Rh5AG133400

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0017309
Physical Location & Seq
Reverse (-)
13581609 .. 13584776
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG133400.1

Sequence Viewer

Length: 1254 bp
ATGGAACACATTACTGATGAACAATTGAAAATCATGTCACCTGAGCAACTTAATGAACAATTTAGAGTGAAGTTCAGACACGCATTGACGTCTCTTTTGGCAGAGGGGGATTTTGAGGATGACAACATTGCGAAAGCCCTCCACTGTTGTGAGCAAGCGGCTACAAAATTTGCTAAAGGTTATATTGAAAAGATCCATGTTAGTTGTTTGTGGGTGCTTTGTCGATGCATGTCTCTAGAGGAATGTGAGCAGCCGATTGGACAAGATAGCAGCTTTATGTCCTTGCTAAAAAGGGGTACTGAAGAAAGCAATATACGTGGTCAAGCGTATATGGGCAGTAGCACACTGGAATCAGTAAGACTTGCAGTCACTGTTCTTGGTACCACCCTGACTTTTGGTTTGATCAAGATGAAGTTATGCCTCACCCTGGAAAACATTGAGTGGAAGATGAGAAAAATGACCAATGCTGAGGCTTTACTTAGGTTTCTGAATGAGTCTTTTGAGTGGGAAGAAAAATCAGATGAGGGAGTGGTTTACAATCGAATGATTCGGTCTCTAGAACAGGCGCATAATGAGATAGGTTTGATTCCAAATTTAGGGCCAAGGGAACTGGGAACCATTACAGGAAGTGATGGGCTTAAAATAAATCTGGATGACATAAATCAACGGCATGAATTTATCGATAGATTTCTTGCTGATACAGTTTCCATTGCTACCAGACTTGAGCTTCTCTTGACCTTCCCCTTGCTGCCTAATTGGCAGAGTTTTTTACATGCAACAAAAGGTAATTCTTTGGACTGGATTGAGGGGAAGATTAAAGTAATGTTAGCTCGTGTAGAAGTCATTAACTCTAAAGCAAATGCATTTATTGACAAATATGAAGGACCAAACCTTGAAGTTCTCAACTTCCAGAGGAAAATGACAGCGCCCATTGAGAACATGTGGCAAAATTTATTGGGAGCTGATTCTTTCATGCATATTTCACATGGGCAATGCAGCTTAGGTACTCGGTCAAAAACAGTATCTGCTGTGCCAATGGGACAGCAGAAATGTTTTATTGAGTTGCCAATAAATAAAATATGGAATGATTTGAACAATTGGTGGAAGATGTTGAGGAGTCAACAACAAGTATACAAGAGGTCAAAGTCGAATCACACTATGTCAGAGGAACCTTCCCTGGAAACAAGAGAGAGTGAGACTCTAGATGCCAGGGGAACCATCCTTGGTGACGGGAGATGCAAGTCAATTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

417

Amino Acids

47.6

Weight (kDa)

5.89

Isoelectric Point (pI)

