Rh5DG132200

RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
12959613 .. 12963998
4386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG132200.1

Sequence Viewer

Length: 1497 bp
ATGGCGTCAAGGGTCATATTTCTACCTCTCGACCTTGCTGTAAAGATACAACCCCTGTTGACTAAAATCTCAAAATTTGGGGGTAAGCTGGCTTCAGCTTCTTCTGTTCCTGAAGTGCAACTGTCTCAATATGTTCCTACACTTGAAAAGCTTGGTACTTTGAGGTTGCTCCAGCAGGTGTCTCGGGTGTATCAGTCAATGAAGATTGAACATTTATCTCGGATGATCCCATTTTATGACTTTTCTGTTGTAGAGAAGATATATGTGGATGCTGTTAAACATAACTTCATAGCTATGAAAGTCGACCATATGAAGGGTGTTATGATGTTTGGTAACTTGGCAAAAGCTAATGAGGGAGAGGGTCCAGAAATTCTAAGAAGTGCGCATGAAGGCGGTTCAAGTGGTCATGCCGAGTCATTAGCTGCAACACTAGCTGAACATCAGCAGCACTTGGTTAGCTTTCAGGTTCTCATTAATCAACTGAAGGAAGTTGCTCCAGCAATACAAAAGTCAATATCAAAATGTACAGATAAAGTAGATAGCATTTCCTCTAATCTGCCTCCAATGACTAAGCATCCTGGCCAGATGGAGAAGGTTACTTCAGTCTTTGGTTGTGAGCAAGCGGCTACAAAATTTGCTAAAGGTTATATTGAAAAGATCCATGTTCGTAGTTTGTGGGTGCTTTGTCGATGTATGTCTCTAGATGAATGTGAGCTGCCGATTGGACAAGATAGCAGCTTTATGTCCTTGCTAAAAAGGGGTACTGAAGAAAGCAATATACGTGGTGAAGCGTATATTGGCAGTAGCACACTGGAATCAATAAGACTTCTCGTCACTATTATTGGTACCACCCTGACTTCTGGTTTGATCAAGATGATGTTATGCCTAACTTTGGAGAACATTGAGTGGAGGATGCGAAAAATGAGCAATGCTGAGGCTTTACTTAGGTTTCTGAATGAGTCTTTTGAGTGGGAAGAAAAATCAGATGAGGGAGTGGTTTACAATCGAATGATTTGGTCTCTAGAACAGGTGCATAATGAGATGGGTTTGCTTCCAACTTTAGGGCCAAGGGAACTGGGAACCATTGCACAAAGTGATGGGCGTAAAATAAATCTGGATGACATAAATCAACGGCATGAATTTATCGATAGATTTCTTGCTGATACAGTCTCCATTGCTACAAGACTTGAGCTTCTCTTAACCTTCCCCTTGCTGCCTAATTGGCAGAGTTTTTTACATGCAACAAATGGTAATTCTTTGGATTGGCTTGAAGGGAAGATTAAAGTAATGTGTGCTCAAGTAGAAGTCATTAACTCTAAAGCAGATGCATTTCTTGGAAAATATGAGGGACAAAGCATTGAAATTCTCAACTTCCAGAGGAAAATGACAGCGCCCATTGAGAATATGTGGCAAAATTTGGGAGCTTTACTCTGGACTTCTAGAAATATGATGCGTGGAGATGGTCAAGAATATGAGGATGCAAAAAATGAACAATGA

Protein Analysis

498

Amino Acids

56.03

Weight (kDa)

