGTGGCCCCACAACATGTGATTCCCCCTCCACTGGACCATGGATGGAACTGGCAATCTAGAGCTGGTGTTACTCAACCCAAGGGTTCAGAAGATGTCCACGGAAAAGATGACAAGGACAGCAATGCGGCTGCTGCTGCCGCAGCGGTTGATGATGATGATGATAACTCTGATGCTGTGGGTGATACCGACGATGAGCTATTCAGCGATGAGTTTGACTCGGATTCAAGTGAAAAGAGCCATGAAACTCGAAAAAATAGCAGATGGTTCAAGAAATTCTTTGAGATCTTGGATAGTTTAACTGTTGATGAGATTAATGATCCTGTTAGGCAGTGGCACTGTCCTGCATGTCAAGGGGGTCCTGGTTCCATTGACTGGTACCGAGGCCTGCAGCCCCTGATGACACATGCCAAAACAAAGGGATCAAAAAGGGTAATGCTCCATAGAGAGCTTGCAGAGCTTTTGGATGAAGAGTTGAGGAGGAAGGGAACTACAGTTATACCAGCTGGTGAAGCTTTTGGTAAATGGAAAGGTTTAAAAGATGAGGAAAAGGATCATGAAATCGTCTGGCCTCCTATGATTGTCATCATGAACACTAAACTTGAGCAGGATGACAATGACAAGTGGATTGGCATGGGAAATCAGGAGCTTCTTGAGTATTTCAGCCCTTATTCTGCTGCGAGAGCTCGACACTCATATGGTCCACAAGGACACCGTGGGATGAGCATTTTGATCTTTGAGGCCTCTGCAAGGGGTTATTTAGAGGCTGAGCGTCTGCACAAGCATTTTATAGAGCAAGGAACTGACAGAGATGCATGGGACCGTTGTCGTGTCTTATTTCAGTCTGGTGGGAAGCGACAGCTCTATGGGTACATGGCAGTGAAAGAAGACTTGGACATTTTTAACCAGCATTCTCAAGGTAAATCTAGGCTGAAATTTGAGATGAGATCGTACCAGGAGATGGTCGTGAACCAAATCAGGCAAATGAGTGAGGACAACCAACAGCTTATGTGGTTTAAGAACAGGGTTGCTAAGGAACAGAGGCATGCAAAAGCTCTTGAGGAATCTCTTGGTATAGTGAGTGAAAAACTCAGGAAGACGACGGAGGAAAATCGCATCGTAAGACAGAGGACCAAATTGCAGCACAAAGAGAACCAGGAAGAGATGTATCTGCAAGAACAATTTTTCAAAGACCAGATCAAGATAATTCATGAATCAAGGGATGCAAAGGAAGAAAATTTTGAGAGGCTGCAGCAGGAGGAACGTGACAAGGTGAAGCACTCATATCTCAACCCTTCAAATGCCGAGGAACAAAAATACAGGTCGGAGGAAATTGAAAACTTCATCAAGTCTCAACAGAAAGAGATGGAAGAATTTGTGGCAGAGCGGGACATGCTGATGAAAGCTCATGATGACGATAAAGCTGCAATGAAGCGGAGGCATTGGGAGGAAGAAGTGGAACTGGAGAAGGATTTTGATGCCAAATTAACCCAGCTCATGGAGAAGTATTCCCCGCATCTCCCTGAAGAAATTTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005655 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009791 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010050 GO:0010166 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0012505 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0030677 GO:0030681 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0098542 GO:0098586 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1902555 GO:1905348 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

XS zf-XS

Protein Analysis

724

Amino Acids

83.0

Weight (kDa)

6.21

Isoelectric Point (pI)

50.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-XS	PF03470	324 - 362	9.2e-09	XS zinc finger domain
