No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g24700 FvH4_5g24710 |
| rosa_chinensis | RchiOBHm_Chr5g0018131 |
| rosa_roxburghii | Rroxscaffold_1G00059670 |
| rosa_samantha | Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200 |
| rosa_wichuraiana | Rw5G011490 Rw5G011630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 241 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 93, 136 |
| AflIII | ACRYGT | 1 cut(s) | 223 |
| AgsI | TTSAA | 3 cut(s) | 59, 116, 217 |
| AjnI | CCWGG | 3 cut(s) | 129, 135, 205 |
| AluBI | AGCT | 4 cut(s) | 25, 36, 54, 161 |
| AluI | AGCT | 4 cut(s) | 25, 36, 54, 161 |
| Alw21I | GWGCWC | 1 cut(s) | 129 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 63 |
| AspS9I | GGNCC | 1 cut(s) | 133 |
| AvaII | GGWCC | 1 cut(s) | 133 |
| Bbv12I | GWGCWC | 1 cut(s) | 129 |
| BccI | CCATC | 1 cut(s) | 224 |
| BciT130I | CCWGG | 3 cut(s) | 131, 137, 207 |
| BfaI | CTAG | 3 cut(s) | 68, 270, 323 |
| BlpI | GCTNAGC | 1 cut(s) | 32 |
| Bme1390I | CCNGG | 3 cut(s) | 131, 137, 207 |
| Bme18I | GGWCC | 1 cut(s) | 133 |
| BmgT120I | GGNCC | 1 cut(s) | 133 |
| BmiI | GGNNCC | 2 cut(s) | 85, 211 |
| BmrFI | CCNGG | 3 cut(s) | 131, 137, 207 |
| BmsI | GCATC | 1 cut(s) | 331 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 32 |
| BsaJI | CCNNGG | 2 cut(s) | 150, 205 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 131, 161 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 93, 136 |
| Bse1I | ACTGG | 1 cut(s) | 98 |
| BseBI | CCWGG | 3 cut(s) | 131, 137, 207 |
| BseDI | CCNNGG | 2 cut(s) | 150, 205 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 93, 136 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 98 |
| BseYI | CCCAGC | 2 cut(s) | 50, 166 |
| BsiHKAI | GWGCWC | 1 cut(s) | 129 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 93, 136 |
| Bsp1286I | GDGCHC | 1 cut(s) | 129 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 32 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspLI | GGNNCC | 2 cut(s) | 85, 211 |
| BsrI | ACTGG | 1 cut(s) | 98 |
| BssECI | CCNNGG | 2 cut(s) | 150, 205 |
| BssNAI | GTATAC | 1 cut(s) | 242 |
| BssT1I | CCWWGG | 1 cut(s) | 150 |
| Bst1107I | GTATAC | 1 cut(s) | 242 |
| Bst2UI | CCWGG | 3 cut(s) | 131, 137, 207 |
| BstC8I | GCNNGC | 1 cut(s) | 38 |
| BstDEI | CTNAG | 4 cut(s) | 32, 88, 123, 188 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 134 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 37, 46 |
| BstNI | CCWGG | 3 cut(s) | 131, 137, 207 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSCI | CCNGG | 3 cut(s) | 129, 135, 205 |
| BstZ17I | GTATAC | 1 cut(s) | 242 |
| Cac8I | GCNNGC | 1 cut(s) | 38 |
| Cfr13I | GGNCC | 1 cut(s) | 133 |
| CviAII | CATG | 2 cut(s) | 224, 345 |
| CviJI | RGCY | 6 cut(s) | 25, 36, 54, 97, 161, 184 |
| CviKI_1 | RGCY | 6 cut(s) | 25, 36, 54, 97, 161, 184 |
| DdeI | CTNAG | 4 cut(s) | 32, 88, 123, 188 |
| Eco130I | CCWWGG | 1 cut(s) | 150 |
| Eco47I | GGWCC | 1 cut(s) | 133 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 134 |
| EcoRII | CCWGG | 3 cut(s) | 129, 135, 205 |