6.11

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 40 - 110 1e-06 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0017309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 166
Acc16I TGCGCA 1 cut(s) 384
Acc36I ACCTGC 1 cut(s) 166
Acc65I GGTACC 1 cut(s) 845
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 303
AciI CCGC 2 cut(s) 393, 623
AclWI GGATC 2 cut(s) 220, 652
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 6 cut(s) 74, 369, 632, 1139, 1362, 1414
AcuI CTGAAG 5 cut(s) 78, 132, 503, 585, 786
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 1094
AfaI GTAC 4 cut(s) 157, 526, 763, 847
AfiI CCNNNNNNNGG 3 cut(s) 313, 892, 1061
AgsI TTSAA 6 cut(s) 146, 209, 399, 653, 1271, 1361
AhdI GACNNNNNGTC 1 cut(s) 830
AjnI CCWGG 1 cut(s) 577
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
Alw21I GWGCWC 1 cut(s) 1297
Alw26I GTCTC 5 cut(s) 129, 186, 702, 1023, 1174
AlwI GGATC 2 cut(s) 220, 652
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 2 cut(s) 580, 1064
ApeKI GCWGC 5 cut(s) 422, 445, 715, 735, 1213
ApoI RAATTY 6 cut(s) 74, 369, 632, 1139, 1362, 1414
ArsI GACNNNNNNTTYG 2 cut(s) 847, 879
AseI ATTAAT 1 cut(s) 474
Asp718I GGTACC 1 cut(s) 845
AspLEI GCGC 2 cut(s) 385, 1393
AspS9I GGNCC 2 cut(s) 362, 1064
AsuHPI GGTGA 1 cut(s) 797
AvaI CYCGRG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 362
BalI TGGCCA 1 cut(s) 582
BanI GGYRCC 1 cut(s) 845
BarI GAAGNNNNNNTAC 2 cut(s) 76, 108
Bbv12I GWGCWC 1 cut(s) 1297
BbvCI CCTCAGC 1 cut(s) 933
BbvI GCAGC 5 cut(s) 409, 457, 702, 747, 1200
BccI CCATC 4 cut(s) 580, 1036, 1091, 1454
BceAI ACGGC 1 cut(s) 1148
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BciT130I CCWGG 1 cut(s) 579
BclI TGATCA 1 cut(s) 867
BcoDI GTCTC 5 cut(s) 129, 186, 702, 1023, 1174
BfaI CTAG 4 cut(s) 431, 701, 1022, 1440
BfoI RGCGCY 1 cut(s) 1394
BfuAI ACCTGC 1 cut(s) 166
BglI GCCNNNNNGGC 1 cut(s) 1222
BisI GCNGC 6 cut(s) 423, 446, 624, 716, 736, 1214
BlsI GCNGC 6 cut(s) 424, 447, 625, 717, 737, 1215
Bme1390I CCNGG 1 cut(s) 579
Bme18I GGWCC 1 cut(s) 362
BmeRI GACNNNNNGTC 1 cut(s) 830
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 362, 1064
BmiI GGNNCC 3 cut(s) 363, 847, 1081
BmrFI CCNGG 1 cut(s) 579
BmrI ACTGGG 1 cut(s) 1085
BmsI GCATC 6 cut(s) 259, 583, 903, 1315, 1440, 1468
BmuI ACTGGG 1 cut(s) 1085
BplI GAGNNNNNCTC 2 cut(s) 1413, 1445
BpmI CTGGAG 2 cut(s) 155, 480
Bpu10I CCTNAGC 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 1208, 1281
Bsa29I ATCGAT 1 cut(s) 1146
BsaAI YACGTR 1 cut(s) 782
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 1023
BsaJI CCNNGG 1 cut(s) 1067