XS	PF03468	395 - 508	2e-33	XS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002538)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23570 AT5G23570 AT5G23570 AT5G23570
fragaria_vesca	FvH4_1g25920 FvH4_5g23140 FvH4_5g23140
malus_domestica	MD03G1212700.v1.1 MD03G1233800.v1.1 MD06G1181900.v1.1 MD14G1187800.v1.1
prunus_persica	Prupe.4G288400_v2.0.a1 Prupe.4G288400_v2.0.a1 Prupe.4G288400_v2.0.a1 Prupe.4G289100_v2.0.a1 Prupe.5G027600_v2.0.a1 Prupe.5G027600_v2.0.a1
pyrus_communis	pycom03g16150 pycom03g18030
rosa_chinensis	RchiOBHm_Chr3g0485061 RchiOBHm_Chr7g0212021
rosa_laevigata	RLG00000002944 RLG00000023171
rosa_multiflora	Rmu_sc0002283.1_g000007 Rmu_sc0006040.1_g000012 Rmu_sc0014812.1_g000006
rosa_roxburghii	Rroxscaffold_3G00247180 Rroxscaffold_6G00397210
rosa_rugosa	Rorug03G0215900 Rorug03G0216000 Rorug03G0216100 Rorug07G0130300
rosa_samantha	Rh3AG266000 Rh3BG301600 Rh3CG299900 Rh3DG295700 Rh7AG263100 Rh7BG257100 Rh7CG279700 Rh7DG269800
rosa_wichuraiana	Rw7G022450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1008
AccB1I	GGYRCC	2 cut(s)	530, 1008
AccB7I	CCANNNNNTGG	4 cut(s)	233, 1005, 1591, 2128
AccBSI	CCGCTC	2 cut(s)	128, 2017
AccII	CGCG	2 cut(s)	14, 194
AclWI	GGATC	3 cut(s)	944, 1060, 1191
AcsI	RAATTY	7 cut(s)	280, 454, 905, 1565, 1867, 2003, 2160
AcuI	CTGAAG	1 cut(s)	10
AfaI	GTAC	5 cut(s)	17, 64, 1010, 1502, 1583
AfiI	CCNNNNNNNGG	7 cut(s)	233, 364, 664, 1005, 1380, 1591, 2128
AflIII	ACRYGT	1 cut(s)	646
AgsI	TTSAA	8 cut(s)	44, 286, 326, 858, 901, 1819, 1929, 1967
AhdI	GACNNNNNGTC	1 cut(s)	44
AjnI	CCWGG	7 cut(s)	357, 369, 398, 611, 991, 1584, 1785
AjuI	GAANNNNNNNTTGG	2 cut(s)	1505, 1537
Alw21I	GWGCWC	1 cut(s)	1318
Alw26I	GTCTC	2 cut(s)	10, 1986
AlwI	GGATC	3 cut(s)	944, 1060, 1191
AlwNI	CAGNNNCTG	1 cut(s)	1027
AoxI	GGCC	6 cut(s)	366, 545, 636, 1015, 1199, 1371
ApoI	RAATTY	7 cut(s)	280, 454, 905, 1565, 1867, 2003, 2160
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AseI	ATTAAT	1 cut(s)	945
Asp718I	GGTACC	1 cut(s)	1008
AspLEI	GCGC	1 cut(s)	123
AspS9I	GGNCC	8 cut(s)	367, 446, 637, 667, 989, 1331, 1450, 1761
AsuC2I	CCSGG	1 cut(s)	118
AsuHPI	GGTGA	5 cut(s)	62, 95, 824, 1151, 1915
AsuII	TTCGAA	1 cut(s)	2165
AvaII	GGWCC	6 cut(s)	446, 667, 989, 1331, 1450, 1761
BaeGI	GKGCMC	1 cut(s)	478
BanI	GGYRCC	2 cut(s)	530, 1008