| EcoT14I | CCWWGG | 1 cut(s) | 150 |
| EcoT22I | ATGCAT | 1 cut(s) | 346 |
| ErhI | CCWWGG | 1 cut(s) | 150 |
| FaeI | CATG | 2 cut(s) | 227, 348 |
| FaiI | YATR | 6 cut(s) | 17, 225, 242, 247, 258, 346 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 93, 125 |
| FatI | CATG | 2 cut(s) | 223, 344 |
| FblI | GTMKAC | 1 cut(s) | 241 |
| FspBI | CTAG | 3 cut(s) | 68, 270, 323 |
| GsaI | CCCAGC | 2 cut(s) | 54, 170 |
| Hin1II | CATG | 2 cut(s) | 227, 348 |
| HindIII | AAGCTT | 1 cut(s) | 34 |
| HinfI | GANTC | 2 cut(s) | 146, 251 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 1 cut(s) | 124 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 323 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| HpyCH4V | TGCA | 2 cut(s) | 306, 344 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 37, 46 |
| HpyF3I | CTNAG | 4 cut(s) | 32, 88, 123, 188 |
| Hsp92II | CATG | 2 cut(s) | 227, 348 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 3 cut(s) | 68, 270, 323 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MboII | GAAGA | 1 cut(s) | 113 |
| MhlI | GDGCHC | 1 cut(s) | 129 |
| MlyI | GAGTC | 1 cut(s) | 140 |
| MnlI | CCTC | 2 cut(s) | 64, 212 |
| Mph1103I | ATGCAT | 1 cut(s) | 346 |
| MroXI | GAANNNNTTC | 1 cut(s) | 63 |
| MseI | TTAA | 1 cut(s) | 285 |
| MslI | CAYNNNNRTG | 1 cut(s) | 228 |
| MspR9I | CCNGG | 3 cut(s) | 131, 137, 207 |
| MvaI | CCWGG | 3 cut(s) | 131, 137, 207 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 37, 46 |
| NlaIII | CATG | 2 cut(s) | 227, 348 |
| NlaIV | GGNNCC | 2 cut(s) | 85, 211 |
| NsiI | ATGCAT | 1 cut(s) | 346 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PciI | ACATGT | 1 cut(s) | 223 |
| PdmI | GAANNNNTTC | 1 cut(s) | 63 |
| PfeI | GAWTC | 1 cut(s) | 251 |
| PleI | GAGTC | 1 cut(s) | 140 |
| PpsI | GAGTC | 1 cut(s) | 140 |
| PscI | ACATGT | 1 cut(s) | 223 |
| Psp6I | CCWGG | 3 cut(s) | 129, 135, 205 |
| PspFI | CCCAGC | 2 cut(s) | 50, 166 |
| PspGI | CCWGG | 3 cut(s) | 129, 135, 205 |
| PspN4I | GGNNCC | 2 cut(s) | 85, 211 |
| PspPI | GGNCC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 228 |
| SaqAI | TTAA | 1 cut(s) | 285 |
| Sau96I | GGNCC | 1 cut(s) | 133 |
| SchI | GAGTC | 1 cut(s) | 140 |
| ScrFI | CCNGG | 3 cut(s) | 131, 137, 207 |
| SduI | GDGCHC | 1 cut(s) | 129 |
| SetI | ASST | 9 cut(s) | 27, 38, 56, 85, 132, 163, 194, 215, 275 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SinI | GGWCC | 1 cut(s) | 133 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 228 |
| SspMI | CTAG | 3 cut(s) | 68, 270, 323 |
| StyD4I | CCNGG | 3 cut(s) | 129, 135, 205 |
| StyI | CCWWGG | 1 cut(s) | 150 |
| TfiI | GAWTC | 1 cut(s) | 251 |
| Tru1I | TTAA | 1 cut(s) | 285 |
| Tru9I | TTAA | 1 cut(s) | 285 |
| VpaK11BI | GGWCC | 1 cut(s) | 133 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 134 |
| XbaI | TCTAGA | 2 cut(s) | 67, 322 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XmiI | GTMKAC | 1 cut(s) | 241 |
| XmnI | GAANNNNTTC | 1 cut(s) | 63 |
| XspI | CTAG | 3 cut(s) | 68, 270, 323 |
| Zsp2I | ATGCAT | 1 cut(s) | 346 |