53.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017309)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g24700 FvH4_5g24710
rosa_chinensis RchiOBHm_Chr5g0018131
rosa_roxburghii Rroxscaffold_1G00059670
rosa_samantha Rh5AG132000 Rh5AG133400 Rh5CG142500 Rh5CG142600 Rh5CG142700 Rh5CG144100 Rh5DG132200
rosa_wichuraiana Rw5G011490 Rw5G011630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 92
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AccI GTMKAC 1 cut(s) 1131
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 187
AcsI RAATTY 4 cut(s) 167, 592, 674, 949
AcuI CTGAAG 1 cut(s) 321
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 3 cut(s) 298, 382, 1006
AfiI CCNNNNNNNGG 2 cut(s) 427, 596
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 4 cut(s) 28, 188, 896, 1093
AhdI GACNNNNNGTC 1 cut(s) 365
AjnI CCWGG 3 cut(s) 426, 1176, 1208
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 5 cut(s) 273, 727, 830, 962, 999
AluI AGCT 5 cut(s) 273, 727, 830, 962, 999
Alw26I GTCTC 4 cut(s) 96, 237, 558, 1190
AlwI GGATC 1 cut(s) 187
AlwNI CAGNNNCTG 2 cut(s) 371, 1025
AoxI GGCC 1 cut(s) 599
ApeKI GCWGC 4 cut(s) 250, 270, 748, 996
ApoI RAATTY 4 cut(s) 167, 592, 674, 949
ArsI GACNNNNNNTTYG 4 cut(s) 79, 111, 382, 414
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 568, 928
AspS9I GGNCC 2 cut(s) 599, 884
AsuHPI GGTGA 3 cut(s) 30, 415, 1238
AvaII GGWCC 1 cut(s) 884
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 831
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 4 cut(s) 262, 282, 735, 1008
BccI CCATC 2 cut(s) 626, 1226
BceAI ACGGC 1 cut(s) 683
BciT130I CCWGG 3 cut(s) 428, 1178, 1210
BclI TGATCA 1 cut(s) 402
BcoDI GTCTC 4 cut(s) 96, 237, 558, 1190
BfaI CTAG 3 cut(s) 236, 557, 1202
BfoI RGCGCY 1 cut(s) 929
BglI GCCNNNNNGGC 1 cut(s) 757
BisI GCNGC 5 cut(s) 159, 251, 271, 749, 997
BlsI GCNGC 5 cut(s) 160, 252, 272, 750, 998
Bme1390I CCNGG 3 cut(s) 428, 1178, 1210
Bme18I GGWCC 1 cut(s) 884
BmeRI GACNNNNNGTC 1 cut(s) 365
BmgT120I GGNCC 2 cut(s) 599, 884
BmiI GGNNCC 4 cut(s) 382, 616, 1170, 1216
BmrFI CCNGG 3 cut(s) 428, 1178, 1210
BmrI ACTGGG 1 cut(s) 620
BmsI GCATC 3 cut(s) 215, 1195, 1226
BmuI ACTGGG 1 cut(s) 620
BplI GAGNNNNNCTC 2 cut(s) 1183, 1215
Bpu10I CCTNAGC 3 cut(s) 42, 468, 1000
BpuEI CTTGAG 1 cut(s) 743
Bsa29I ATCGAT 1 cut(s) 681
BsaAI YACGTR 1 cut(s) 317
BsaHI GRCGYC 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 5 cut(s) 426, 602, 1176, 1209, 1222
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 596
Bse1I ACTGG 3 cut(s) 351, 615, 803
Bse3DI GCAATG 3 cut(s) 126, 708, 998
BseBI CCWGG 3 cut(s) 428, 1178, 1210
BseCI ATCGAT 1 cut(s) 681
BseDI CCNNGG 5 cut(s) 426, 602, 1176, 1209, 1222
BseGI GGATG 3 cut(s) 124, 658, 1218
BseLI CCNNNNNNNGG 2 cut(s) 427, 596
BseMI GCAATG 3 cut(s) 126, 708, 998
BseMII CTCAG 2 cut(s) 33, 459
BseNI ACTGG 3 cut(s) 351, 615, 803
BseRI GAGGAG 1 cut(s) 1129
BseXI GCAGC 4 cut(s) 262, 282, 735, 1008
BshFI GGCC 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 681
BslFI GGGAC 1 cut(s) 1053
BslI CCNNNNNNNGG 2 cut(s) 427, 596
BsmAI GTCTC 4 cut(s) 96, 237, 558, 1190
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 1053
BsnI GGCC 1 cut(s) 601
Bso31I GGTCTC 1 cut(s) 558