BanII	GRGCYC	2 cut(s)	365, 1318
BarI	GAAGNNNNNNTAC	2 cut(s)	8, 40
BbsI	GAAGAC	3 cut(s)	597, 1524, 1733
Bbv12I	GWGCWC	1 cut(s)	1318
BccI	CCATC	5 cut(s)	371, 669, 888, 1585, 1990
BcgI	CGANNNNNNTGC	2 cut(s)	2036, 2070
BciT130I	CCWGG	7 cut(s)	359, 371, 400, 613, 993, 1586, 1787
BcnI	CCSGG	1 cut(s)	118
BcoDI	GTCTC	2 cut(s)	10, 1986
BfaI	CTAG	3 cut(s)	252, 690, 1557
BfmI	CTRYAG	5 cut(s)	215, 599, 1019, 1122, 1880
BglII	AGATCT	1 cut(s)	915
BlpI	GCTNAGC	1 cut(s)	1398
Bme1390I	CCNGG	8 cut(s)	118, 359, 371, 400, 613, 993, 1586, 1787
Bme18I	GGWCC	6 cut(s)	446, 667, 989, 1331, 1450, 1761
BmeRI	GACNNNNNGTC	1 cut(s)	44
BmgT120I	GGNCC	8 cut(s)	367, 446, 637, 667, 989, 1331, 1450, 1761
BmiI	GGNNCC	8 cut(s)	184, 447, 532, 639, 990, 997, 1010, 1451
BmrFI	CCNGG	8 cut(s)	118, 359, 371, 400, 613, 993, 1586, 1787
BmsI	GCATC	7 cut(s)	475, 793, 1432, 1755, 1843, 2098, 2155
BoxI	GACNNNNGTC	1 cut(s)	1455
BpiI	GAAGAC	3 cut(s)	597, 1524, 1733
BplI	GAGNNNNNCTC	2 cut(s)	833, 865
BpmI	CTGGAG	1 cut(s)	2114
Bpu10I	CCTNAGC	1 cut(s)	1662
Bpu1102I	GCTNAGC	1 cut(s)	1398
Bpu14I	TTCGAA	1 cut(s)	2165
BpuEI	CTTGAG	4 cut(s)	1253, 1304, 1530, 1709
BpuMI	CCSGG	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	1214
BsaI	GGTCTC	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	7 cut(s)	233, 364, 664, 1005, 1380, 1591, 2128
Bse1I	ACTGG	5 cut(s)	497, 669, 686, 1010, 2097
Bse3DI	GCAATG	2 cut(s)	760, 2064
Bse8I	GATNNNNATC	1 cut(s)	1214
BseBI	CCWGG	7 cut(s)	359, 371, 400, 613, 993, 1586, 1787
BseGI	GGATG	7 cut(s)	261, 379, 680, 1102, 1246, 1356, 1858
BseJI	GATNNNNATC	1 cut(s)	1214
BseLI	CCNNNNNNNGG	7 cut(s)	233, 364, 664, 1005, 1380, 1591, 2128
BseMI	GCAATG	2 cut(s)	760, 2064
BseMII	CTCAG	4 cut(s)	464, 503, 1389, 1735
BseNI	ACTGG	5 cut(s)	497, 669, 686, 1010, 2097
BseRI	GAGGAG	1 cut(s)	1123
BseSI	GKGCMC	1 cut(s)	478
BseYI	CCCAGC	2 cut(s)	160, 2121
BsgI	GTGCAG	3 cut(s)	140, 161, 1391
Bsh1236I	CGCG	2 cut(s)	14, 194
BshFI	GGCC	6 cut(s)	368, 547, 638, 1017, 1201, 1373
BshNI	GGYRCC	2 cut(s)	530, 1008
BsiHKAI	GWGCWC	1 cut(s)	1318
BsiSI	CCGG	2 cut(s)	118, 534
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	2 cut(s)	1463, 2033
BslI	CCNNNNNNNGG	7 cut(s)	233, 364, 664, 1005, 1380, 1591, 2128
BsmAI	GTCTC	2 cut(s)	10, 1986
BsmFI	GGGAC	2 cut(s)	1463, 2033
