Rh5CG142500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0017309
Physical Location & Seq
Forward (+)
12620686 .. 12621258
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG142500.1

Sequence Viewer

Length: 573 bp
ATGGAACACATTACTGATGAACAATTGAAAATCATGTCACCTGAGCAACTTAATGAACAATTTAGAGTGAAGTTCAGACACGCATTGACGTCTCTTTTGGCAAAGGGAGATTTTGAGGATACCAACATTGCGAAAGCCCTCCACTGTTATGAGCAAGCGGCTACAAAATTTGCTAAAGGTTATATTGAAAAGATCCATGTTAGTAGTTTGTGGGTGCTTTGTCGATGTATGTCTCTAGATGAATGTGAGCAGCCGATTGGACAAGATAGCAGCTTTATGTCCTTGCTAAAAAGGGGTACTGAAGAAAGCAATATACGTGGTGAAGCGTATATCGGCAGTAGCACACTGGAATCAATAAGACTTCTCGTCACTATTATTGGTACCACCCTGACTTCTGGTTTGATCAAGATGATGTTATGCCTAACATTGGAGAACATTGAGTGGAGGATGCGAAAAATGAGCAATGCTGAGGCTTTACTTACGTTTCTGAATGAGGCTTTTGAGTGGGAAGAAAAATTAGATGAGGGAGTGGTTTTACTATCGAATGATTTGGTCTCTAGAACAGGCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

190

Amino Acids

21.54

Weight (kDa)

