Rw5G011490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017309
Physical Location & Seq
Forward (+)
13137496 .. 13137975
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011490.1

Sequence Viewer

Length: 480 bp
ATGAGTCTTTTGAGTGGGAAGAAAAATCAGATCGATGAGGGAGTGGTTTACAATCGAATGATTTGGTCTCTAGAACAGGCGCATAATGAGATGGGTTTGCTTCCAACTTTAGGGCCAAGGGAACTGGGAACCATTGCACAAAGTGATGGGCGTAAAATAAATCTGGATGACATAAATCAACGGCATGAATTTATCGATAGATTTCTTGCTGATACAGTCTCCATTGCTACAAGACTTGAGCTTCTCTTAACCTTCCCCTTGCTGCCTAATTGGCAGAGTTTTTTACATGCAACAAATGGTAATTCTTTGGATTGGCTTGAAGGGAAGATTAAAGTAATGTGTGCTCAAGTAGAAGTCATTAACTCTAAAGCAGATGCATTTCTTGGCAAATATGAAGGAGAAAGCATTGAAATTCTCAACTTCCAGAGGAAAATGACAGCGCCCATTGAGAATATGTGGCAAAATTTGGGAGCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

159

Amino Acids

18.0

Weight (kDa)

5.19

Isoelectric Point (pI)

24.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24700 FvH4_5g24710
rosa_chinensis RchiOBHm_Chr5g0018131
rosa_roxburghii Rroxscaffold_1G00059670
rosa_samantha Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200
rosa_wichuraiana Rw5G011490 Rw5G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 188, 411, 463
AdeI CACNNNGTG 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 110
AgsI TTSAA 2 cut(s) 320, 410
AluBI AGCT 2 cut(s) 241, 473
AluI AGCT 2 cut(s) 241, 473
Alw21I GWGCWC 1 cut(s) 346
Alw26I GTCTC 2 cut(s) 72, 223
AoxI GGCC 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 3 cut(s) 188, 411, 463
AspLEI GCGC 2 cut(s) 82, 442
AspS9I GGNCC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 346
BbvI GCAGC 1 cut(s) 249
BccI CCATC 2 cut(s) 85, 140
BceAI ACGGC 1 cut(s) 197
BcoDI GTCTC 2 cut(s) 72, 223
BfaI CTAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 443
BglI GCCNNNNNGGC 1 cut(s) 271
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 134
BpuEI CTTGAG 2 cut(s) 257, 330
Bsa29I ATCGAT 2 cut(s) 33, 195
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse1I ACTGG 1 cut(s) 129
Bse3DI GCAATG 2 cut(s) 132, 222
BseCI ATCGAT 2 cut(s) 33, 195
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 1 cut(s) 110
BseMI GCAATG 2 cut(s) 132, 222
BseNI ACTGG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 249
BshFI GGCC 1 cut(s) 115
BshVI ATCGAT 2 cut(s) 33, 195
BsiHKAI GWGCWC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 72, 223
BsnI GGCC 1 cut(s) 115
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 346
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 1 cut(s) 115
BspDI ATCGAT 2 cut(s) 33, 195
BspLI GGNNCC 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 2 cut(s) 132, 222
BsrI ACTGG 1 cut(s) 129
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 217
BstF5I GGATG 1 cut(s) 172
BstH2I RGCGCY 1 cut(s) 443
BstHHI GCGC 2 cut(s) 82, 442
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 2 cut(s) 72, 223
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 1 cut(s) 271
BstNSI RCATGY 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 249
Bsu15I ATCGAT 2 cut(s) 33, 195
BsuRI GGCC 1 cut(s) 115
BsuTUI ATCGAT 2 cut(s) 33, 195
BtsCI GGATG 1 cut(s) 172
CfoI GCGC 2 cut(s) 82, 442
Cfr13I GGNCC 1 cut(s) 113
ClaI ATCGAT 2 cut(s) 33, 195
CviAII CATG 2 cut(s) 185, 287
CviJI RGCY 4 cut(s) 115, 241, 316, 473
CviKI_1 RGCY 4 cut(s) 115, 241, 316, 473
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 116
Eco31I GGTCTC 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 188, 290
FaiI YATR 7 cut(s) 84, 173, 186, 288, 393, 455, 478
FatI CATG 2 cut(s) 184, 286
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 81, 441
GluI GCNGC 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 443
HaeIII GGCC 1 cut(s) 115
HhaI GCGC 2 cut(s) 82, 442
Hin1II CATG 2 cut(s) 188, 290
Hin6I GCGC 2 cut(s) 80, 440
HinP1I GCGC 2 cut(s) 80, 440
HinfI GANTC 1 cut(s) 4
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 1 cut(s) 30
Hpy188III TCNNGA 3 cut(s) 71, 164, 424
Hpy8I GTNNAC 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 262, 314, 389
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 137, 290, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 271
Hsp92II CATG 2 cut(s) 188, 290
HspAI GCGC 2 cut(s) 80, 440
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 470
LpnPI CCDG 4 cut(s) 62, 110, 149, 437
Lsp1109I GCAGC 1 cut(s) 249
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 71
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 31, 337
MhlI GDGCHC 1 cut(s) 346
MluCI AATT 5 cut(s) 188, 268, 301, 411, 463
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 128
MnlI CCTC 2 cut(s) 31, 420
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 248, 330, 360
MwoI GCNNNNNNNGC 1 cut(s) 271
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 188, 290
NlaIV GGNNCC 1 cut(s) 130
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 1 cut(s) 290
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 130
PspPI GGNCC 1 cut(s) 113
SaqAI TTAA 3 cut(s) 248, 330, 360
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 346
SetI ASST 3 cut(s) 243, 254, 475
SfaNI GCATC 1 cut(s) 364
SmlI CTYRAG 2 cut(s) 236, 345
SmoI CTYRAG 2 cut(s) 236, 345
Sse9I AATT 5 cut(s) 188, 268, 301, 411, 463
SspMI CTAG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 33, 55, 195
TasI AATT 5 cut(s) 188, 268, 301, 411, 463
Tru1I TTAA 3 cut(s) 248, 330, 360
Tru9I TTAA 3 cut(s) 248, 330, 360
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 201, 408
XapI RAATTY 3 cut(s) 188, 411, 463
XbaI TCTAGA 1 cut(s) 70
XceI RCATGY 1 cut(s) 290
XspI CTAG 1 cut(s) 71
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.