structural constituent of ribosome
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g24700 FvH4_5g24710 |
| rosa_chinensis | RchiOBHm_Chr5g0018131 |
| rosa_roxburghii | Rroxscaffold_1G00059670 |
| rosa_samantha | Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200 |
| rosa_wichuraiana | Rw5G011490 Rw5G011630 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 152 |
| AccB1I | GGYRCC | 1 cut(s) | 152 |
| AcsI | RAATTY | 3 cut(s) | 446, 669, 721 |
| AcuI | CTGAAG | 1 cut(s) | 93 |
| AdeI | CACNNNGTG | 1 cut(s) | 401 |
| AfaI | GTAC | 2 cut(s) | 70, 154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 199, 368 |
| AgsI | TTSAA | 2 cut(s) | 578, 668 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 137 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 87, 119 |
| AluBI | AGCT | 4 cut(s) | 22, 45, 499, 731 |
| AluI | AGCT | 4 cut(s) | 22, 45, 499, 731 |
| Alw21I | GWGCWC | 1 cut(s) | 604 |
| Alw26I | GTCTC | 3 cut(s) | 9, 330, 481 |
| AoxI | GGCC | 1 cut(s) | 371 |
| ApeKI | GCWGC | 3 cut(s) | 22, 42, 520 |
| ApoI | RAATTY | 3 cut(s) | 446, 669, 721 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 154, 186 |
| Asp718I | GGTACC | 1 cut(s) | 152 |
| AspLEI | GCGC | 1 cut(s) | 700 |
| AspS9I | GGNCC | 1 cut(s) | 371 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| BanI | GGYRCC | 1 cut(s) | 152 |
| Bbv12I | GWGCWC | 1 cut(s) | 604 |
| BbvCI | CCTCAGC | 1 cut(s) | 240 |
| BbvI | GCAGC | 3 cut(s) | 9, 54, 507 |
| BccI | CCATC | 3 cut(s) | 343, 398, 761 |
| BceAI | ACGGC | 1 cut(s) | 455 |
| BclI | TGATCA | 1 cut(s) | 174 |
| BcoDI | GTCTC | 3 cut(s) | 9, 330, 481 |
| BfaI | CTAG | 3 cut(s) | 8, 329, 747 |
| BfoI | RGCGCY | 1 cut(s) | 701 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 529 |
| BisI | GCNGC | 3 cut(s) | 23, 43, 521 |
| BlsI | GCNGC | 3 cut(s) | 24, 44, 522 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 1 cut(s) | 371 |
| BmiI | GGNNCC | 2 cut(s) | 154, 388 |
| BmrI | ACTGGG | 1 cut(s) | 392 |
| BmsI | GCATC | 4 cut(s) | 210, 622, 747, 775 |
| BmuI | ACTGGG | 1 cut(s) | 392 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 720, 752 |
| Bpu10I | CCTNAGC | 1 cut(s) | 240 |
| BpuEI | CTTGAG | 2 cut(s) | 515, 588 |
| Bsa29I | ATCGAT | 1 cut(s) | 453 |
| BsaAI | YACGTR | 1 cut(s) | 89 |
| BsaI | GGTCTC | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 1 cut(s) | 374 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 199, 368 |
| Bse1I | ACTGG | 2 cut(s) | 123, 387 |
| Bse3DI | GCAATG | 3 cut(s) | 241, 390, 480 |
| BseCI | ATCGAT | 1 cut(s) | 453 |
| BseDI | CCNNGG | 1 cut(s) | 374 |
| BseGI | GGATG | 3 cut(s) | 225, 430, 790 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 199, 368 |
| BseMI | GCAATG | 3 cut(s) | 241, 390, 480 |
| BseMII | CTCAG | 1 cut(s) | 231 |
| BseNI | ACTGG | 2 cut(s) | 123, 387 |
| BseXI | GCAGC | 3 cut(s) | 9, 54, 507 |
| BshFI | GGCC | 1 cut(s) | 373 |
| BshNI | GGYRCC | 1 cut(s) | 152 |
| BshVI | ATCGAT | 1 cut(s) | 453 |
| BsiHKAI | GWGCWC | 1 cut(s) | 604 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 199, 368 |