Bsp143I GATC 2 cut(s) 192, 402
BspACI CCGC 1 cut(s) 158
BspANI GGCC 1 cut(s) 601
BspCNI CTCAG 2 cut(s) 34, 460
BspDI ATCGAT 1 cut(s) 681
BspLI GGNNCC 4 cut(s) 382, 616, 1170, 1216
BspPI GGATC 1 cut(s) 187
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 558
BsrDI GCAATG 3 cut(s) 126, 708, 998
BsrI ACTGG 3 cut(s) 351, 615, 803
BssECI CCNNGG 5 cut(s) 426, 602, 1176, 1209, 1222
BssMI GATC 2 cut(s) 192, 402
BssNAI GTATAC 1 cut(s) 1132
BssNI GRCGYC 1 cut(s) 89
BssSI CACGAG 1 cut(s) 831
BssT1I CCWWGG 2 cut(s) 602, 1222
Bst1107I GTATAC 1 cut(s) 1132
Bst2BI CACGAG 1 cut(s) 831
Bst2UI CCWGG 3 cut(s) 428, 1178, 1210
Bst4CI ACNGT 4 cut(s) 146, 373, 703, 1021
BstACI GRCGYC 1 cut(s) 89
BstBAI YACGTR 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 4 cut(s) 42, 468, 479, 1000
BstF5I GGATG 3 cut(s) 124, 658, 1218
BstH2I RGCGCY 1 cut(s) 929
BstHHI GCGC 2 cut(s) 568, 928
BstKTI GATC 2 cut(s) 195, 405
BstMAI GTCTC 4 cut(s) 96, 237, 558, 1190
BstMBI GATC 2 cut(s) 192, 402
BstMWI GCNNNNNNNGC 1 cut(s) 757
BstNI CCWGG 3 cut(s) 428, 1178, 1210
BstNSI RCATGY 3 cut(s) 232, 776, 943
BstSCI CCNGG 3 cut(s) 426, 1176, 1208
BstV1I GCAGC 4 cut(s) 262, 282, 735, 1008
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZ17I GTATAC 1 cut(s) 1132
Bsu15I ATCGAT 1 cut(s) 681
BsuRI GGCC 1 cut(s) 601
BsuTUI ATCGAT 1 cut(s) 681
BtsCI GGATG 3 cut(s) 124, 658, 1218
BtsIMutI CAGTG 3 cut(s) 142, 344, 369
Cac8I GCNNGC 1 cut(s) 156
CaiI CAGNNNCTG 2 cut(s) 371, 1025
CfoI GCGC 2 cut(s) 568, 928
Cfr13I GGNCC 2 cut(s) 599, 884
ClaI ATCGAT 1 cut(s) 681
Csp6I GTAC 3 cut(s) 297, 381, 1005
CspCI CAANNNNNGTGG 2 cut(s) 298, 333
CviAII CATG 8 cut(s) 34, 197, 229, 671, 773, 940, 973, 986
CviQI GTAC 3 cut(s) 297, 381, 1005
DdeI CTNAG 4 cut(s) 42, 468, 479, 1000
DpnI GATC 2 cut(s) 194, 404
DpnII GATC 2 cut(s) 192, 402
DriI GACNNNNNGTC 1 cut(s) 365
Eam1105I GACNNNNNGTC 1 cut(s) 365
Eco130I CCWWGG 2 cut(s) 602, 1222
Eco31I GGTCTC 1 cut(s) 558
Eco47I GGWCC 1 cut(s) 884
Eco57I CTGAAG 1 cut(s) 321
EcoRII CCWGG 3 cut(s) 426, 1176, 1208
EcoT14I CCWWGG 2 cut(s) 602, 1222
EcoT22I ATGCAT 3 cut(s) 230, 865, 978
ErhI CCWWGG 2 cut(s) 602, 1222
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 8 cut(s) 37, 200, 232, 674, 776, 943, 976, 989
FaqI GGGAC 1 cut(s) 1053
FatI CATG 8 cut(s) 33, 196, 228, 670, 772, 939, 972, 985
FbaI TGATCA 1 cut(s) 402
FblI GTMKAC 1 cut(s) 1131
Fnu4HI GCNGC 5 cut(s) 159, 251, 271, 749, 997
FokI GGATG 3 cut(s) 131, 665, 1205
Fsp4HI GCNGC 5 cut(s) 159, 251, 271, 749, 997
FspBI CTAG 3 cut(s) 236, 557, 1202
GlaI GCGC 2 cut(s) 567, 927
GluI GCNGC 5 cut(s) 159, 251, 271, 749, 997
HaeII RGCGCY 1 cut(s) 929
HaeIII GGCC 1 cut(s) 601
HhaI GCGC 2 cut(s) 568, 928
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 8 cut(s) 37, 200, 232, 674, 776, 943, 976, 989
Hin6I GCGC 2 cut(s) 566, 926
HinP1I GCGC 2 cut(s) 566, 926
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HinfI GANTC 8 cut(s) 350, 494, 547, 586, 965, 1117, 1150, 1198
HphI GGTGA 3 cut(s) 30, 415, 1238
Hpy166II GTNNAC 3 cut(s) 535, 1121, 1132
Hpy188I TCNGA 4 cut(s) 77, 489, 520, 1165
Hpy188III TCNNGA 7 cut(s) 236, 406, 557, 650, 733, 910, 1202
Hpy8I GTNNAC 3 cut(s) 535, 1121, 1132
HpyAV CCTTC 3 cut(s) 748, 875, 1182