BsmI	GAATGC	1 cut(s)	1540
BsnI	GGCC	6 cut(s)	368, 547, 638, 1017, 1201, 1373
Bso31I	GGTCTC	1 cut(s)	10
Bsp119I	TTCGAA	1 cut(s)	2165
Bsp1286I	GDGCHC	3 cut(s)	365, 478, 1318
Bsp143I	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
Bsp1720I	GCTNAGC	1 cut(s)	1398
Bsp19I	CCATGG	1 cut(s)	670
BspANI	GGCC	6 cut(s)	368, 547, 638, 1017, 1201, 1373
BspCNI	CTCAG	4 cut(s)	463, 502, 1390, 1734
BspFNI	CGCG	2 cut(s)	14, 194
BspHI	TCATGA	4 cut(s)	1186, 1218, 1840, 2038
BspLI	GGNNCC	8 cut(s)	184, 447, 532, 639, 990, 997, 1010, 1451
BspMAI	CTGCAG	4 cut(s)	219, 603, 1023, 1884
BspPI	GGATC	3 cut(s)	944, 1060, 1191
BspT104I	TTCGAA	1 cut(s)	2165
BspT107I	GGYRCC	2 cut(s)	530, 1008
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	2 cut(s)	128, 2017
BsrDI	GCAATG	2 cut(s)	760, 2064
BsrI	ACTGG	5 cut(s)	497, 669, 686, 1010, 2097
BssMI	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
BssT1I	CCWWGG	2 cut(s)	670, 711
Bst2UI	CCWGG	7 cut(s)	359, 371, 400, 613, 993, 1586, 1787
Bst4CI	ACNGT	6 cut(s)	330, 934, 971, 1126, 1346, 1454
Bst6I	CTCTTC	3 cut(s)	577, 1095, 1785
BstBI	TTCGAA	1 cut(s)	2165
BstC8I	GCNNGC	5 cut(s)	166, 170, 1019, 1083, 1677
BstDEI	CTNAG	5 cut(s)	450, 489, 1398, 1662, 1721
BstDSI	CCRYGG	3 cut(s)	670, 730, 1345
BstENI	CCTNNNNNAGG	1 cut(s)	1378
BstF5I	GGATG	7 cut(s)	261, 379, 680, 1102, 1246, 1356, 1858
BstFNI	CGCG	2 cut(s)	14, 194
BstHHI	GCGC	1 cut(s)	123
BstKTI	GATC	7 cut(s)	918, 952, 1055, 1186, 1365, 1580, 1830
BstMAI	GTCTC	2 cut(s)	10, 1986
BstMBI	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
BstNI	CCWGG	7 cut(s)	359, 371, 400, 613, 993, 1586, 1787
BstNSI	RCATGY	5 cut(s)	650, 981, 1040, 1679, 2026
BstPAI	GACNNNNGTC	1 cut(s)	1455
BstSCI	CCNGG	8 cut(s)	116, 357, 369, 398, 611, 991, 1584, 1785
BstSFI	CTRYAG	5 cut(s)	215, 599, 1019, 1122, 1880
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	2 cut(s)	14, 194
BstV2I	GAAGAC	3 cut(s)	597, 1524, 1733
BstX2I	RGATCY	1 cut(s)	915
BstXI	CCANNNNNNTGG	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	915
BsuRI	GGCC	6 cut(s)	368, 547, 638, 1017, 1201, 1373
BtgI	CCRYGG	3 cut(s)	670, 730, 1345
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	7 cut(s)	261, 379, 680, 1102, 1246, 1356, 1858
BtsI	GCAGTG	3 cut(s)	433, 968, 1515
BtsIMutI	CAGTG	5 cut(s)	433, 662, 967, 968, 1515