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 892, 1061
Bse1I ACTGG 2 cut(s) 816, 1080
Bse3DI GCAATG 3 cut(s) 934, 1083, 1173
BseBI CCWGG 1 cut(s) 579
BseCI ATCGAT 1 cut(s) 1146
BseDI CCNNGG 1 cut(s) 1067
BseGI GGATG 6 cut(s) 228, 274, 574, 918, 1123, 1483
BseLI CCNNNNNNNGG 3 cut(s) 313, 892, 1061
BseMI GCAATG 3 cut(s) 934, 1083, 1173
BseMII CTCAG 1 cut(s) 924
BseNI ACTGG 2 cut(s) 816, 1080
BseXI GCAGC 5 cut(s) 409, 457, 702, 747, 1200
BshFI GGCC 2 cut(s) 582, 1066
BshNI GGYRCC 1 cut(s) 845
BshVI ATCGAT 1 cut(s) 1146
BsiHKAI GWGCWC 1 cut(s) 1297
BsiHKCI CYCGRG 1 cut(s) 183
BslFI GGGAC 1 cut(s) 1362
BslI CCNNNNNNNGG 3 cut(s) 313, 892, 1061
BsmAI GTCTC 5 cut(s) 129, 186, 702, 1023, 1174
BsmFI GGGAC 1 cut(s) 1362
BsnI GGCC 2 cut(s) 582, 1066
Bso31I GGTCTC 1 cut(s) 1023
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 1297
Bsp1407I TGTACA 1 cut(s) 524
Bsp143I GATC 3 cut(s) 225, 657, 867
BspACI CCGC 2 cut(s) 393, 623
BspANI GGCC 2 cut(s) 582, 1066
BspCNI CTCAG 1 cut(s) 925
BspDI ATCGAT 1 cut(s) 1146
BspLI GGNNCC 3 cut(s) 363, 847, 1081
BspMI ACCTGC 1 cut(s) 166
BspPI GGATC 2 cut(s) 220, 652
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 1023
BsrDI GCAATG 3 cut(s) 934, 1083, 1173
BsrGI TGTACA 1 cut(s) 524
BsrI ACTGG 2 cut(s) 816, 1080
BssECI CCNNGG 1 cut(s) 1067
BssMI GATC 3 cut(s) 225, 657, 867
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 1067
Bst2UI CCWGG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 123, 1168
BstACI GRCGYC 1 cut(s) 5
BstAUI TGTACA 1 cut(s) 524
BstBAI YACGTR 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 90, 621
BstDEI CTNAG 4 cut(s) 374, 570, 933, 944
BstF5I GGATG 6 cut(s) 228, 274, 574, 918, 1123, 1483
BstH2I RGCGCY 1 cut(s) 1394
BstHHI GCGC 2 cut(s) 385, 1393
BstKTI GATC 3 cut(s) 228, 660, 870
BstMAI GTCTC 5 cut(s) 129, 186, 702, 1023, 1174
BstMBI GATC 3 cut(s) 225, 657, 867
BstMWI GCNNNNNNNGC 2 cut(s) 431, 1222
BstNI CCWGG 1 cut(s) 579
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 1 cut(s) 577
BstV1I GCAGC 5 cut(s) 409, 457, 702, 747, 1200
BstX2I RGATCY 1 cut(s) 657
BstYI RGATCY 1 cut(s) 657
Bsu15I ATCGAT 1 cut(s) 1146
BsuRI GGCC 2 cut(s) 582, 1066
BsuTUI ATCGAT 1 cut(s) 1146
BtsCI GGATG 6 cut(s) 228, 274, 574, 918, 1123, 1483
BtsIMutI CAGTG 1 cut(s) 809
BveI ACCTGC 1 cut(s) 166
Cac8I GCNNGC 2 cut(s) 90, 621
CfoI GCGC 2 cut(s) 385, 1393
Cfr13I GGNCC 2 cut(s) 362, 1064
ClaI ATCGAT 1 cut(s) 1146
Csp6I GTAC 4 cut(s) 156, 525, 762, 846
CspCI CAANNNNNGTGG 2 cut(s) 763, 798
CviAII CATG 5 cut(s) 386, 407, 662, 1136, 1238
CviQI GTAC 4 cut(s) 156, 525, 762, 846
DdeI CTNAG 4 cut(s) 374, 570, 933, 944
DpnI GATC 3 cut(s) 227, 659, 869