HpyCH4III ACNGT 4 cut(s) 146, 373, 703, 1021
HpyCH4IV ACGT 2 cut(s) 89, 316
HpyCH4V TGCA 7 cut(s) 228, 365, 776, 863, 976, 996, 1239
HpyF10VI GCNNNNNNNGC 1 cut(s) 757
HpyF3I CTNAG 4 cut(s) 42, 468, 479, 1000
HpySE526I ACGT 2 cut(s) 89, 316
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 8 cut(s) 37, 200, 232, 674, 776, 943, 976, 989
HspAI GCGC 2 cut(s) 566, 926
KpnI GGTACC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 402
Kzo9I GATC 2 cut(s) 192, 402
LmnI GCTCC 1 cut(s) 959
Lsp1109I GCAGC 4 cut(s) 262, 282, 735, 1008
LweI GCATC 3 cut(s) 215, 1195, 1226
MaeI CTAG 3 cut(s) 236, 557, 1202
MaeII ACGT 2 cut(s) 89, 316
MaeIII GTNAC 3 cut(s) 36, 367, 1226
MalI GATC 2 cut(s) 194, 404
MboI GATC 2 cut(s) 192, 402
MboII GAAGA 5 cut(s) 314, 457, 521, 823, 1117
MfeI CAATTG 2 cut(s) 23, 1096
MflI RGATCY 1 cut(s) 192
MlyI GAGTC 3 cut(s) 503, 1126, 1192
Mph1103I ATGCAT 3 cut(s) 230, 865, 978
MseI TTAA 4 cut(s) 51, 639, 816, 846
MslI CAYNNNNRTG 1 cut(s) 147
MspR9I CCNGG 3 cut(s) 428, 1178, 1210
MunI CAATTG 2 cut(s) 23, 1096
MvaI CCWGG 3 cut(s) 428, 1178, 1210
MwoI GCNNNNNNNGC 1 cut(s) 757
NdeII GATC 2 cut(s) 192, 402
NlaIII CATG 8 cut(s) 37, 200, 232, 674, 776, 943, 976, 989
NlaIV GGNNCC 4 cut(s) 382, 616, 1170, 1216
NmuCI GTSAC 3 cut(s) 36, 367, 1226
NsiI ATGCAT 3 cut(s) 230, 865, 978
NspI RCATGY 3 cut(s) 232, 776, 943
OliI CACNNNNGTG 1 cut(s) 147
PciI ACATGT 1 cut(s) 939
PfeI GAWTC 5 cut(s) 350, 547, 586, 965, 1150
PkrI GCNGC 5 cut(s) 160, 252, 272, 750, 998
PleI GAGTC 3 cut(s) 502, 1125, 1192
PpsI GAGTC 3 cut(s) 502, 1125, 1192
Ppu21I YACGTR 1 cut(s) 317
PscI ACATGT 1 cut(s) 939
Psp6I CCWGG 3 cut(s) 426, 1176, 1208
PspGI CCWGG 3 cut(s) 426, 1176, 1208
PspN4I GGNNCC 4 cut(s) 382, 616, 1170, 1216
PspPI GGNCC 2 cut(s) 599, 884
PstNI CAGNNNCTG 2 cut(s) 371, 1025
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 3 cut(s) 298, 382, 1006
RsaNI GTAC 3 cut(s) 297, 381, 1005
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 4 cut(s) 51, 639, 816, 846
SatI GCNGC 5 cut(s) 159, 251, 271, 749, 997
Sau3AI GATC 2 cut(s) 192, 402
Sau96I GGNCC 2 cut(s) 599, 884
SchI GAGTC 3 cut(s) 503, 1126, 1192
ScrFI CCNGG 3 cut(s) 428, 1178, 1210
SfaNI GCATC 3 cut(s) 215, 1195, 1226
SinI GGWCC 1 cut(s) 884
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SsiI CCGC 1 cut(s) 158
SspMI CTAG 3 cut(s) 236, 557, 1202
StyD4I CCNGG 3 cut(s) 426, 1176, 1208
StyI CCWWGG 2 cut(s) 602, 1222
TaaI ACNGT 4 cut(s) 146, 373, 703, 1021
TaiI ACGT 2 cut(s) 92, 319
TaqI TCGA 4 cut(s) 223, 541, 681, 1148
TaqII GACCGA 2 cut(s) 540, 999
TauI GCSGC 1 cut(s) 161
TfiI GAWTC 5 cut(s) 350, 547, 586, 965, 1150
Tru1I TTAA 4 cut(s) 51, 639, 816, 846
Tru9I TTAA 4 cut(s) 51, 639, 816, 846
TscAI CASTG 3 cut(s) 149, 351, 376
TseFI GTSAC 3 cut(s) 36, 367, 1226
TseI GCWGC 4 cut(s) 250, 270, 748, 996
Tsp45I GTSAC 3 cut(s) 36, 367, 1226
TspDTI ATGAA 6 cut(s) 33, 69, 425, 687, 894, 961
TspRI CASTG 3 cut(s) 149, 351, 376
VpaK11BI GGWCC 1 cut(s) 884
XapI RAATTY 4 cut(s) 167, 592, 674, 949
XbaI TCTAGA 3 cut(s) 235, 556, 1201
XceI RCATGY 3 cut(s) 232, 776, 943
XmiI GTMKAC 1 cut(s) 1131
XspI CTAG 3 cut(s) 236, 557, 1202
ZraI GACGTC 1 cut(s) 90
Zsp2I ATGCAT 3 cut(s) 230, 865, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.