Cac8I	GCNNGC	5 cut(s)	166, 170, 1019, 1083, 1677
CaiI	CAGNNNCTG	1 cut(s)	1027
CciI	TCATGA	4 cut(s)	1186, 1218, 1840, 2038
CfoI	GCGC	1 cut(s)	123
Cfr13I	GGNCC	8 cut(s)	367, 446, 637, 667, 989, 1331, 1450, 1761
CseI	GACGC	1 cut(s)	1391
Csp6I	GTAC	5 cut(s)	16, 63, 1009, 1501, 1582
CviQI	GTAC	5 cut(s)	16, 63, 1009, 1501, 1582
DdeI	CTNAG	5 cut(s)	450, 489, 1398, 1662, 1721
DpnI	GATC	7 cut(s)	917, 951, 1054, 1185, 1364, 1579, 1829
DpnII	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
DraI	TTTAAA	1 cut(s)	1167
DriI	GACNNNNNGTC	1 cut(s)	44
Eam1104I	CTCTTC	3 cut(s)	577, 1095, 1785
Eam1105I	GACNNNNNGTC	1 cut(s)	44
EarI	CTCTTC	3 cut(s)	577, 1095, 1785
Ecl136II	GAGCTC	1 cut(s)	1316
Eco130I	CCWWGG	2 cut(s)	670, 711
Eco147I	AGGCCT	2 cut(s)	1017, 1373
Eco24I	GRGCYC	2 cut(s)	365, 1318
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	6 cut(s)	446, 667, 989, 1331, 1450, 1761
Eco53kI	GAGCTC	1 cut(s)	1316
Eco57I	CTGAAG	1 cut(s)	10
EcoICRI	GAGCTC	1 cut(s)	1316
EcoNI	CCTNNNNNAGG	1 cut(s)	1378
EcoO109I	RGGNCCY	2 cut(s)	446, 989
EcoRI	GAATTC	1 cut(s)	454
EcoRII	CCWGG	7 cut(s)	357, 369, 398, 611, 991, 1584, 1785
EcoT14I	CCWWGG	2 cut(s)	670, 711
EcoT22I	ATGCAT	1 cut(s)	1447
EcoT38I	GRGCYC	2 cut(s)	365, 1318
ErhI	CCWWGG	2 cut(s)	670, 711
FalI	AAGNNNNNCTT	4 cut(s)	36, 68, 893, 925
FaqI	GGGAC	2 cut(s)	1463, 2033
FauI	CCCGC	3 cut(s)	571, 2010, 2151
FauNDI	CATATG	1 cut(s)	1327
FokI	GGATG	7 cut(s)	268, 386, 687, 1109, 1253, 1363, 1865
FriOI	GRGCYC	2 cut(s)	365, 1318
FspBI	CTAG	3 cut(s)	252, 690, 1557
GlaI	GCGC	1 cut(s)	122
GsaI	CCCAGC	2 cut(s)	164, 2125
GsuI	CTGGAG	1 cut(s)	2114
HaeIII	GGCC	6 cut(s)	368, 547, 638, 1017, 1201, 1373
HapII	CCGG	2 cut(s)	118, 534
HgaI	GACGC	1 cut(s)	1391
HhaI	GCGC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	121
HinP1I	GCGC	1 cut(s)	121
HincII	GTYRAC	2 cut(s)	49, 333
HindII	GTYRAC	2 cut(s)	49, 333
HindIII	AAGCTT	2 cut(s)	468, 1143
HinfI	GANTC	6 cut(s)	334, 652, 848, 854, 1694, 1844
HpaII	CCGG	2 cut(s)	118, 534
HphI	GGTGA	5 cut(s)	62, 95, 824, 1151, 1915
Hpy166II	GTNNAC	5 cut(s)	49, 333, 730, 1334, 1600
Hpy188I	TCNGA	8 cut(s)	453, 492, 562, 622, 721, 802, 853, 1957
Hpy8I	GTNNAC	5 cut(s)	49, 333, 730, 1334, 1600
Hpy99I	CGWCG	2 cut(s)	824, 1735
HpyAV	CCTTC	6 cut(s)	34, 519, 558, 1108, 1935, 2092