| BsmAI | GTCTC | 3 cut(s) | 9, 330, 481 |
| BsnI | GGCC | 1 cut(s) | 373 |
| Bso31I | GGTCTC | 1 cut(s) | 330 |
| Bsp1286I | GDGCHC | 1 cut(s) | 604 |
| Bsp143I | GATC | 1 cut(s) | 174 |
| BspANI | GGCC | 1 cut(s) | 373 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspDI | ATCGAT | 1 cut(s) | 453 |
| BspLI | GGNNCC | 2 cut(s) | 154, 388 |
| BspT107I | GGYRCC | 1 cut(s) | 152 |
| BspTNI | GGTCTC | 1 cut(s) | 330 |
| BsrDI | GCAATG | 3 cut(s) | 241, 390, 480 |
| BsrI | ACTGG | 2 cut(s) | 123, 387 |
| BssECI | CCNNGG | 1 cut(s) | 374 |
| BssMI | GATC | 1 cut(s) | 174 |
| BssT1I | CCWWGG | 1 cut(s) | 374 |
| Bst4CI | ACNGT | 1 cut(s) | 475 |
| BstBAI | YACGTR | 1 cut(s) | 89 |
| BstDEI | CTNAG | 2 cut(s) | 240, 251 |
| BstF5I | GGATG | 3 cut(s) | 225, 430, 790 |
| BstH2I | RGCGCY | 1 cut(s) | 701 |
| BstHHI | GCGC | 1 cut(s) | 700 |
| BstKTI | GATC | 1 cut(s) | 177 |
| BstMAI | GTCTC | 3 cut(s) | 9, 330, 481 |
| BstMBI | GATC | 1 cut(s) | 174 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 529 |
| BstNSI | RCATGY | 1 cut(s) | 548 |
| BstV1I | GCAGC | 3 cut(s) | 9, 54, 507 |
| Bsu15I | ATCGAT | 1 cut(s) | 453 |
| BsuRI | GGCC | 1 cut(s) | 373 |
| BsuTUI | ATCGAT | 1 cut(s) | 453 |
| BtsCI | GGATG | 3 cut(s) | 225, 430, 790 |
| BtsIMutI | CAGTG | 1 cut(s) | 116 |
| CfoI | GCGC | 1 cut(s) | 700 |
| Cfr13I | GGNCC | 1 cut(s) | 371 |
| ClaI | ATCGAT | 1 cut(s) | 453 |
| Csp6I | GTAC | 2 cut(s) | 69, 153 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 70, 105 |
| CviAII | CATG | 2 cut(s) | 443, 545 |
| CviJI | RGCY | 7 cut(s) | 22, 45, 245, 373, 499, 574, 731 |
| CviKI_1 | RGCY | 7 cut(s) | 22, 45, 245, 373, 499, 574, 731 |
| CviQI | GTAC | 2 cut(s) | 69, 153 |
| DdeI | CTNAG | 2 cut(s) | 240, 251 |
| DpnI | GATC | 1 cut(s) | 176 |
| DpnII | GATC | 1 cut(s) | 174 |
| DraIII | CACNNNGTG | 1 cut(s) | 401 |
| DriI | GACNNNNNGTC | 1 cut(s) | 137 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 137 |
| Eco130I | CCWWGG | 1 cut(s) | 374 |
| Eco31I | GGTCTC | 1 cut(s) | 330 |
| Eco57I | CTGAAG | 1 cut(s) | 93 |
| EcoT14I | CCWWGG | 1 cut(s) | 374 |
| EcoT22I | ATGCAT | 1 cut(s) | 637 |
| ErhI | CCWWGG | 1 cut(s) | 374 |
| FaeI | CATG | 2 cut(s) | 446, 548 |
| FatI | CATG | 2 cut(s) | 442, 544 |
| FbaI | TGATCA | 1 cut(s) | 174 |
| Fnu4HI | GCNGC | 3 cut(s) | 23, 43, 521 |
| FokI | GGATG | 3 cut(s) | 232, 437, 797 |
| Fsp4HI | GCNGC | 3 cut(s) | 23, 43, 521 |
| FspBI | CTAG | 3 cut(s) | 8, 329, 747 |
| GlaI | GCGC | 1 cut(s) | 699 |
| GluI | GCNGC | 3 cut(s) | 23, 43, 521 |
| HaeII | RGCGCY | 1 cut(s) | 701 |
| HaeIII | GGCC | 1 cut(s) | 373 |
| HhaI | GCGC | 1 cut(s) | 700 |
| Hin1II | CATG | 2 cut(s) | 446, 548 |
| Hin6I | GCGC | 1 cut(s) | 698 |
| HinP1I | GCGC | 1 cut(s) | 698 |
| HinfI | GANTC | 2 cut(s) | 122, 266 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 307 |
| Hpy188I | TCNGA | 2 cut(s) | 261, 292 |
| Hpy188III | TCNNGA | 8 cut(s) | 8, 178, 329, 422, 682, 739, 747, 773 |
| Hpy8I | GTNNAC | 1 cut(s) | 307 |
| HpyAV | CCTTC | 2 cut(s) | 520, 572 |