DpnII GATC 3 cut(s) 225, 657, 867
DraIII CACNNNGTG 1 cut(s) 1094
DriI GACNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 1 cut(s) 580
Eam1105I GACNNNNNGTC 1 cut(s) 830
Eco130I CCWWGG 1 cut(s) 1067
Eco31I GGTCTC 1 cut(s) 1023
Eco47I GGWCC 1 cut(s) 362
Eco57I CTGAAG 5 cut(s) 78, 132, 503, 585, 786
Eco88I CYCGRG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 577
EcoT14I CCWWGG 1 cut(s) 1067
EcoT22I ATGCAT 1 cut(s) 1330
ErhI CCWWGG 1 cut(s) 1067
FaeI CATG 5 cut(s) 389, 410, 665, 1139, 1241
FaqI GGGAC 1 cut(s) 1362
FatI CATG 5 cut(s) 385, 406, 661, 1135, 1237
FauNDI CATATG 1 cut(s) 309
FbaI TGATCA 1 cut(s) 867
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 6 cut(s) 423, 446, 624, 716, 736, 1214
FokI GGATG 6 cut(s) 235, 281, 561, 925, 1130, 1490
Fsp4HI GCNGC 6 cut(s) 423, 446, 624, 716, 736, 1214
FspAI RTGCGCAY 1 cut(s) 384
FspBI CTAG 4 cut(s) 431, 701, 1022, 1440
FspI TGCGCA 1 cut(s) 384
GlaI GCGC 2 cut(s) 384, 1392
GluI GCNGC 6 cut(s) 423, 446, 624, 716, 736, 1214
GsuI CTGGAG 2 cut(s) 155, 480
HaeII RGCGCY 1 cut(s) 1394
HaeIII GGCC 2 cut(s) 582, 1066
HhaI GCGC 2 cut(s) 385, 1393
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 389, 410, 665, 1139, 1241
Hin6I GCGC 2 cut(s) 383, 1391
HinP1I GCGC 2 cut(s) 383, 1391
HincII GTYRAC 2 cut(s) 60, 304
HindII GTYRAC 2 cut(s) 60, 304
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 3 cut(s) 413, 815, 959
HphI GGTGA 1 cut(s) 797
Hpy166II GTNNAC 3 cut(s) 60, 304, 1000
Hpy188I TCNGA 3 cut(s) 222, 954, 985
Hpy8I GTNNAC 3 cut(s) 60, 304, 1000
HpyAV CCTTC 6 cut(s) 307, 383, 478, 586, 1213, 1265
HpyCH4III ACNGT 2 cut(s) 123, 1168
HpyCH4IV ACGT 1 cut(s) 781
HpyCH4V TGCA 7 cut(s) 118, 425, 1033, 1088, 1241, 1328, 1481
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 1222
HpyF3I CTNAG 4 cut(s) 374, 570, 933, 944
HpySE526I ACGT 1 cut(s) 781
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 389, 410, 665, 1139, 1241
HspAI GCGC 2 cut(s) 383, 1391
KpnI GGTACC 1 cut(s) 849
Ksp22I TGATCA 1 cut(s) 867
Kzo9I GATC 3 cut(s) 225, 657, 867
LmnI GCTCC 3 cut(s) 174, 499, 1421
Lsp1109I GCAGC 5 cut(s) 409, 457, 702, 747, 1200
LweI GCATC 6 cut(s) 259, 583, 903, 1315, 1440, 1468
MaeI CTAG 4 cut(s) 431, 701, 1022, 1440
MaeII ACGT 1 cut(s) 781
MaeIII GTNAC 3 cut(s) 332, 595, 832
MalI GATC 3 cut(s) 227, 659, 869
MboI GATC 3 cut(s) 225, 657, 867
MboII GAAGA 6 cut(s) 93, 214, 268, 779, 986, 1288
MflI RGATCY 1 cut(s) 657
MhlI GDGCHC 1 cut(s) 1297
MlsI TGGCCA 1 cut(s) 582
MluCI AATT 8 cut(s) 74, 369, 632, 1139, 1219, 1252, 1362, 1414
MluNI TGGCCA 1 cut(s) 582
MlyI GAGTC 2 cut(s) 422, 968
MmeI TCCRAC 1 cut(s) 1079