HpyCH4III	ACNGT	6 cut(s)	330, 934, 971, 1126, 1346, 1454
HpyCH4IV	ACGT	3 cut(s)	65, 351, 1894
HpyF3I	CTNAG	5 cut(s)	450, 489, 1398, 1662, 1721
HpySE526I	ACGT	3 cut(s)	65, 351, 1894
HspAI	GCGC	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	1012
Kzo9I	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
LmnI	GCTCC	3 cut(s)	182, 1074, 1276
LweI	GCATC	7 cut(s)	475, 793, 1432, 1755, 1843, 2098, 2155
MaeI	CTAG	3 cut(s)	252, 690, 1557
MaeII	ACGT	3 cut(s)	65, 351, 1894
MaeIII	GTNAC	2 cut(s)	700, 1895
MalI	GATC	7 cut(s)	917, 951, 1054, 1185, 1364, 1579, 1829
MbiI	CCGCTC	2 cut(s)	128, 2017
MboI	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
MflI	RGATCY	1 cut(s)	915
MhlI	GDGCHC	3 cut(s)	365, 478, 1318
MlyI	GAGTC	2 cut(s)	328, 842
MmeI	TCCRAC	1 cut(s)	1935
Mph1103I	ATGCAT	1 cut(s)	1447
MseI	TTAA	6 cut(s)	929, 945, 1166, 1533, 1647, 2117
MslI	CAYNNNNRTG	3 cut(s)	1326, 1508, 2027
MspA1I	CMGCKG	4 cut(s)	175, 578, 776, 1136
MspI	CCGG	2 cut(s)	118, 534
MspR9I	CCNGG	8 cut(s)	118, 359, 371, 400, 613, 993, 1586, 1787
Mva1269I	GAATGC	1 cut(s)	1540
MvaI	CCWGG	7 cut(s)	359, 371, 400, 613, 993, 1586, 1787
MvnI	CGCG	2 cut(s)	14, 194
NciI	CCSGG	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	670
NdeI	CATATG	1 cut(s)	1327
NdeII	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
NlaIV	GGNNCC	8 cut(s)	184, 447, 532, 639, 990, 997, 1010, 1451
NmeAIII	GCCGAG	2 cut(s)	344, 1960
NmuCI	GTSAC	1 cut(s)	1895
NsiI	ATGCAT	1 cut(s)	1447
NspI	RCATGY	5 cut(s)	650, 981, 1040, 1679, 2026
NspV	TTCGAA	1 cut(s)	2165
PaeI	GCATGC	1 cut(s)	1679
PagI	TCATGA	4 cut(s)	1186, 1218, 1840, 2038
PceI	AGGCCT	2 cut(s)	1017, 1373
PciI	ACATGT	1 cut(s)	646
PctI	GAATGC	1 cut(s)	1540
PfeI	GAWTC	4 cut(s)	652, 854, 1694, 1844
Pfl23II	CGTACG	1 cut(s)	15
PflMI	CCANNNNNTGG	4 cut(s)	233, 1005, 1591, 2128
PleI	GAGTC	2 cut(s)	328, 842
PpsI	GAGTC	2 cut(s)	328, 842
PpuMI	RGGWCCY	2 cut(s)	446, 989
PscI	ACATGT	1 cut(s)	646
PshAI	GACNNNNGTC	1 cut(s)	1455
PshBI	ATTAAT	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	1318
Psp5II	RGGWCCY	2 cut(s)	446, 989
Psp6I	CCWGG	7 cut(s)	357, 369, 398, 611, 991, 1584, 1785
PspFI	CCCAGC	2 cut(s)	160, 2121
PspGI	CCWGG	7 cut(s)	357, 369, 398, 611, 991, 1584, 1785
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	8 cut(s)	184, 447, 532, 639, 990, 997, 1010, 1451