| HpyCH4III | ACNGT | 1 cut(s) | 475 |
| HpyCH4IV | ACGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 5 cut(s) | 340, 395, 548, 635, 788 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 529 |
| HpyF3I | CTNAG | 2 cut(s) | 240, 251 |
| HpySE526I | ACGT | 1 cut(s) | 88 |
| Hsp92II | CATG | 2 cut(s) | 446, 548 |
| HspAI | GCGC | 1 cut(s) | 698 |
| KpnI | GGTACC | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 1 cut(s) | 174 |
| Kzo9I | GATC | 1 cut(s) | 174 |
| LmnI | GCTCC | 1 cut(s) | 728 |
| LpnPI | CCDG | 8 cut(s) | 104, 153, 173, 320, 368, 407, 695, 724 |
| Lsp1109I | GCAGC | 3 cut(s) | 9, 54, 507 |
| LweI | GCATC | 4 cut(s) | 210, 622, 747, 775 |
| MaeI | CTAG | 3 cut(s) | 8, 329, 747 |
| MaeII | ACGT | 1 cut(s) | 88 |
| MaeIII | GTNAC | 1 cut(s) | 139 |
| MalI | GATC | 1 cut(s) | 176 |
| MboI | GATC | 1 cut(s) | 174 |
| MboII | GAAGA | 3 cut(s) | 86, 293, 595 |
| MhlI | GDGCHC | 1 cut(s) | 604 |
| MluCI | AATT | 5 cut(s) | 446, 526, 559, 669, 721 |
| MlyI | GAGTC | 1 cut(s) | 275 |
| MmeI | TCCRAC | 1 cut(s) | 386 |
| MnlI | CCTC | 6 cut(s) | 210, 235, 289, 646, 678, 775 |
| Mph1103I | ATGCAT | 1 cut(s) | 637 |
| MseI | TTAA | 3 cut(s) | 506, 588, 618 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 529 |
| NdeII | GATC | 1 cut(s) | 174 |
| NlaIII | CATG | 2 cut(s) | 446, 548 |
| NlaIV | GGNNCC | 2 cut(s) | 154, 388 |
| NmuCI | GTSAC | 1 cut(s) | 139 |
| NsiI | ATGCAT | 1 cut(s) | 637 |
| NspI | RCATGY | 1 cut(s) | 548 |
| PfeI | GAWTC | 1 cut(s) | 122 |
| PkrI | GCNGC | 3 cut(s) | 24, 44, 522 |
| PleI | GAGTC | 1 cut(s) | 274 |
| PpsI | GAGTC | 1 cut(s) | 274 |
| Ppu21I | YACGTR | 1 cut(s) | 89 |
| PspN4I | GGNNCC | 2 cut(s) | 154, 388 |
| PspPI | GGNCC | 1 cut(s) | 371 |
| RsaI | GTAC | 2 cut(s) | 70, 154 |
| RsaNI | GTAC | 2 cut(s) | 69, 153 |
| SaqAI | TTAA | 3 cut(s) | 506, 588, 618 |
| SatI | GCNGC | 3 cut(s) | 23, 43, 521 |
| Sau3AI | GATC | 1 cut(s) | 174 |
| Sau96I | GGNCC | 1 cut(s) | 371 |
| SchI | GAGTC | 1 cut(s) | 275 |
| SduI | GDGCHC | 1 cut(s) | 604 |
| SetI | ASST | 8 cut(s) | 24, 47, 91, 257, 339, 501, 512, 733 |
| SfaNI | GCATC | 4 cut(s) | 210, 622, 747, 775 |
| SmlI | CTYRAG | 2 cut(s) | 494, 603 |
| SmoI | CTYRAG | 2 cut(s) | 494, 603 |
| Sse9I | AATT | 5 cut(s) | 446, 526, 559, 669, 721 |
| SspMI | CTAG | 3 cut(s) | 8, 329, 747 |
| StyI | CCWWGG | 1 cut(s) | 374 |
| TaaI | ACNGT | 1 cut(s) | 475 |
| TaiI | ACGT | 1 cut(s) | 91 |
| TaqI | TCGA | 2 cut(s) | 313, 453 |
| TasI | AATT | 5 cut(s) | 446, 526, 559, 669, 721 |
| TfiI | GAWTC | 1 cut(s) | 122 |
| Tru1I | TTAA | 3 cut(s) | 506, 588, 618 |
| Tru9I | TTAA | 3 cut(s) | 506, 588, 618 |
| TscAI | CASTG | 1 cut(s) | 123 |
| TseFI | GTSAC | 1 cut(s) | 139 |
| TseI | GCWGC | 3 cut(s) | 22, 42, 520 |
| Tsp45I | GTSAC | 1 cut(s) | 139 |
| TspDTI | ATGAA | 2 cut(s) | 27, 459 |
| TspRI | CASTG | 1 cut(s) | 123 |
| XapI | RAATTY | 3 cut(s) | 446, 669, 721 |
| XbaI | TCTAGA | 3 cut(s) | 7, 328, 746 |
| XceI | RCATGY | 1 cut(s) | 548 |
| XspI | CTAG | 3 cut(s) | 8, 329, 747 |
| Zsp2I | ATGCAT | 1 cut(s) | 637 |