Mox20I TGGCCA 1 cut(s) 582
Mph1103I ATGCAT 1 cut(s) 1330
MscI TGGCCA 1 cut(s) 582
MseI TTAA 5 cut(s) 276, 474, 1199, 1281, 1311
MslI CAYNNNNRTG 1 cut(s) 293
Msp20I TGGCCA 1 cut(s) 582
MspR9I CCNGG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 431, 1222
NdeI CATATG 1 cut(s) 309
NdeII GATC 3 cut(s) 225, 657, 867
NlaIII CATG 5 cut(s) 389, 410, 665, 1139, 1241
NlaIV GGNNCC 3 cut(s) 363, 847, 1081
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 1 cut(s) 832
NsbI TGCGCA 1 cut(s) 384
NsiI ATGCAT 1 cut(s) 1330
NspI RCATGY 1 cut(s) 1241
PaqCI CACCTGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 815
PkrI GCNGC 6 cut(s) 424, 447, 625, 717, 737, 1215
PleI GAGTC 2 cut(s) 421, 967
PpsI GAGTC 2 cut(s) 421, 967
Ppu21I YACGTR 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 577
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 363, 847, 1081
PspPI GGNCC 2 cut(s) 362, 1064
PsuI RGATCY 1 cut(s) 657
RsaI GTAC 4 cut(s) 157, 526, 763, 847
RsaNI GTAC 4 cut(s) 156, 525, 762, 846
RseI CAYNNNNRTG 1 cut(s) 293
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 5 cut(s) 276, 474, 1199, 1281, 1311
SatI GCNGC 6 cut(s) 423, 446, 624, 716, 736, 1214
Sau3AI GATC 3 cut(s) 225, 657, 867
Sau96I GGNCC 2 cut(s) 362, 1064
SchI GAGTC 2 cut(s) 422, 968
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 1 cut(s) 1297
SfaNI GCATC 6 cut(s) 259, 583, 903, 1315, 1440, 1468
SinI GGWCC 1 cut(s) 362
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 2 cut(s) 1187, 1296
SmoI CTYRAG 2 cut(s) 1187, 1296
Sse9I AATT 8 cut(s) 74, 369, 632, 1139, 1219, 1252, 1362, 1414
SsiI CCGC 2 cut(s) 393, 623
SspMI CTAG 4 cut(s) 431, 701, 1022, 1440
StyD4I CCNGG 1 cut(s) 577
StyI CCWWGG 1 cut(s) 1067
TaaI ACNGT 2 cut(s) 123, 1168
TaiI ACGT 1 cut(s) 784
TaqI TCGA 5 cut(s) 30, 303, 688, 1006, 1146
TasI AATT 8 cut(s) 74, 369, 632, 1139, 1219, 1252, 1362, 1414
TatI WGTACW 1 cut(s) 524
TauI GCSGC 1 cut(s) 626
TfiI GAWTC 1 cut(s) 815
Tru1I TTAA 5 cut(s) 276, 474, 1199, 1281, 1311
Tru9I TTAA 5 cut(s) 276, 474, 1199, 1281, 1311
TscAI CASTG 1 cut(s) 816
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 5 cut(s) 422, 445, 715, 735, 1213
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 7 cut(s) 215, 277, 311, 326, 402, 720, 1152
TspRI CASTG 1 cut(s) 816
VpaK11BI GGWCC 1 cut(s) 362
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 6 cut(s) 74, 369, 632, 1139, 1362, 1414
XbaI TCTAGA 3 cut(s) 700, 1021, 1439
XceI RCATGY 1 cut(s) 1241
XmiI GTMKAC 1 cut(s) 303
XspI CTAG 4 cut(s) 431, 701, 1022, 1440
Zsp2I ATGCAT 1 cut(s) 1330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.