Rh5CG142700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
12621605 .. 12622757
1153 bp
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UTR
Exon/CDS
Intron
Rh5CG142700.1

Sequence Viewer

Length: 189 bp
ATGACAGCGCCCATTGAGAATATGTGGCAAAATTTGGGAGCTTTACCCTGGACTTCTAGAAATATGATGCGTGGAGATGGTCAAGAATATGAGGATGCAAAATATGAACAATGGTGCTTCTATTGTCGCCAAGAACTGGGCGCAACCATAGAAAAAGCTTATGCACCTTGTCCTCAACCAATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.26

Weight (kDa)

4.86

Isoelectric Point (pI)

58.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017309)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 136
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 136
AjnI CCWGG 1 cut(s) 47
AluBI AGCT 2 cut(s) 41, 158
AluI AGCT 2 cut(s) 41, 158
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 2 cut(s) 10, 143
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 49
BfaI CTAG 1 cut(s) 57
BfoI RGCGCY 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 49
BmrFI CCNGG 1 cut(s) 49
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 2 cut(s) 57, 85
BmuI ACTGGG 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 141
BseBI CCWGG 1 cut(s) 49
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 136
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 100
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 2 cut(s) 10, 143
BstNI CCWGG 1 cut(s) 49
BstSCI CCNGG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 100
CfoI GCGC 2 cut(s) 10, 143
CviJI RGCY 2 cut(s) 41, 158
CviKI_1 RGCY 2 cut(s) 41, 158
EcoRII CCWGG 1 cut(s) 47
FaiI YATR 6 cut(s) 23, 65, 90, 105, 149, 162
FokI GGATG 1 cut(s) 107
FspBI CTAG 1 cut(s) 57
GlaI GCGC 2 cut(s) 9, 142
HaeII RGCGCY 1 cut(s) 11
HhaI GCGC 2 cut(s) 10, 143
Hin6I GCGC 2 cut(s) 8, 141
HinP1I GCGC 2 cut(s) 8, 141
HindIII AAGCTT 1 cut(s) 156
Hpy188III TCNNGA 2 cut(s) 57, 83
HpyCH4V TGCA 2 cut(s) 98, 164
HspAI GCGC 2 cut(s) 8, 141
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 3 cut(s) 34, 61, 122
LweI GCATC 2 cut(s) 57, 85
MaeI CTAG 1 cut(s) 57
MluCI AATT 1 cut(s) 31
MnlI CCTC 2 cut(s) 85, 183
MspR9I CCNGG 1 cut(s) 49
MvaI CCWGG 1 cut(s) 49
PflMI CCANNNNNTGG 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 47
PspGI CCWGG 1 cut(s) 47
ScrFI CCNGG 1 cut(s) 49
SetI ASST 3 cut(s) 43, 160, 169
SfaNI GCATC 2 cut(s) 57, 85
SgeI CNNG 8 cut(s) 60, 61, 69, 83, 95, 143, 149, 180
Sse9I AATT 1 cut(s) 31
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 47
TasI AATT 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 136
XapI RAATTY 1 cut(s) 31
XbaI TCTAGA 1 cut(s) 56
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.