5.1

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24700 FvH4_5g24710
rosa_chinensis RchiOBHm_Chr5g0018131
rosa_roxburghii Rroxscaffold_1G00059670
rosa_samantha Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200
rosa_wichuraiana Rw5G011490 Rw5G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 1 cut(s) 167
AcuI CTGAAG 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 298, 382
AfiI CCNNNNNNNGG 1 cut(s) 427
AgsI TTSAA 2 cut(s) 28, 188
AhdI GACNNNNNGTC 1 cut(s) 365
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 3 cut(s) 96, 237, 559
AlwI GGATC 1 cut(s) 187
ApeKI GCWGC 2 cut(s) 250, 270
ApoI RAATTY 1 cut(s) 167
ArsI GACNNNNNNTTYG 4 cut(s) 79, 111, 382, 414
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 30, 332
BanI GGYRCC 1 cut(s) 380
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 2 cut(s) 262, 282
BciVI GTATCC 1 cut(s) 112
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 3 cut(s) 96, 237, 559
BfaI CTAG 2 cut(s) 236, 558
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 3 cut(s) 159, 251, 271
BlsI GCNGC 3 cut(s) 160, 252, 272
BmeRI GACNNNNNGTC 1 cut(s) 365
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 1 cut(s) 438
Bpu10I CCTNAGC 2 cut(s) 42, 468
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 559
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 2 cut(s) 126, 469
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 427
BseMI GCAATG 2 cut(s) 126, 469
BseMII CTCAG 2 cut(s) 33, 459
BseNI ACTGG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 262, 282
BshNI GGYRCC 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 3 cut(s) 96, 237, 559
BsmBI CGTCTC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 559
Bsp143I GATC 2 cut(s) 192, 402
BspACI CCGC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 34, 460
BspLI GGNNCC 1 cut(s) 382
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 126, 469
BsrI ACTGG 1 cut(s) 351
BssMI GATC 2 cut(s) 192, 402
BssNI GRCGYC 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 2 cut(s) 42, 468
BstF5I GGATG 1 cut(s) 453
BstHHI GCGC 1 cut(s) 569
BstKTI GATC 2 cut(s) 195, 405
BstMAI GTCTC 3 cut(s) 96, 237, 559
BstMBI GATC 2 cut(s) 192, 402
BstV1I GCAGC 2 cut(s) 262, 282
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BsuI GTATCC 1 cut(s) 112
BtsCI GGATG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 142, 344
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 1 cut(s) 569
Csp6I GTAC 2 cut(s) 297, 381
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 2 cut(s) 34, 197
CviJI RGCY 6 cut(s) 137, 161, 253, 273, 473, 497
CviKI_1 RGCY 6 cut(s) 137, 161, 253, 273, 473, 497
CviQI GTAC 2 cut(s) 297, 381
DdeI CTNAG 2 cut(s) 42, 468
DpnI GATC 2 cut(s) 194, 404
DpnII GATC 2 cut(s) 192, 402
DriI GACNNNNNGTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 365
Eco31I GGTCTC 1 cut(s) 559
Eco57I CTGAAG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 2 cut(s) 37, 200
FatI CATG 2 cut(s) 33, 196
FbaI TGATCA 1 cut(s) 402
Fnu4HI GCNGC 3 cut(s) 159, 251, 271
FokI GGATG 1 cut(s) 460
Fsp4HI GCNGC 3 cut(s) 159, 251, 271
FspBI CTAG 2 cut(s) 236, 558
GlaI GCGC 1 cut(s) 568
GluI GCNGC 3 cut(s) 159, 251, 271
HhaI GCGC 1 cut(s) 569
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 2 cut(s) 37, 200
Hin6I GCGC 1 cut(s) 567
HinP1I GCGC 1 cut(s) 567
HinfI GANTC 1 cut(s) 350
HphI GGTGA 2 cut(s) 30, 332
Hpy188I TCNGA 2 cut(s) 77, 489
Hpy188III TCNNGA 3 cut(s) 236, 406, 558
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 3 cut(s) 89, 316, 482
HpyF3I CTNAG 2 cut(s) 42, 468
HpySE526I ACGT 3 cut(s) 89, 316, 482
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 2 cut(s) 37, 200
HspAI GCGC 1 cut(s) 567
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 192, 402
LpnPI CCDG 5 cut(s) 54, 332, 381, 401, 549
Lsp1109I GCAGC 2 cut(s) 262, 282
LweI GCATC 1 cut(s) 438
MaeI CTAG 2 cut(s) 236, 558
MaeII ACGT 3 cut(s) 89, 316, 482
MaeIII GTNAC 2 cut(s) 36, 367
MalI GATC 2 cut(s) 194, 404
MboI GATC 2 cut(s) 192, 402
MboII GAAGA 2 cut(s) 314, 521
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 192
MluCI AATT 4 cut(s) 23, 59, 167, 515
MnlI CCTC 6 cut(s) 109, 149, 438, 463, 487, 517
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 147
MunI CAATTG 1 cut(s) 23
NdeII GATC 2 cut(s) 192, 402
NlaIII CATG 2 cut(s) 37, 200
NlaIV GGNNCC 1 cut(s) 382
NmuCI GTSAC 2 cut(s) 36, 367
PfeI GAWTC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 160, 252, 272
Ppu21I YACGTR 1 cut(s) 317
PspN4I GGNNCC 1 cut(s) 382
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 2 cut(s) 298, 382
RsaNI GTAC 2 cut(s) 297, 381
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 159, 251, 271
Sau3AI GATC 2 cut(s) 192, 402
SetI ASST 6 cut(s) 43, 92, 181, 275, 319, 485
SfaNI GCATC 1 cut(s) 438
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 4 cut(s) 23, 59, 167, 515
SsiI CCGC 1 cut(s) 158
SspMI CTAG 2 cut(s) 236, 558
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 3 cut(s) 92, 319, 485
TaqI TCGA 2 cut(s) 223, 542
TasI AATT 4 cut(s) 23, 59, 167, 515
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 1 cut(s) 350
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 2 cut(s) 149, 351
TseFI GTSAC 2 cut(s) 36, 367
TseI GCWGC 2 cut(s) 250, 270
Tsp45I GTSAC 2 cut(s) 36, 367
TspDTI ATGAA 3 cut(s) 33, 69, 255
TspRI CASTG 2 cut(s) 149, 351
XapI RAATTY 1 cut(s) 167
XbaI TCTAGA 2 cut(s) 235, 557
XspI CTAG 2 cut(s) 236, 558
ZraI GACGTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.