PspPI	GGNCC	8 cut(s)	367, 446, 637, 667, 989, 1331, 1450, 1761
PspPPI	RGGWCCY	2 cut(s)	446, 989
PstI	CTGCAG	4 cut(s)	219, 603, 1023, 1884
PstNI	CAGNNNCTG	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	915
PvuII	CAGCTG	2 cut(s)	175, 1136
RsaI	GTAC	5 cut(s)	17, 64, 1010, 1502, 1583
RsaNI	GTAC	5 cut(s)	16, 63, 1009, 1501, 1582
RseI	CAYNNNNRTG	3 cut(s)	1326, 1508, 2027
SacI	GAGCTC	1 cut(s)	1318
SaqAI	TTAA	6 cut(s)	929, 945, 1166, 1533, 1647, 2117
Sau3AI	GATC	7 cut(s)	915, 949, 1052, 1183, 1362, 1577, 1827
Sau96I	GGNCC	8 cut(s)	367, 446, 637, 667, 989, 1331, 1450, 1761
SchI	GAGTC	2 cut(s)	328, 842
ScrFI	CCNGG	8 cut(s)	118, 359, 371, 400, 613, 993, 1586, 1787
SduI	GDGCHC	3 cut(s)	365, 478, 1318
SfaNI	GCATC	7 cut(s)	475, 793, 1432, 1755, 1843, 2098, 2155
SfcI	CTRYAG	5 cut(s)	215, 599, 1019, 1122, 1880
SfuI	TTCGAA	1 cut(s)	2165
SinI	GGWCC	6 cut(s)	446, 667, 989, 1331, 1450, 1761
SmiMI	CAYNNNNRTG	3 cut(s)	1326, 1508, 2027
SmlI	CTYRAG	4 cut(s)	1232, 1283, 1545, 1688
SmoI	CTYRAG	4 cut(s)	1232, 1283, 1545, 1688
SphI	GCATGC	1 cut(s)	1679
SseBI	AGGCCT	2 cut(s)	1017, 1373
SspMI	CTAG	3 cut(s)	252, 690, 1557
SstI	GAGCTC	1 cut(s)	1318
StuI	AGGCCT	2 cut(s)	1017, 1373
StyD4I	CCNGG	8 cut(s)	116, 357, 369, 398, 611, 991, 1584, 1785
StyI	CCWWGG	2 cut(s)	670, 711
TaaI	ACNGT	6 cut(s)	330, 934, 971, 1126, 1346, 1454
TaiI	ACGT	3 cut(s)	68, 354, 1897
TaqI	TCGA	4 cut(s)	407, 880, 1318, 2165
TauI	GCSGC	2 cut(s)	761, 773
TfiI	GAWTC	4 cut(s)	652, 854, 1694, 1844
Tru1I	TTAA	6 cut(s)	929, 945, 1166, 1533, 1647, 2117
Tru9I	TTAA	6 cut(s)	929, 945, 1166, 1533, 1647, 2117
TscAI	CASTG	5 cut(s)	433, 669, 968, 974, 1515
TseFI	GTSAC	1 cut(s)	1895
Tsp45I	GTSAC	1 cut(s)	1895
TspDTI	ATGAA	9 cut(s)	888, 1113, 1203, 1235, 1829, 1857, 1963, 2045, 2075
TspGWI	ACGGA	3 cut(s)	195, 747, 1748
TspRI	CASTG	5 cut(s)	433, 669, 968, 974, 1515
Van91I	CCANNNNNTGG	4 cut(s)	233, 1005, 1591, 2128
VpaK11BI	GGWCC	6 cut(s)	446, 667, 989, 1331, 1450, 1761
VspI	ATTAAT	1 cut(s)	945
XagI	CCTNNNNNAGG	1 cut(s)	1378
XapI	RAATTY	7 cut(s)	280, 454, 905, 1565, 1867, 2003, 2160
XbaI	TCTAGA	1 cut(s)	689
XceI	RCATGY	5 cut(s)	650, 981, 1040, 1679, 2026
XspI	CTAG	3 cut(s)	252, 690, 1557
Zsp2I	ATGCAT	1 cut(s)	1447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.